data_0E6
# 
_chem_comp.id                                    0E6 
_chem_comp.name                                  
;amino{[(4S)-4-{[(benzyloxy)carbonyl]amino}-5-{[(2S)-1-(benzyloxy)-4-chloro-3-oxobutan-2-yl]amino}-5-oxopentyl]amino}met
haniminium
;
_chem_comp.type                                  peptide-like 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C25 H33 Cl N5 O5" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         "benzyloxycarbonyl-Arg-Ser(O-Bzl) chloromethylketone" 
_chem_comp.pdbx_formal_charge                    1 
_chem_comp.pdbx_initial_date                     2008-11-07 
_chem_comp.pdbx_modified_date                    2024-09-27 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        519.013 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     0E6 
_chem_comp.pdbx_model_coordinates_details        "not provided" 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        1THE 
_chem_comp.pdbx_subcomponent_list                "PHQ ARG SEM 0QE" 
_chem_comp.pdbx_processing_site                  RCSB 
_chem_comp.pdbx_pcm                              Y 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
0E6 C1    C1  C  0 1 N N N N N N 9.212  63.884 47.433 3.243  0.350  -0.821 C1    PHQ 1  
0E6 O1    O1  O  0 1 N N N N N N 10.416 63.874 47.701 3.123  -0.573 -1.602 O1    PHQ 2  
0E6 O2    O2  O  0 1 N N N N N N 8.276  64.810 48.097 4.469  0.790  -0.481 O2    PHQ 3  
0E6 C2    C2  C  0 1 N N N N N N 8.963  65.785 48.991 5.603  0.115  -1.086 C2    PHQ 4  
0E6 C3    C3  C  0 1 Y N N N N N 9.233  67.112 48.330 6.882  0.739  -0.591 C3    PHQ 5  
0E6 C4    C4  C  0 1 Y N N N N N 8.213  67.798 47.686 7.494  0.250  0.548  C4    PHQ 6  
0E6 C5    C5  C  0 1 Y N N N N N 8.401  69.068 47.163 8.667  0.823  1.002  C5    PHQ 7  
0E6 C6    C6  C  0 1 Y N N N N N 9.626  69.660 47.249 9.229  1.884  0.317  C6    PHQ 8  
0E6 C7    C7  C  0 1 Y N N N N N 10.684 68.971 47.858 8.618  2.372  -0.823 C7    PHQ 9  
0E6 C8    C8  C  0 1 Y N N N N N 10.474 67.698 48.401 7.447  1.796  -1.280 C8    PHQ 10 
0E6 N     N1  N  0 1 N N N N N N 8.706  63.122 46.474 2.147  0.938  -0.299 N     ARG 11 
0E6 CA    C9  C  0 1 N N S N N N 9.532  62.111 45.884 0.813  0.463  -0.674 CA    ARG 12 
0E6 C     C10 C  0 1 N N N N N N 10.264 62.687 44.647 -0.185 1.577  -0.494 C     ARG 13 
0E6 O     O3  O  0 1 N N N N N N 9.672  63.366 43.801 0.182  2.662  -0.093 O     ARG 14 
0E6 CB    C11 C  0 1 N N N N N N 8.685  60.875 45.544 0.424  -0.719 0.217  CB    ARG 15 
0E6 CG    C12 C  0 1 N N N N N N 7.542  60.595 46.545 1.363  -1.895 -0.057 CG    ARG 16 
0E6 CD    C13 C  0 1 N N N N N N 7.834  59.444 47.468 0.974  -3.077 0.833  CD    ARG 17 
0E6 NE    N2  N  0 1 N N N N N N 7.686  59.789 48.869 1.874  -4.203 0.571  NE    ARG 18 
0E6 CZ    C14 C  0 1 N N N N N N 6.952  60.795 49.330 1.717  -5.377 1.255  CZ    ARG 19 
0E6 NH1   N3  N  0 1 N N N N N N 5.666  60.610 49.553 0.746  -5.497 2.159  NH1   ARG 20 
0E6 NH2   N4  N  1 1 N N N N N N 7.560  61.681 50.101 2.535  -6.401 1.017  NH2   ARG 21 
0E6 C21   C16 C  0 1 N N N N N N 12.296 62.107 42.273 -2.925 2.482  0.827  C     SEM 22 
0E6 O21   O5  O  0 1 N N N N N N 12.873 62.449 41.239 -2.714 1.538  1.550  O     SEM 23 
0E6 C31   C17 C  0 1 N N S N N N 12.322 63.021 43.468 -2.457 2.453  -0.605 CA    SEM 24 
0E6 N3    N5  N  0 1 N N N N N N 11.566 62.480 44.586 -1.486 1.369  -0.780 N     SEM 25 
0E6 C41   C18 C  0 1 N N N N N N 13.770 63.235 43.848 -3.654 2.218  -1.528 CB    SEM 26 
0E6 "O'"  O6  O  0 1 N N N N N N 14.169 61.982 44.394 -4.339 1.030  -1.128 OG    SEM 27 
0E6 "C'"  C19 C  0 1 N N N N N N 15.516 62.110 44.837 -5.479 0.718  -1.930 "C'"  SEM 28 
0E6 "C1'" C20 C  0 1 Y N N N N N 16.310 60.833 44.777 -6.120 -0.548 -1.421 "C1'" SEM 29 
0E6 "C2'" C21 C  0 1 Y N N N N N 15.667 59.599 44.776 -7.106 -0.483 -0.455 "C2'" SEM 30 
0E6 "C3'" C22 C  0 1 Y N N N N N 16.374 58.419 44.689 -7.694 -1.643 0.012  "C3'" SEM 31 
0E6 "C4'" C23 C  0 1 Y N N N N N 17.746 58.451 44.601 -7.297 -2.869 -0.488 "C4'" SEM 32 
0E6 "C5'" C24 C  0 1 Y N N N N N 18.416 59.672 44.618 -6.311 -2.934 -1.456 "C5'" SEM 33 
0E6 "C6'" C25 C  0 1 Y N N N N N 17.690 60.862 44.709 -5.727 -1.773 -1.926 "C6'" SEM 34 
0E6 C11   C15 C  0 1 N N N N N N 12.190 60.667 42.624 -3.655 3.689  1.356  C1    0QE 35 
0E6 CL    CL  CL 0 0 N Y N N N N 10.550 60.258 42.074 -4.080 3.423  3.088  CL1   0QE 36 
0E6 H21   H2  H  0 1 N N N N N N 8.320  65.961 49.866 5.584  -0.941 -0.814 H21   PHQ 37 
0E6 H22   H3  H  0 1 N N N N N N 9.926  65.351 49.297 5.547  0.212  -2.170 H22   PHQ 38 
0E6 H41   H4  H  0 1 N N N N N N 7.245  67.329 47.589 7.055  -0.578 1.084  H41   PHQ 39 
0E6 H51   H5  H  0 1 N N N N N N 7.580  69.586 46.689 9.145  0.442  1.892  H51   PHQ 40 
0E6 H61   H6  H  0 1 N N N N N N 9.780  70.652 46.851 10.146 2.332  0.672  H61   PHQ 41 
0E6 H71   H7  H  0 1 N N N N N N 11.663 69.423 47.908 9.056  3.201  -1.359 H71   PHQ 42 
0E6 H81   H8  H  0 1 N N N N N N 11.290 67.175 48.877 6.971  2.175  -2.172 H81   PHQ 43 
0E6 H     H9  H  0 1 N N N N N N 7.763  63.251 46.167 2.243  1.675  0.324  H     ARG 44 
0E6 HA    H11 H  0 1 N N N N N N 10.303 61.790 46.600 0.820  0.146  -1.717 HA    ARG 45 
0E6 HB2   H12 H  0 1 N N N N N N 8.235  61.035 44.553 0.503  -0.426 1.264  HB2   ARG 46 
0E6 HB3   H13 H  0 1 N N N N N N 9.351  60.000 45.537 -0.602 -1.015 -0.001 HB3   ARG 47 
0E6 HG2   H14 H  0 1 N N N N N N 7.390  61.497 47.156 1.284  -2.187 -1.104 HG2   ARG 48 
0E6 HG3   H15 H  0 1 N N N N N N 6.633  60.356 45.973 2.389  -1.598 0.161  HG3   ARG 49 
0E6 HD2   H16 H  0 1 N N N N N N 7.132  58.629 47.237 1.053  -2.784 1.880  HD2   ARG 50 
0E6 HD3   H17 H  0 1 N N N N N N 8.872  59.121 47.300 -0.052 -3.373 0.616  HD3   ARG 51 
0E6 HE    H18 H  0 1 N N N N N N 8.173  59.227 49.538 2.581  -4.116 -0.087 HE    ARG 52 
0E6 HH11  H19 H  0 0 N N N N N N 5.204  61.127 50.274 0.150  -4.751 2.333  HH11  ARG 53 
0E6 HH12  H20 H  0 0 N N N N N N 5.152  59.953 49.002 0.635  -6.329 2.644  HH12  ARG 54 
0E6 HH21  H21 H  0 0 N N N N N N 7.044  62.168 50.806 2.423  -7.234 1.502  HH21  ARG 55 
0E6 HH22  H22 H  0 0 N N N N N N 8.535  61.864 49.979 3.242  -6.314 0.359  HH22  ARG 56 
0E6 H3    H27 H  0 1 N N N N N N 11.843 63.977 43.210 -1.987 3.405  -0.854 HA    SEM 57 
0E6 HN32  H29 H  0 0 N N N N N N 12.028 61.956 45.302 -1.780 0.502  -1.101 H     SEM 58 
0E6 H411  H30 H  0 0 N N N N N N 14.379 63.503 42.972 -4.334 3.068  -1.465 HB2   SEM 59 
0E6 H42   H31 H  0 1 N N N N N N 13.876 64.045 44.585 -3.305 2.109  -2.555 HB3   SEM 60 
0E6 "H'1" H32 H  0 1 N N N N N N 16.015 62.849 44.193 -6.197 1.536  -1.875 "H'1" SEM 61 
0E6 "H'2" H33 H  0 1 N N N N N N 15.497 62.448 45.884 -5.168 0.577  -2.965 "H'2" SEM 62 
0E6 "H2'" H34 H  0 1 N N N N N N 14.590 59.565 44.845 -7.417 0.475  -0.064 "H2'" SEM 63 
0E6 "H3'" H35 H  0 1 N N N N N N 15.853 57.473 44.690 -8.464 -1.593 0.768  "H3'" SEM 64 
0E6 "H4'" H36 H  0 1 N N N N N N 18.304 57.530 44.519 -7.755 -3.776 -0.123 "H4'" SEM 65 
0E6 "H5'" H37 H  0 1 N N N N N N 19.494 59.699 44.561 -6.001 -3.892 -1.847 "H5'" SEM 66 
0E6 "H6'" H38 H  0 1 N N N N N N 18.209 61.809 44.726 -4.959 -1.823 -2.684 "H6'" SEM 67 
0E6 H11   H24 H  0 1 N N N N N N 12.956 60.063 42.115 -3.016 4.568  1.270  H     0QE 68 
0E6 H12   H25 H  0 1 N N N N N N 12.314 60.498 43.704 -4.566 3.845  0.778  HA    0QE 69 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
0E6 C1    O1    DOUB N N 1  
0E6 C1    O2    SING N N 2  
0E6 O2    C2    SING N N 3  
0E6 C2    C3    SING N N 4  
0E6 C2    H21   SING N N 5  
0E6 C2    H22   SING N N 6  
0E6 C3    C4    DOUB Y N 7  
0E6 C3    C8    SING Y N 8  
0E6 C4    C5    SING Y N 9  
0E6 C4    H41   SING N N 10 
0E6 C5    C6    DOUB Y N 11 
0E6 C5    H51   SING N N 12 
0E6 C6    C7    SING Y N 13 
0E6 C6    H61   SING N N 14 
0E6 C7    C8    DOUB Y N 15 
0E6 C7    H71   SING N N 16 
0E6 C8    H81   SING N N 17 
0E6 N     CA    SING N N 18 
0E6 N     H     SING N N 19 
0E6 CA    C     SING N N 20 
0E6 CA    CB    SING N N 21 
0E6 CA    HA    SING N N 22 
0E6 C     O     DOUB N N 23 
0E6 CB    CG    SING N N 24 
0E6 CB    HB2   SING N N 25 
0E6 CB    HB3   SING N N 26 
0E6 CG    CD    SING N N 27 
0E6 CG    HG2   SING N N 28 
0E6 CG    HG3   SING N N 29 
0E6 CD    NE    SING N N 30 
0E6 CD    HD2   SING N N 31 
0E6 CD    HD3   SING N N 32 
0E6 NE    CZ    SING N N 33 
0E6 NE    HE    SING N N 34 
0E6 CZ    NH1   SING N N 35 
0E6 CZ    NH2   DOUB N N 36 
0E6 NH1   HH11  SING N N 37 
0E6 NH1   HH12  SING N N 38 
0E6 NH2   HH21  SING N N 39 
0E6 NH2   HH22  SING N N 40 
0E6 C11   C21   SING N N 41 
0E6 C11   H11   SING N N 42 
0E6 C11   H12   SING N N 43 
0E6 C21   O21   DOUB N N 44 
0E6 C21   C31   SING N N 45 
0E6 C31   N3    SING N N 46 
0E6 C31   C41   SING N N 47 
0E6 C31   H3    SING N N 48 
0E6 N3    HN32  SING N N 49 
0E6 C41   "O'"  SING N N 50 
0E6 C41   H411  SING N N 51 
0E6 C41   H42   SING N N 52 
0E6 "O'"  "C'"  SING N N 53 
0E6 "C'"  "C1'" SING N N 54 
0E6 "C'"  "H'1" SING N N 55 
0E6 "C'"  "H'2" SING N N 56 
0E6 "C1'" "C2'" DOUB Y N 57 
0E6 "C1'" "C6'" SING Y N 58 
0E6 "C2'" "C3'" SING Y N 59 
0E6 "C2'" "H2'" SING N N 60 
0E6 "C3'" "C4'" DOUB Y N 61 
0E6 "C3'" "H3'" SING N N 62 
0E6 "C4'" "C5'" SING Y N 63 
0E6 "C4'" "H4'" SING N N 64 
0E6 "C5'" "C6'" DOUB Y N 65 
0E6 "C5'" "H5'" SING N N 66 
0E6 "C6'" "H6'" SING N N 67 
0E6 C1    N     SING N N 68 
0E6 C     N3    SING N N 69 
0E6 CL    C11   SING N N 70 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
0E6 SMILES           ACDLabs              12.01 "O=C(OCc1ccccc1)NC(C(=O)NC(C(=O)CCl)COCc2ccccc2)CCCNC(=[NH2+])\\N"                                                                                                                                              
0E6 InChI            InChI                1.03  "InChI=1S/C25H32ClN5O5/c26-14-22(32)21(17-35-15-18-8-3-1-4-9-18)30-23(33)20(12-7-13-29-24(27)28)31-25(34)36-16-19-10-5-2-6-11-19/h1-6,8-11,20-21H,7,12-17H2,(H,30,33)(H,31,34)(H4,27,28,29)/p+1/t20-,21-/m0/s1" 
0E6 InChIKey         InChI                1.03  ZCPUCLRLZWEDRC-SFTDATJTSA-O                                                                                                                                                                                     
0E6 SMILES_CANONICAL CACTVS               3.385 "NC(=[NH2+])NCCC[C@H](NC(=O)OCc1ccccc1)C(=O)N[C@@H](COCc2ccccc2)C(=O)CCl"                                                                                                                                       
0E6 SMILES           CACTVS               3.385 "NC(=[NH2+])NCCC[CH](NC(=O)OCc1ccccc1)C(=O)N[CH](COCc2ccccc2)C(=O)CCl"                                                                                                                                          
0E6 SMILES_CANONICAL "OpenEye OEToolkits" 1.7.5 "c1ccc(cc1)COC[C@@H](C(=O)CCl)NC(=O)[C@H](CCCNC(=[NH2+])N)NC(=O)OCc2ccccc2"                                                                                                                                     
0E6 SMILES           "OpenEye OEToolkits" 1.7.5 "c1ccc(cc1)COCC(C(=O)CCl)NC(=O)C(CCCNC(=[NH2+])N)NC(=O)OCc2ccccc2"                                                                                                                                              
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
0E6 "SYSTEMATIC NAME" ACDLabs              12.01 "amino{[(4S)-4-{[(benzyloxy)carbonyl]amino}-5-{[(2S)-1-(benzyloxy)-4-chloro-3-oxobutan-2-yl]amino}-5-oxopentyl]amino}methaniminium"             
0E6 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.0 "[azanyl-[[(4S)-5-[[(2S)-4-chloro-3-oxo-1-phenylmethoxy-butan-2-yl]amino]-5-oxo-4-(phenylmethoxycarbonylamino)pentyl]amino]methylidene]azanium" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
0E6 "Create component"     2008-11-07 RCSB 
0E6 "Other modification"   2011-01-14 RCSB 
0E6 "Modify aromatic_flag" 2011-06-04 RCSB 
0E6 "Modify descriptor"    2011-06-04 RCSB 
0E6 "Modify descriptor"    2012-01-05 RCSB 
0E6 "Modify synonyms"      2020-06-05 PDBE 
0E6 "Modify PCM"           2024-09-27 PDBE 
# 
_pdbx_chem_comp_synonyms.ordinal      1 
_pdbx_chem_comp_synonyms.comp_id      0E6 
_pdbx_chem_comp_synonyms.name         "benzyloxycarbonyl-Arg-Ser(O-Bzl) chloromethylketone" 
_pdbx_chem_comp_synonyms.provenance   ? 
_pdbx_chem_comp_synonyms.type         ? 
# 
_pdbx_chem_comp_pcm.pcm_id                             1 
_pdbx_chem_comp_pcm.comp_id                            0E6 
_pdbx_chem_comp_pcm.modified_residue_id                CYS 
_pdbx_chem_comp_pcm.type                               None 
_pdbx_chem_comp_pcm.category                           "Covalent chemical modification" 
_pdbx_chem_comp_pcm.position                           "Amino-acid side chain" 
_pdbx_chem_comp_pcm.polypeptide_position               "Any position" 
_pdbx_chem_comp_pcm.comp_id_linking_atom               C11 
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom   SG 
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession     ? 
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession      ? 
# 
