data_0L6
# 
_chem_comp.id                                    0L6 
_chem_comp.name                                  
;5-(5-aminopent-1-yn-1-yl)-2'-deoxycytidine 5'-(tetrahydrogen triphosphate)
;
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C14 H25 N4 O13 P3" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2012-02-08 
_chem_comp.pdbx_modified_date                    2012-05-11 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        550.289 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     0L6 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        4DFM 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
0L6 O2    O2  O 0 1 N N N 18.050 -21.118 -5.668  2.473  -2.579 1.611  O2  DCX 1  
0L6 C2    C2  C 0 1 N N N 18.444 -19.944 -5.862  3.350  -1.774 1.363  C2  DCX 2  
0L6 N3    N3  N 0 1 N N N 18.562 -19.090 -4.842  4.164  -1.379 2.351  N3  DCX 3  
0L6 C4    C4  C 0 1 N N N 18.985 -17.840 -5.039  5.189  -0.472 2.175  C4  DCX 4  
0L6 N4    N4  N 0 1 N N N 19.098 -16.992 -3.986  5.982  -0.121 3.251  N4  DCX 5  
0L6 C5    C5  C 0 1 N N N 19.298 -17.399 -6.292  5.427  0.080  0.960  C5  DCX 6  
0L6 C29   C29 C 0 1 N N N 19.711 -16.186 -6.401  6.489  1.022  0.771  C29 DCX 7  
0L6 C30   C30 C 0 1 N N N 20.087 -15.081 -6.501  7.359  1.795  0.615  C30 DCX 8  
0L6 C31   C31 C 0 1 N N N 20.495 -13.663 -6.607  8.450  2.763  0.420  C31 DCX 9  
0L6 C32   C32 C 0 1 N N N 21.448 -13.348 -5.441  8.479  3.212  -1.043 C32 DCX 10 
0L6 C33   C33 C 0 1 N N N 22.652 -14.295 -5.444  9.613  4.219  -1.245 C33 DCX 11 
0L6 N34   N34 N 0 1 N N N 23.144 -14.472 -4.091  9.640  4.649  -2.649 N34 DCX 12 
0L6 C6    C6  C 0 1 N N N 19.198 -18.268 -7.396  4.532  -0.334 -0.190 C6  DCX 13 
0L6 N1    N1  N 0 1 N N N 18.769 -19.524 -7.171  3.473  -1.313 0.103  N1  DCX 14 
0L6 "C1'" C1* C 0 1 N N R 18.615 -20.486 -8.268  2.563  -1.768 -0.951 C1* DCX 15 
0L6 "O4'" O4* O 0 1 N N N 19.467 -20.190 -9.385  1.190  -1.618 -0.530 O4* DCX 16 
0L6 "C2'" C2* C 0 1 N N N 17.182 -20.328 -8.764  2.740  -3.283 -1.196 C2* DCX 17 
0L6 "C3'" C3* C 0 1 N N S 17.348 -19.456 -10.000 1.307  -3.787 -1.480 C3* DCX 18 
0L6 "O3'" O3* O 0 1 N N N 16.269 -19.623 -10.924 1.223  -4.346 -2.792 O3* DCX 19 
0L6 "C4'" C4* C 0 1 N N R 18.681 -19.930 -10.554 0.434  -2.515 -1.372 C4* DCX 20 
0L6 "C5'" C5* C 0 1 N N N 19.347 -18.925 -11.493 -0.913 -2.846 -0.725 C5* DCX 21 
0L6 "O5'" O5* O 0 1 N N N 19.652 -17.723 -10.793 -1.747 -1.686 -0.741 O5* DCX 22 
0L6 PA    PA  P 0 1 N N N 19.427 -16.305 -11.516 -3.240 -1.672 -0.139 PA  DCX 23 
0L6 O1A   O1A O 0 1 N N N 20.172 -15.257 -10.720 -4.175 -2.659 -1.001 O1A DCX 24 
0L6 O2A   O2A O 0 1 N N N 19.694 -16.388 -13.009 -3.209 -2.126 1.269  O2A DCX 25 
0L6 O3A   O3A O 0 1 N N N 17.854 -16.113 -11.188 -3.832 -0.176 -0.208 O3A DCX 26 
0L6 PB    PB  P 0 1 N N N 16.648 -16.371 -12.230 -5.027 0.590  0.553  PB  DCX 27 
0L6 O1B   O1B O 0 1 N N N 17.138 -17.120 -13.454 -6.185 -0.320 0.696  O1B DCX 28 
0L6 O2B   O2B O 0 1 N N N 15.525 -16.990 -11.429 -4.525 1.053  2.011  O2B DCX 29 
0L6 O3B   O3B O 0 1 N N N 16.168 -14.865 -12.587 -5.464 1.884  -0.300 O3B DCX 30 
0L6 PG    PG  P 0 1 N N N 16.721 -13.960 -13.811 -6.741 2.864  -0.271 PG  DCX 31 
0L6 O1G   O1G O 0 1 N N N 17.280 -12.733 -13.124 -6.569 3.934  0.919  O1G DCX 32 
0L6 O2G   O2G O 0 1 N N N 17.774 -14.796 -14.506 -6.855 3.638  -1.678 O2G DCX 33 
0L6 O3G   O3G O 0 1 N N N 15.489 -13.652 -14.627 -7.968 2.068  -0.045 O3G DCX 34 
0L6 H1    H1  H 0 1 N N N 18.330 -19.392 -3.917  4.027  -1.751 3.236  H1  DCX 35 
0L6 H2    H2  H 0 1 N N N 18.833 -17.466 -3.146  5.817  -0.513 4.123  H2  DCX 36 
0L6 H3    H3  H 0 1 N N N 20.045 -16.681 -3.909  6.704  0.516  3.134  H3  DCX 37 
0L6 H4    H4  H 0 1 N N N 21.010 -13.494 -7.564  8.287  3.629  1.062  H4  DCX 38 
0L6 H5    H5  H 0 1 N N N 19.608 -13.015 -6.548  9.401  2.295  0.675  H5  DCX 39 
0L6 H6    H6  H 0 1 N N N 21.805 -12.312 -5.538  8.642  2.346  -1.685 H6  DCX 40 
0L6 H7    H7  H 0 1 N N N 20.904 -13.461 -4.492  7.528  3.680  -1.298 H7  DCX 41 
0L6 H8    H8  H 0 1 N N N 22.348 -15.270 -5.852  9.450  5.084  -0.603 H8  DCX 42 
0L6 H9    H9  H 0 1 N N N 23.450 -13.868 -6.069  10.564 3.751  -0.990 H9  DCX 43 
0L6 H10   H10 H 0 1 N N N 23.929 -15.091 -4.100  8.748  5.028  -2.929 H10 DCX 44 
0L6 H11   H11 H 0 1 N N N 23.422 -13.586 -3.719  10.382 5.315  -2.809 H11 DCX 45 
0L6 H13   H13 H 0 1 N N N 20.198 -18.339 -7.849  4.060  0.561  -0.595 H13 DCX 46 
0L6 H14   H14 H 0 1 N N N 18.503 -17.808 -8.113  5.170  -0.753 -0.968 H14 DCX 47 
0L6 H15   H15 H 0 1 N N N 18.775 -21.513 -7.909  2.741  -1.211 -1.871 H15 DCX 48 
0L6 H16   H16 H 0 1 N N N 16.554 -19.831 -8.010  3.384  -3.458 -2.058 H16 DCX 49 
0L6 H17   H17 H 0 1 N N N 16.742 -21.303 -9.023  3.150  -3.768 -0.310 H17 DCX 50 
0L6 H18   H18 H 0 1 N N N 17.435 -18.403 -9.693  1.006  -4.522 -0.733 H18 DCX 51 
0L6 H19   H19 H 0 1 N N N 15.463 -19.312 -10.529 1.798  -5.111 -2.931 H19 DCX 52 
0L6 H20   H20 H 0 1 N N N 18.517 -20.867 -11.107 0.283  -2.073 -2.358 H20 DCX 53 
0L6 H21   H21 H 0 1 N N N 18.664 -18.697 -12.325 -1.396 -3.649 -1.281 H21 DCX 54 
0L6 H22   H22 H 0 1 N N N 20.276 -19.360 -11.890 -0.752 -3.164 0.306  H22 DCX 55 
0L6 H23   H23 H 0 1 N N N 20.740 -14.763 -11.299 -4.242 -2.421 -1.936 H23 DCX 56 
0L6 H24   H24 H 0 1 N N N 15.267 -17.812 -11.828 -3.766 1.653  1.994  H24 DCX 57 
0L6 H25   H25 H 0 1 N N N 16.743 -11.979 -13.336 -5.783 4.492  0.836  H25 DCX 58 
0L6 H26   H26 H 0 1 N N N 17.483 -15.006 -15.386 -7.604 4.248  -1.731 H26 DCX 59 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
0L6 O3G   PG    DOUB N N 1  
0L6 O2G   PG    SING N N 2  
0L6 PG    O1G   SING N N 3  
0L6 PG    O3B   SING N N 4  
0L6 O1B   PB    DOUB N N 5  
0L6 O2A   PA    DOUB N N 6  
0L6 O3B   PB    SING N N 7  
0L6 PB    O2B   SING N N 8  
0L6 PB    O3A   SING N N 9  
0L6 PA    O3A   SING N N 10 
0L6 PA    "O5'" SING N N 11 
0L6 PA    O1A   SING N N 12 
0L6 "C5'" "O5'" SING N N 13 
0L6 "C5'" "C4'" SING N N 14 
0L6 "O3'" "C3'" SING N N 15 
0L6 "C4'" "C3'" SING N N 16 
0L6 "C4'" "O4'" SING N N 17 
0L6 "C3'" "C2'" SING N N 18 
0L6 "O4'" "C1'" SING N N 19 
0L6 "C2'" "C1'" SING N N 20 
0L6 "C1'" N1    SING N N 21 
0L6 C6    N1    SING N N 22 
0L6 C6    C5    SING N N 23 
0L6 N1    C2    SING N N 24 
0L6 C31   C30   SING N N 25 
0L6 C31   C32   SING N N 26 
0L6 C30   C29   TRIP N N 27 
0L6 C29   C5    SING N N 28 
0L6 C5    C4    DOUB N N 29 
0L6 C2    O2    DOUB N N 30 
0L6 C2    N3    SING N N 31 
0L6 C33   C32   SING N N 32 
0L6 C33   N34   SING N N 33 
0L6 C4    N3    SING N N 34 
0L6 C4    N4    SING N N 35 
0L6 N3    H1    SING N N 36 
0L6 N4    H2    SING N N 37 
0L6 N4    H3    SING N N 38 
0L6 C31   H4    SING N N 39 
0L6 C31   H5    SING N N 40 
0L6 C32   H6    SING N N 41 
0L6 C32   H7    SING N N 42 
0L6 C33   H8    SING N N 43 
0L6 C33   H9    SING N N 44 
0L6 N34   H10   SING N N 45 
0L6 N34   H11   SING N N 46 
0L6 C6    H13   SING N N 47 
0L6 C6    H14   SING N N 48 
0L6 "C1'" H15   SING N N 49 
0L6 "C2'" H16   SING N N 50 
0L6 "C2'" H17   SING N N 51 
0L6 "C3'" H18   SING N N 52 
0L6 "O3'" H19   SING N N 53 
0L6 "C4'" H20   SING N N 54 
0L6 "C5'" H21   SING N N 55 
0L6 "C5'" H22   SING N N 56 
0L6 O1A   H23   SING N N 57 
0L6 O2B   H24   SING N N 58 
0L6 O1G   H25   SING N N 59 
0L6 O2G   H26   SING N N 60 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
0L6 SMILES           ACDLabs              12.01 "O=P(O)(O)OP(=O)(O)OP(=O)(O)OCC2OC(N1C(=O)NC(=C(C#CCCCN)C1)N)CC2O" 
0L6 InChI            InChI                1.03  
"InChI=1S/C14H25N4O13P3/c15-5-3-1-2-4-9-7-18(14(20)17-13(9)16)12-6-10(19)11(29-12)8-28-33(24,25)31-34(26,27)30-32(21,22)23/h10-12,19H,1,3,5-8,15-16H2,(H,17,20)(H,24,25)(H,26,27)(H2,21,22,23)/t10-,11+,12+/m0/s1" 
0L6 InChIKey         InChI                1.03  QDKMIMUSGQEUSC-QJPTWQEYSA-N 
0L6 SMILES_CANONICAL CACTVS               3.370 "NCCCC#CC1=C(N)NC(=O)N(C1)[C@H]2C[C@H](O)[C@@H](CO[P](O)(=O)O[P](O)(=O)O[P](O)(O)=O)O2" 
0L6 SMILES           CACTVS               3.370 "NCCCC#CC1=C(N)NC(=O)N(C1)[CH]2C[CH](O)[CH](CO[P](O)(=O)O[P](O)(=O)O[P](O)(O)=O)O2" 
0L6 SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "C1[C@@H]([C@H](O[C@H]1N2CC(=C(NC2=O)N)C#CCCCN)COP(=O)(O)OP(=O)(O)OP(=O)(O)O)O" 
0L6 SMILES           "OpenEye OEToolkits" 1.7.6 "C1C(C(OC1N2CC(=C(NC2=O)N)C#CCCCN)COP(=O)(O)OP(=O)(O)OP(=O)(O)O)O" 
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
0L6 "SYSTEMATIC NAME" ACDLabs              12.01 
;5-(5-aminopent-1-yn-1-yl)-2'-deoxycytidine 5'-(tetrahydrogen triphosphate)
;
0L6 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 "[[(2R,3S,5R)-5-[6-azanyl-5-(5-azanylpent-1-ynyl)-2-oxidanylidene-1,4-dihydropyrimidin-3-yl]-3-oxidanyl-oxolan-2-yl]methoxy-oxidanyl-phosphoryl] phosphono hydrogen phosphate" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
0L6 "Create component" 2012-02-08 RCSB 
# 
