data_0R6
# 
_chem_comp.id                                    0R6 
_chem_comp.name                                  
;2'-deoxy-5-[(4-ethynylphenyl)ethynyl]cytidine 5'-(tetrahydrogen triphosphate)
;
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C19 H20 N3 O13 P3" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2012-04-27 
_chem_comp.pdbx_modified_date                    2013-03-22 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        591.296 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     0R6 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        4ELU 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
0R6 O2    O2    O 0 1 N N N 18.487 -20.718 -5.683  1.368  -3.188 1.249  O2    0R6 1  
0R6 C2    C2    C 0 1 N N N 18.863 -19.539 -5.879  2.349  -2.489 1.059  C2    0R6 2  
0R6 N3    N3    N 0 1 N N N 19.013 -18.686 -4.829  3.222  -2.322 2.050  N3    0R6 3  
0R6 C4    C4    C 0 1 N N N 19.434 -17.413 -5.032  4.302  -1.571 1.888  C4    0R6 4  
0R6 N4    N4    N 0 1 N N N 19.573 -16.571 -3.979  5.197  -1.403 2.916  N4    0R6 5  
0R6 C5    C5    C 0 1 N N N 19.727 -16.928 -6.401  4.524  -0.922 0.591  C5    0R6 6  
0R6 C29   C29   C 0 1 N N N 20.132 -15.694 -6.578  5.676  -0.101 0.364  C29   0R6 7  
0R6 C30   C30   C 0 1 N N N 20.520 -14.564 -6.744  6.620  0.572  0.179  C30   0R6 8  
0R6 C31   C31   C 0 1 Y N N 20.927 -13.329 -6.949  7.771  1.392  -0.047 C31   0R6 9  
0R6 C36   C36   C 0 1 Y N N 20.646 -12.300 -6.048  7.963  2.001  -1.293 C36   0R6 10 
0R6 C35   C35   C 0 1 Y N N 21.103 -10.996 -6.299  9.061  2.784  -1.507 C35   0R6 11 
0R6 C34   C34   C 0 1 Y N N 21.856 -10.722 -7.447  9.993  2.977  -0.484 C34   0R6 12 
0R6 C37   C37   C 0 1 N N N 22.295 -9.537  -7.682  11.144 3.799  -0.710 C37   0R6 13 
0R6 C38   C38   C 0 1 N N N 22.733 -8.363  -7.921  12.088 4.472  -0.896 C38   0R6 14 
0R6 C33   C33   C 0 1 Y N N 22.156 -11.738 -8.334  9.802  2.370  0.760  C33   0R6 15 
0R6 C32   C32   C 0 1 Y N N 21.690 -13.028 -8.077  8.702  1.590  0.978  C32   0R6 16 
0R6 C6    C6    C 0 1 N N N 19.556 -17.854 -7.441  3.589  -1.127 -0.406 C6    0R6 17 
0R6 N1    N1    N 0 1 N N N 19.143 -19.118 -7.194  2.516  -1.919 -0.146 N1    0R6 18 
0R6 "C1'" "C1'" C 0 1 N N R 18.908 -20.126 -8.256  1.517  -2.146 -1.194 "C1'" 0R6 19 
0R6 "C2'" "C2'" C 0 1 N N N 17.461 -19.887 -8.681  1.508  -3.633 -1.596 "C2'" 0R6 20 
0R6 "C3'" "C3'" C 0 1 N N S 17.590 -19.018 -9.927  0.054  -4.091 -1.322 "C3'" 0R6 21 
0R6 "O3'" "O3'" O 0 1 N N N 16.465 -19.175 -10.814 -0.414 -4.950 -2.364 "O3'" 0R6 22 
0R6 "O4'" "O4'" O 0 1 N N N 19.698 -19.905 -9.422  0.206  -1.826 -0.697 "O4'" 0R6 23 
0R6 "C4'" "C4'" C 0 1 N N R 18.880 -19.541 -10.537 -0.716 -2.746 -1.324 "C4'" 0R6 24 
0R6 "C5'" "C5'" C 0 1 N N N 19.574 -18.540 -11.458 -2.003 -2.862 -0.505 "C5'" 0R6 25 
0R6 "O5'" "O5'" O 0 1 N N N 19.926 -17.391 -10.681 -2.750 -1.648 -0.619 "O5'" 0R6 26 
0R6 PA    PA    P 0 1 N N N 19.742 -15.959 -11.359 -4.163 -1.417 0.116  PA    0R6 27 
0R6 O1A   O1A   O 0 1 N N N 20.072 -15.997 -12.826 -4.011 -1.662 1.568  O1A   0R6 28 
0R6 O2A   O2A   O 0 1 N N N 20.441 -14.910 -10.527 -5.255 -2.435 -0.488 O2A   0R6 29 
0R6 O3A   O3A   O 0 1 N N N 18.164 -15.738 -11.076 -4.652 0.098  -0.125 O3A   0R6 30 
0R6 PB    PB    P 0 1 N N N 16.923 -15.889 -12.098 -5.698 1.068  0.622  PB    0R6 31 
0R6 O1B   O1B   O 0 1 N N N 17.316 -16.656 -13.332 -6.895 0.292  1.015  O1B   0R6 32 
0R6 O2B   O2B   O 0 1 N N N 15.787 -16.436 -11.267 -5.008 1.693  1.935  O2B   0R6 33 
0R6 O3B   O3B   O 0 1 N N N 16.524 -14.362 -12.393 -6.133 2.256  -0.374 O3B   0R6 34 
0R6 PG    PG    P 0 1 N N N 17.104 -13.406 -13.561 -7.326 3.336  -0.372 PG    0R6 35 
0R6 O3G   O3G   O 0 1 N N N 18.212 -14.168 -14.259 -8.706 2.613  -0.780 O3G   0R6 36 
0R6 O1G   O1G   O 0 1 N N N 15.886 -13.142 -14.426 -7.458 3.924  0.980  O1G   0R6 37 
0R6 O2G   O2G   O 0 1 N N N 17.592 -12.198 -12.798 -6.997 4.501  -1.434 O2G   0R6 38 
0R6 H1    H1    H 0 1 N N N 19.365 -16.889 -3.054  5.042  -1.837 3.770  H1    0R6 39 
0R6 H2    H2    H 0 1 N N N 19.883 -15.632 -4.127  5.985  -0.852 2.788  H2    0R6 40 
0R6 H3    H3    H 0 1 N N N 20.075 -12.508 -5.155  7.243  1.852  -2.083 H3    0R6 41 
0R6 H4    H4    H 0 1 N N N 20.873 -10.202 -5.604  9.210  3.254  -2.468 H4    0R6 42 
0R6 H5    H5    H 0 1 N N N 23.097 -7.387  -8.120  12.932 5.074  -1.062 H5    0R6 43 
0R6 H6    H6    H 0 1 N N N 22.745 -11.536 -9.217  10.521 2.523  1.551  H6    0R6 44 
0R6 H7    H7    H 0 1 N N N 21.928 -13.818 -8.774  8.554  1.121  1.940  H7    0R6 45 
0R6 H8    H8    H 0 1 N N N 19.758 -17.552 -8.458  3.714  -0.673 -1.378 H8    0R6 46 
0R6 H9    H9    H 0 1 N N N 19.029 -21.147 -7.865  1.745  -1.528 -2.062 H9    0R6 47 
0R6 H10   H10   H 0 1 N N N 16.902 -19.362 -7.892  1.750  -3.744 -2.653 H10   0R6 48 
0R6 H11   H11   H 0 1 N N N 16.959 -20.837 -8.916  2.210  -4.199 -0.983 H11   0R6 49 
0R6 H12   H12   H 0 1 N N N 17.716 -17.965 -9.634  -0.022 -4.582 -0.352 H12   0R6 50 
0R6 H13   H13   H 0 1 N N N 15.682 -18.837 -10.396 0.095  -5.766 -2.461 H13   0R6 51 
0R6 H14   H14   H 0 1 N N N 18.643 -20.440 -11.125 -0.935 -2.431 -2.344 H14   0R6 52 
0R6 H15   H15   H 0 1 N N N 18.893 -18.246 -12.270 -2.600 -3.692 -0.882 H15   0R6 53 
0R6 H16   H16   H 0 1 N N N 20.481 -18.993 -11.885 -1.754 -3.038 0.541  H16   0R6 54 
0R6 H17   H17   H 0 1 N N N 21.019 -14.399 -11.081 -5.407 -2.331 -1.437 H17   0R6 55 
0R6 H18   H18   H 0 1 N N N 15.460 -17.235 -11.663 -4.216 2.216  1.752  H18   0R6 56 
0R6 H19   H19   H 0 1 N N N 17.951 -14.360 -15.152 -8.692 2.205  -1.656 H19   0R6 57 
0R6 H20   H20   H 0 1 N N N 17.036 -11.453 -12.995 -7.675 5.189  -1.486 H20   0R6 58 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
0R6 O1G   PG    DOUB N N 1  
0R6 O3G   PG    SING N N 2  
0R6 PG    O2G   SING N N 3  
0R6 PG    O3B   SING N N 4  
0R6 O1B   PB    DOUB N N 5  
0R6 O1A   PA    DOUB N N 6  
0R6 O3B   PB    SING N N 7  
0R6 PB    O2B   SING N N 8  
0R6 PB    O3A   SING N N 9  
0R6 "C5'" "O5'" SING N N 10 
0R6 "C5'" "C4'" SING N N 11 
0R6 PA    O3A   SING N N 12 
0R6 PA    "O5'" SING N N 13 
0R6 PA    O2A   SING N N 14 
0R6 "O3'" "C3'" SING N N 15 
0R6 "C4'" "C3'" SING N N 16 
0R6 "C4'" "O4'" SING N N 17 
0R6 "C3'" "C2'" SING N N 18 
0R6 "O4'" "C1'" SING N N 19 
0R6 "C2'" "C1'" SING N N 20 
0R6 C33   C32   DOUB Y N 21 
0R6 C33   C34   SING Y N 22 
0R6 "C1'" N1    SING N N 23 
0R6 C32   C31   SING Y N 24 
0R6 C38   C37   TRIP N N 25 
0R6 C37   C34   SING N N 26 
0R6 C34   C35   DOUB Y N 27 
0R6 C6    N1    SING N N 28 
0R6 C6    C5    DOUB N N 29 
0R6 N1    C2    SING N N 30 
0R6 C31   C30   SING N N 31 
0R6 C31   C36   DOUB Y N 32 
0R6 C30   C29   TRIP N N 33 
0R6 C29   C5    SING N N 34 
0R6 C5    C4    SING N N 35 
0R6 C35   C36   SING Y N 36 
0R6 C2    O2    DOUB N N 37 
0R6 C2    N3    SING N N 38 
0R6 C4    N3    DOUB N N 39 
0R6 C4    N4    SING N N 40 
0R6 N4    H1    SING N N 41 
0R6 N4    H2    SING N N 42 
0R6 C36   H3    SING N N 43 
0R6 C35   H4    SING N N 44 
0R6 C38   H5    SING N N 45 
0R6 C33   H6    SING N N 46 
0R6 C32   H7    SING N N 47 
0R6 C6    H8    SING N N 48 
0R6 "C1'" H9    SING N N 49 
0R6 "C2'" H10   SING N N 50 
0R6 "C2'" H11   SING N N 51 
0R6 "C3'" H12   SING N N 52 
0R6 "O3'" H13   SING N N 53 
0R6 "C4'" H14   SING N N 54 
0R6 "C5'" H15   SING N N 55 
0R6 "C5'" H16   SING N N 56 
0R6 O2A   H17   SING N N 57 
0R6 O2B   H18   SING N N 58 
0R6 O3G   H19   SING N N 59 
0R6 O2G   H20   SING N N 60 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
0R6 SMILES           ACDLabs              12.01 "O=P(O)(O)OP(=O)(O)OP(=O)(O)OCC3OC(N2C(=O)N=C(N)C(C#Cc1ccc(C#C)cc1)=C2)CC3O" 
0R6 InChI            InChI                1.03  
"InChI=1S/C19H20N3O13P3/c1-2-12-3-5-13(6-4-12)7-8-14-10-22(19(24)21-18(14)20)17-9-15(23)16(33-17)11-32-37(28,29)35-38(30,31)34-36(25,26)27/h1,3-6,10,15-17,23H,9,11H2,(H,28,29)(H,30,31)(H2,20,21,24)(H2,25,26,27)/t15-,16+,17+/m0/s1" 
0R6 InChIKey         InChI                1.03  CPJFKEBWOPVPDF-GVDBMIGSSA-N 
0R6 SMILES_CANONICAL CACTVS               3.370 "NC1=NC(=O)N(C=C1C#Cc2ccc(cc2)C#C)[C@H]3C[C@H](O)[C@@H](CO[P](O)(=O)O[P](O)(=O)O[P](O)(O)=O)O3" 
0R6 SMILES           CACTVS               3.370 "NC1=NC(=O)N(C=C1C#Cc2ccc(cc2)C#C)[CH]3C[CH](O)[CH](CO[P](O)(=O)O[P](O)(=O)O[P](O)(O)=O)O3" 
0R6 SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "C#Cc1ccc(cc1)C#CC2=CN(C(=O)N=C2N)[C@H]3C[C@@H]([C@H](O3)COP(=O)(O)OP(=O)(O)OP(=O)(O)O)O" 
0R6 SMILES           "OpenEye OEToolkits" 1.7.6 "C#Cc1ccc(cc1)C#CC2=CN(C(=O)N=C2N)C3CC(C(O3)COP(=O)(O)OP(=O)(O)OP(=O)(O)O)O" 
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
0R6 "SYSTEMATIC NAME" ACDLabs              12.01 
;2'-deoxy-5-[(4-ethynylphenyl)ethynyl]cytidine 5'-(tetrahydrogen triphosphate)
;
0R6 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 "[[(2R,3S,5R)-5-[4-azanyl-5-[2-(4-ethynylphenyl)ethynyl]-2-oxidanylidene-pyrimidin-1-yl]-3-oxidanyl-oxolan-2-yl]methoxy-oxidanyl-phosphoryl] phosphono hydrogen phosphate" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
0R6 "Create component" 2012-04-27 RCSB 
0R6 "Initial release"  2013-03-27 RCSB 
# 
