data_4J6
# 
_chem_comp.id                                    4J6 
_chem_comp.name                                  "(4R,5S)-5-[(2S,3R)-3-hydroxy-1-oxobutan-2-yl]-4-methyl-3-({(3S,5S)-5-[(sulfamoylamino)methyl]pyrrolidin-3-yl}sulfanyl)-4,5-dihydro-1H-pyrrole-2-carboxylic acid" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C15 H26 N4 O6 S2" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         "Doripenem(open form, pyrroline tautomer form 1, SP2 connection to Thio)" 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2015-11-18 
_chem_comp.pdbx_modified_date                    2024-09-27 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        422.520 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     4J6 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        3PAE 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
_chem_comp.pdbx_pcm                              Y 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
4J6 CAA CAA C 0 1 N N N N N N -2.403 -21.890 -7.380  7.613  -0.655 -0.562 CAA 4J6 1  
4J6 CAB CAB C 0 1 N N N N N N -1.190 -17.625 -9.017  3.176  -1.963 0.986  CAB 4J6 2  
4J6 NAC NAC N 0 1 N N N N N N 3.105  -12.300 -15.622 -7.276 0.956  0.870  NAC 4J6 3  
4J6 OAD OAD O 0 1 N N N N N N 1.338  -21.355 -8.467  5.497  -1.153 1.977  OAD 4J6 4  
4J6 OAE OAE O 0 1 N N N N N N 2.823  -19.164 -12.281 2.541  3.610  -0.113 OAE 4J6 5  
4J6 OAF OAF O 0 1 N N N N N N 3.769  -14.508 -16.705 -7.362 -1.408 0.165  OAF 4J6 6  
4J6 OAG OAG O 0 1 N N N N N N 3.202  -14.460 -14.290 -7.600 0.425  -1.518 OAG 4J6 7  
4J6 OAH OAH O 0 1 N N N N N N 2.008  -17.376 -13.183 1.007  2.611  1.151  OAH 4J6 8  
4J6 OAI OAI O 0 1 N N N N N N -3.245 -20.168 -8.849  6.176  -0.689 -2.505 OAI 4J6 9  
4J6 CAJ CAJ C 0 1 N N N N N N 0.175  -21.606 -9.020  5.227  -0.374 1.095  CAJ 4J6 10 
4J6 CAK CAK C 0 1 N N N N N N -1.665 -17.122 -14.208 -1.095 0.072  -0.923 CAK 4J6 11 
4J6 CAL CAL C 0 1 N N N N N N 0.387  -14.222 -14.860 -4.472 -0.668 0.414  CAL 4J6 12 
4J6 CAM CAM C 0 1 N N N N N N -1.933 -14.768 -14.006 -2.056 -1.244 0.908  CAM 4J6 13 
4J6 NAN NAN N 0 1 N N N N N N 0.471  -19.752 -10.823 3.579  1.011  -0.748 NAN 4J6 14 
4J6 NAO NAO N 0 1 N N N N N N -0.637 -16.520 -15.086 -2.560 0.262  -0.864 NAO 4J6 15 
4J6 NAP NAP N 0 1 N N N N N N 1.285  -14.268 -16.041 -5.378 -0.171 -0.626 NAP 4J6 16 
4J6 SAQ SAQ S 0 1 N N N N N N -0.592 -15.971 -11.943 0.384  -0.055 1.396  SAQ 4J6 17 
4J6 CAR CAR C 0 1 N N N N N N 1.894  -18.330 -12.393 1.952  2.505  0.391  CAR 4J6 18 
4J6 CAS CAS C 0 1 N N N N N N 0.638  -18.534 -11.568 2.432  1.223  0.035  CAS 4J6 19 
4J6 CAT CAT C 0 1 N N R N N N -2.288 -21.200 -8.750  6.266  -0.235 -1.153 CAT 4J6 20 
4J6 CAU CAU C 0 1 N N R N N N -1.355 -18.330 -10.363 2.631  -1.088 -0.145 CAU 4J6 21 
4J6 CAV CAV C 0 1 N N S N N N -0.909 -15.044 -15.114 -3.100 -0.952 -0.199 CAV 4J6 22 
4J6 CAW CAW C 0 1 N N S N N N -1.932 -16.051 -13.170 -0.717 -0.884 0.224  CAW 4J6 23 
4J6 CAX CAX C 0 1 N N S N N N -0.921 -20.556 -9.004  5.133  -0.853 -0.331 CAX 4J6 24 
4J6 CAY CAY C 0 1 N N S N N N -0.920 -19.834 -10.358 3.786  -0.433 -0.922 CAY 4J6 25 
4J6 CAZ CAZ C 0 1 N N N N N N -0.427 -17.712 -11.412 1.839  0.074  0.411  CAZ 4J6 26 
4J6 SBA SBA S 0 1 N N N N N N 2.889  -13.914 -15.650 -7.010 -0.131 -0.351 SBA 4J6 27 
4J6 H1  H1  H 0 1 N N N N N N -3.407 -22.326 -7.272  8.420  -0.215 -1.147 H1  4J6 28 
4J6 H2  H2  H 0 1 N N N N N N -1.648 -22.686 -7.306  7.681  -0.309 0.469  H2  4J6 29 
4J6 H3  H3  H 0 1 N N N N N N -2.236 -21.151 -6.582  7.697  -1.742 -0.586 H3  4J6 30 
4J6 H4  H4  H 0 1 N N N N N N -1.864 -18.083 -8.278  3.618  -1.329 1.755  H4  4J6 31 
4J6 H5  H5  H 0 1 N N N N N N -0.149 -17.726 -8.676  2.364  -2.547 1.418  H5  4J6 32 
4J6 H6  H6  H 0 1 N N N N N N -1.438 -16.559 -9.129  3.937  -2.636 0.589  H6  4J6 33 
4J6 H7  H7  H 0 1 N N N N N N 2.519  -11.897 -14.919 -7.697 0.666  1.694  H7  4J6 34 
4J6 H8  H8  H 0 1 N N N N N N 4.062  -12.095 -15.416 -7.010 1.882  0.761  H8  4J6 35 
4J6 H10 H10 H 0 1 N N N N N N 3.535  -18.926 -12.863 2.144  4.439  0.187  H10 4J6 36 
4J6 H11 H11 H 0 1 N N N N N N -4.113 -20.524 -8.698  6.244  -1.649 -2.603 H11 4J6 37 
4J6 H12 H12 H 0 1 N N N N N N -0.003 -22.563 -9.488  5.054  0.666  1.327  H12 4J6 38 
4J6 H14 H14 H 0 1 N N N N N N -2.578 -17.352 -14.776 -0.815 -0.368 -1.880 H14 4J6 39 
4J6 H15 H15 H 0 1 N N N N N N -1.286 -18.040 -13.735 -0.588 1.028  -0.791 H15 4J6 40 
4J6 H16 H16 H 0 1 N N N N N N 0.914  -14.641 -13.990 -4.372 0.084  1.197  H16 4J6 41 
4J6 H17 H17 H 0 1 N N N N N N 0.115  -13.176 -14.655 -4.877 -1.585 0.840  H17 4J6 42 
4J6 H18 H18 H 0 1 N N N N N N -1.627 -13.905 -13.397 -2.228 -0.608 1.777  H18 4J6 43 
4J6 H19 H19 H 0 1 N N N N N N -2.929 -14.581 -14.433 -2.074 -2.296 1.192  H19 4J6 44 
4J6 H20 H20 H 0 1 N N N N N N 0.676  -20.536 -11.409 4.142  1.709  -1.119 H20 4J6 45 
4J6 H21 H21 H 0 1 N N N N N N -0.705 -16.901 -16.008 -2.948 0.370  -1.789 H21 4J6 46 
4J6 H23 H23 H 0 1 N N N N N N 0.964  -13.601 -16.713 -5.021 0.134  -1.474 H23 4J6 47 
4J6 H24 H24 H 0 1 N N N N N N -2.466 -21.954 -9.531  6.182  0.851  -1.128 H24 4J6 48 
4J6 H25 H25 H 0 1 N N N N N N -2.400 -18.254 -10.699 2.008  -1.680 -0.816 H25 4J6 49 
4J6 H26 H26 H 0 1 N N N N N N -1.334 -14.759 -16.087 -3.159 -1.782 -0.904 H26 4J6 50 
4J6 H27 H27 H 0 1 N N N N N N -2.884 -16.205 -12.641 -0.242 -1.782 -0.173 H27 4J6 51 
4J6 H28 H28 H 0 1 N N N N N N -0.713 -19.826 -8.207  5.217  -1.940 -0.356 H28 4J6 52 
4J6 H29 H29 H 0 1 N N N N N N -1.537 -20.393 -11.077 3.733  -0.699 -1.978 H29 4J6 53 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
4J6 OAF SBA DOUB N N 1  
4J6 NAP SBA SING N N 2  
4J6 NAP CAL SING N N 3  
4J6 SBA NAC SING N N 4  
4J6 SBA OAG DOUB N N 5  
4J6 CAV NAO SING N N 6  
4J6 CAV CAL SING N N 7  
4J6 CAV CAM SING N N 8  
4J6 NAO CAK SING N N 9  
4J6 CAK CAW SING N N 10 
4J6 CAM CAW SING N N 11 
4J6 OAH CAR DOUB N N 12 
4J6 CAW SAQ SING N N 13 
4J6 CAR OAE SING N N 14 
4J6 CAR CAS SING N N 15 
4J6 SAQ CAZ SING N N 16 
4J6 CAS CAZ DOUB N N 17 
4J6 CAS NAN SING N N 18 
4J6 CAZ CAU SING N N 19 
4J6 NAN CAY SING N N 20 
4J6 CAU CAY SING N N 21 
4J6 CAU CAB SING N N 22 
4J6 CAY CAX SING N N 23 
4J6 CAJ CAX SING N N 24 
4J6 CAJ OAD DOUB N N 25 
4J6 CAX CAT SING N N 26 
4J6 OAI CAT SING N N 27 
4J6 CAT CAA SING N N 28 
4J6 CAA H1  SING N N 29 
4J6 CAA H2  SING N N 30 
4J6 CAA H3  SING N N 31 
4J6 CAB H4  SING N N 32 
4J6 CAB H5  SING N N 33 
4J6 CAB H6  SING N N 34 
4J6 NAC H7  SING N N 35 
4J6 NAC H8  SING N N 36 
4J6 OAE H10 SING N N 37 
4J6 OAI H11 SING N N 38 
4J6 CAJ H12 SING N N 39 
4J6 CAK H14 SING N N 40 
4J6 CAK H15 SING N N 41 
4J6 CAL H16 SING N N 42 
4J6 CAL H17 SING N N 43 
4J6 CAM H18 SING N N 44 
4J6 CAM H19 SING N N 45 
4J6 NAN H20 SING N N 46 
4J6 NAO H21 SING N N 47 
4J6 NAP H23 SING N N 48 
4J6 CAT H24 SING N N 49 
4J6 CAU H25 SING N N 50 
4J6 CAV H26 SING N N 51 
4J6 CAW H27 SING N N 52 
4J6 CAX H28 SING N N 53 
4J6 CAY H29 SING N N 54 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
4J6 SMILES           ACDLabs              12.01 "CC(O)C(C=O)C2NC(C(O)=O)=C(SC1CNC(CNS(N)(=O)=O)C1)C2C"                                                                                                                               
4J6 InChI            InChI                1.03  "InChI=1S/C15H26N4O6S2/c1-7-12(11(6-20)8(2)21)19-13(15(22)23)14(7)26-10-3-9(17-5-10)4-18-27(16,24)25/h6-12,17-19,21H,3-5H2,1-2H3,(H,22,23)(H2,16,24,25)/t7-,8-,9+,10+,11-,12-/m1/s1" 
4J6 InChIKey         InChI                1.03  QJKQOMNNBOTMCR-PQTSNVLCSA-N                                                                                                                                                          
4J6 SMILES_CANONICAL CACTVS               3.385 "C[C@@H](O)[C@@H](C=O)[C@@H]1NC(=C(S[C@@H]2CN[C@H](CN[S](N)(=O)=O)C2)[C@@H]1C)C(O)=O"                                                                                                
4J6 SMILES           CACTVS               3.385 "C[CH](O)[CH](C=O)[CH]1NC(=C(S[CH]2CN[CH](CN[S](N)(=O)=O)C2)[CH]1C)C(O)=O"                                                                                                           
4J6 SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "C[C@@H]1[C@@H](NC(=C1S[C@H]2C[C@H](NC2)CNS(=O)(=O)N)C(=O)O)[C@H](C=O)[C@@H](C)O"                                                                                                    
4J6 SMILES           "OpenEye OEToolkits" 1.7.6 "CC1C(NC(=C1SC2CC(NC2)CNS(=O)(=O)N)C(=O)O)C(C=O)C(C)O"                                                                                                                               
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
4J6 "SYSTEMATIC NAME" ACDLabs              12.01 "(4R,5S)-5-[(2S,3R)-3-hydroxy-1-oxobutan-2-yl]-4-methyl-3-({(3S,5S)-5-[(sulfamoylamino)methyl]pyrrolidin-3-yl}sulfanyl)-4,5-dihydro-1H-pyrrole-2-carboxylic acid"           
4J6 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 "(2S,3R)-3-methyl-2-[(2S,3R)-3-oxidanyl-1-oxidanylidene-butan-2-yl]-4-[(3S,5S)-5-[(sulfamoylamino)methyl]pyrrolidin-3-yl]sulfanyl-2,3-dihydro-1H-pyrrole-5-carboxylic acid" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
4J6 "Create component"   2015-11-18 RCSB 
4J6 "Initial release"    2015-11-25 RCSB 
4J6 "Other modification" 2016-09-15 RCSB 
4J6 "Modify synonyms"    2016-09-19 RCSB 
4J6 "Modify synonyms"    2021-03-13 RCSB 
4J6 "Modify PCM"         2024-09-27 PDBE 
# 
_pdbx_chem_comp_synonyms.ordinal      1 
_pdbx_chem_comp_synonyms.comp_id      4J6 
_pdbx_chem_comp_synonyms.name         "Doripenem(open form, pyrroline tautomer form 1, SP2 connection to Thio)" 
_pdbx_chem_comp_synonyms.provenance   PDB 
_pdbx_chem_comp_synonyms.type         ? 
# 
_pdbx_chem_comp_pcm.pcm_id                             1 
_pdbx_chem_comp_pcm.comp_id                            4J6 
_pdbx_chem_comp_pcm.modified_residue_id                SER 
_pdbx_chem_comp_pcm.type                               None 
_pdbx_chem_comp_pcm.category                           "Covalent chemical modification" 
_pdbx_chem_comp_pcm.position                           "Amino-acid side chain" 
_pdbx_chem_comp_pcm.polypeptide_position               "Any position" 
_pdbx_chem_comp_pcm.comp_id_linking_atom               CAJ 
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom   OG 
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession     ? 
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession      ? 
# 
