data_0D6
# 
_chem_comp.id                                    0D6 
_chem_comp.name                                  "N-{(1R)-3-phenyl-1-[2-(phenylsulfonyl)ethyl]propyl}-N~2~-(piperazin-1-ylcarbonyl)-L-leucinamide" 
_chem_comp.type                                  peptide-like 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C28 H40 N4 O4 S" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         APC3328 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2008-11-07 
_chem_comp.pdbx_modified_date                    2024-09-27 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        528.707 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     0D6 
_chem_comp.pdbx_model_coordinates_details        "not provided" 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        1MEM 
_chem_comp.pdbx_subcomponent_list                "BZP LEU NFP" 
_chem_comp.pdbx_processing_site                  RCSB 
_chem_comp.pdbx_pcm                              Y 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
0D6 N1    N1  N 0 1 N N N N N N 23.684 1.627  5.333  4.755  2.662  -0.209 N1   BZP 1  
0D6 C1    C1  C 0 1 N N N N N N 22.467 2.154  5.176  3.616  2.298  0.414  C1   BZP 2  
0D6 O1    O1  O 0 1 N N N N N N 22.315 3.094  4.395  3.494  2.476  1.610  O1   BZP 3  
0D6 C2    C2  C 0 1 N N N N N N 24.889 2.186  4.636  5.816  3.376  0.515  C2   BZP 4  
0D6 C3    C3  C 0 1 N N N N N N 26.104 2.190  5.488  7.143  2.646  0.280  C3   BZP 5  
0D6 N4    N2  N 0 1 N N N N N N 26.345 0.849  6.018  7.368  2.498  -1.164 N4   BZP 6  
0D6 C5    C4  C 0 1 N N N N N N 25.237 0.357  6.833  6.328  1.664  -1.782 C5   BZP 7  
0D6 C6    C5  C 0 1 N N N N N N 23.942 0.354  6.060  4.971  2.349  -1.630 C6   BZP 8  
0D6 N     N3  N 0 1 N N N N N N 21.408 1.597  5.763  2.613  1.737  -0.290 N    LEU 9  
0D6 CA    C6  C 0 1 N N S N N N 20.085 2.182  5.590  1.336  1.441  0.364  CA   LEU 10 
0D6 C     C7  C 0 1 N N N N N N 20.104 3.574  6.163  0.690  0.256  -0.307 C    LEU 11 
0D6 O     O3  O 0 1 N N N N N N 20.603 3.777  7.267  1.053  -0.087 -1.412 O    LEU 12 
0D6 CB    C8  C 0 1 N N N N N N 19.020 1.366  6.308  0.412  2.656  0.253  CB   LEU 13 
0D6 CG    C9  C 0 1 N N N N N N 18.340 0.174  5.637  -0.870 2.396  1.046  CG   LEU 14 
0D6 CD1   C10 C 0 1 N N N N N N 18.880 -0.171 4.260  -0.534 2.279  2.534  CD1  LEU 15 
0D6 CD2   C11 C 0 1 N N N N N N 18.417 -0.985 6.585  -1.845 3.556  0.833  CD2  LEU 16 
0D6 C11   C12 C 0 1 N N N N N N 17.437 6.567  4.612  -3.168 -0.717 -0.254 C1   NFP 17 
0D6 C21   C13 C 0 1 N N N N N N 18.165 6.409  5.974  -2.269 -1.857 0.229  C2   NFP 18 
0D6 C31   C14 C 0 1 N N S N N N 19.620 5.922  5.809  -0.845 -1.636 -0.284 C3   NFP 19 
0D6 N2    N4  N 0 1 N N N N N N 19.676 4.544  5.368  -0.291 -0.422 0.321  N    NFP 20 
0D6 C4    C15 C 0 1 N N N N N N 20.460 6.805  4.883  0.025  -2.836 0.093  C4   NFP 21 
0D6 C51   C16 C 0 1 N N N N N N 21.948 6.483  4.961  1.415  -2.674 -0.527 C5   NFP 22 
0D6 "C1'" C17 C 0 1 Y N N N N N 22.765 7.285  3.979  2.272  -3.856 -0.156 C6   NFP 23 
0D6 "C2'" C18 C 0 1 Y N N N N N 23.248 6.684  2.801  2.295  -4.975 -0.967 C7   NFP 24 
0D6 "C3'" C19 C 0 1 Y N N N N N 23.922 7.464  1.847  3.081  -6.060 -0.627 C8   NFP 25 
0D6 "C4'" C20 C 0 1 Y N N N N N 24.117 8.837  2.071  3.845  -6.026 0.525  C9   NFP 26 
0D6 "C5'" C21 C 0 1 Y N N N N N 23.650 9.436  3.237  3.822  -4.907 1.336  C10  NFP 27 
0D6 "C6'" C22 C 0 1 Y N N N N N 22.981 8.666  4.189  3.039  -3.820 0.993  C11  NFP 28 
0D6 C12   C23 C 0 1 Y N N N N N 15.866 8.793  -0.030 -7.198 2.545  -1.254 C12  NFP 29 
0D6 C22   C24 C 0 1 Y N N N N N 16.272 9.914  0.695  -7.100 1.383  -1.997 C13  NFP 30 
0D6 C32   C25 C 0 1 Y N N N N N 16.790 9.775  1.994  -6.385 0.307  -1.505 C14  NFP 31 
0D6 C41   C26 C 0 1 Y N N N N N 16.931 8.502  2.593  -5.768 0.392  -0.271 C15  NFP 32 
0D6 S1    S1  S 0 1 N N N N N N 17.093 8.339  4.349  -4.857 -0.979 0.355  S1   NFP 33 
0D6 O11   O5  O 0 1 N N N N N N 15.807 8.974  4.966  -5.445 -2.109 -0.276 O1   NFP 34 
0D6 O2    O6  O 0 1 N N N N N N 18.323 9.217  4.677  -4.909 -0.820 1.766  O2   NFP 35 
0D6 C52   C27 C 0 1 Y N N N N N 16.510 7.379  1.819  -5.866 1.554  0.472  C16  NFP 36 
0D6 C61   C28 C 0 1 Y N N N N N 15.983 7.530  0.527  -6.581 2.631  -0.020 C17  NFP 37 
0D6 H21   H2  H 0 1 N N N N N N 25.092 1.569  3.749  5.890  4.398  0.142  H21  BZP 38 
0D6 H22   H3  H 0 1 N N N N N N 24.669 3.223  4.344  5.588  3.388  1.581  H22  BZP 39 
0D6 H31   H4  H 0 1 N N N N N N 26.969 2.505  4.886  7.958  3.222  0.718  H31  BZP 40 
0D6 H32   H5  H 0 1 N N N N N N 25.960 2.891  6.323  7.103  1.661  0.745  H32  BZP 41 
0D6 HN4   H6  H 0 1 N N N N N N 26.473 0.224  5.248  7.425  3.398  -1.615 HN4  BZP 42 
0D6 H51   H7  H 0 1 N N N N N N 25.461 -0.671 7.153  6.552  1.529  -2.840 H51  BZP 43 
0D6 H52   H8  H 0 1 N N N N N N 25.125 1.011  7.711  6.299  0.693  -1.289 H52  BZP 44 
0D6 H61   H9  H 0 1 N N N N N N 23.118 0.192  6.771  4.184  1.682  -1.982 H61  BZP 45 
0D6 H62   H10 H 0 1 N N N N N N 23.985 -0.460 5.322  4.962  3.270  -2.213 H62  BZP 46 
0D6 H     H11 H 0 1 N N N N N N 21.522 0.776  6.323  2.736  1.528  -1.229 H    LEU 47 
0D6 HA    H13 H 0 1 N N N N N N 19.841 2.197  4.517  1.510  1.212  1.416  HA   LEU 48 
0D6 HB2   H14 H 0 1 N N N N N N 19.511 0.961  7.205  0.917  3.534  0.656  HB2  LEU 49 
0D6 HB3   H15 H 0 1 N N N N N N 18.212 2.074  6.543  0.163  2.828  -0.794 HB3  LEU 50 
0D6 HG    H16 H 0 1 N N N N N N 17.293 0.444  5.434  -1.328 1.468  0.703  HG   LEU 51 
0D6 HD11  H17 H 0 0 N N N N N N 18.333 -1.037 3.858  -1.434 2.014  3.090  HD11 LEU 52 
0D6 HD12  H18 H 0 0 N N N N N N 18.748 0.690  3.588  0.222  1.507  2.677  HD12 LEU 53 
0D6 HD13  H19 H 0 0 N N N N N N 19.950 -0.416 4.337  -0.152 3.233  2.897  HD13 LEU 54 
0D6 HD21  H20 H 0 0 N N N N N N 17.935 -1.863 6.131  -2.084 3.639  -0.227 HD21 LEU 55 
0D6 HD22  H21 H 0 0 N N N N N N 19.471 -1.215 6.798  -2.759 3.371  1.398  HD22 LEU 56 
0D6 HD23  H22 H 0 0 N N N N N N 17.902 -0.727 7.522  -1.387 4.483  1.176  HD23 LEU 57 
0D6 H11   H24 H 0 1 N N N N N N 18.075 6.186  3.801  -2.788 0.231  0.126  H1   NFP 58 
0D6 H12   H25 H 0 1 N N N N N N 16.494 6.001  4.624  -3.174 -0.696 -1.343 H2   NFP 59 
0D6 H211  H27 H 0 0 N N N N N N 18.179 7.387  6.478  -2.263 -1.878 1.319  H3   NFP 60 
0D6 H221  H28 H 0 0 N N N N N N 17.617 5.673  6.580  -2.649 -2.806 -0.150 H4   NFP 61 
0D6 H3    H29 H 0 1 N N N N N N 20.064 5.996  6.813  -0.863 -1.526 -1.368 H5   NFP 62 
0D6 HN2   H31 H 0 1 N N N N N N 19.384 4.318  4.439  -0.630 -0.106 1.173  H6   NFP 63 
0D6 H41   H32 H 0 1 N N N N N N 20.123 6.645  3.848  0.115  -2.894 1.177  H7   NFP 64 
0D6 H42   H33 H 0 1 N N N N N N 20.315 7.855  5.177  -0.435 -3.751 -0.282 H8   NFP 65 
0D6 H511  H34 H 0 0 N N N N N N 22.301 6.712  5.977  1.324  -2.617 -1.612 H9   NFP 66 
0D6 H521  H35 H 0 0 N N N N N N 22.085 5.415  4.738  1.875  -1.760 -0.152 H10  NFP 67 
0D6 "H2'" H36 H 0 1 N N N N N N 23.101 5.628  2.632  1.698  -5.002 -1.867 H11  NFP 68 
0D6 "H3'" H37 H 0 1 N N N N N N 24.291 7.008  0.940  3.098  -6.934 -1.260 H12  NFP 69 
0D6 "H4'" H38 H 0 1 N N N N N N 24.633 9.432  1.333  4.458  -6.874 0.791  H13  NFP 70 
0D6 "H5'" H39 H 0 1 N N N N N N 23.805 10.492 3.404  4.419  -4.880 2.236  H14  NFP 71 
0D6 "H6'" H40 H 0 1 N N N N N N 22.624 9.130  5.096  3.025  -2.944 1.625  H15  NFP 72 
0D6 H1    H41 H 0 1 N N N N N N 15.461 8.910  -1.024 -7.752 3.388  -1.640 H16  NFP 73 
0D6 H2    H42 H 0 1 N N N N N N 16.187 10.896 0.254  -7.582 1.316  -2.960 H17  NFP 74 
0D6 H33   H43 H 0 1 N N N N N N 17.086 10.656 2.544  -6.309 -0.601 -2.085 H18  NFP 75 
0D6 H5    H44 H 0 1 N N N N N N 16.599 6.388  2.238  -5.384 1.621  1.436  H19  NFP 76 
0D6 H6    H45 H 0 1 N N N N N N 15.669 6.662  -0.033 -6.657 3.538  0.560  H20  NFP 77 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
0D6 N1    C1    SING N N 1  
0D6 N1    C2    SING N N 2  
0D6 N1    C6    SING N N 3  
0D6 C1    O1    DOUB N N 4  
0D6 C2    C3    SING N N 5  
0D6 C2    H21   SING N N 6  
0D6 C2    H22   SING N N 7  
0D6 C3    N4    SING N N 8  
0D6 C3    H31   SING N N 9  
0D6 C3    H32   SING N N 10 
0D6 N4    C5    SING N N 11 
0D6 N4    HN4   SING N N 12 
0D6 C5    C6    SING N N 13 
0D6 C5    H51   SING N N 14 
0D6 C5    H52   SING N N 15 
0D6 C6    H61   SING N N 16 
0D6 C6    H62   SING N N 17 
0D6 N     CA    SING N N 18 
0D6 N     H     SING N N 19 
0D6 CA    C     SING N N 20 
0D6 CA    CB    SING N N 21 
0D6 CA    HA    SING N N 22 
0D6 C     O     DOUB N N 23 
0D6 CB    CG    SING N N 24 
0D6 CB    HB2   SING N N 25 
0D6 CB    HB3   SING N N 26 
0D6 CG    CD1   SING N N 27 
0D6 CG    CD2   SING N N 28 
0D6 CG    HG    SING N N 29 
0D6 CD1   HD11  SING N N 30 
0D6 CD1   HD12  SING N N 31 
0D6 CD1   HD13  SING N N 32 
0D6 CD2   HD21  SING N N 33 
0D6 CD2   HD22  SING N N 34 
0D6 CD2   HD23  SING N N 35 
0D6 C11   C21   SING N N 36 
0D6 C11   H11   SING N N 37 
0D6 C11   H12   SING N N 38 
0D6 C21   C31   SING N N 39 
0D6 C21   H211  SING N N 40 
0D6 C21   H221  SING N N 41 
0D6 C31   N2    SING N N 42 
0D6 C31   C4    SING N N 43 
0D6 C31   H3    SING N N 44 
0D6 N2    HN2   SING N N 45 
0D6 C4    C51   SING N N 46 
0D6 C4    H41   SING N N 47 
0D6 C4    H42   SING N N 48 
0D6 C51   "C1'" SING N N 49 
0D6 C51   H511  SING N N 50 
0D6 C51   H521  SING N N 51 
0D6 "C1'" "C2'" DOUB Y N 52 
0D6 "C1'" "C6'" SING Y N 53 
0D6 "C2'" "C3'" SING Y N 54 
0D6 "C2'" "H2'" SING N N 55 
0D6 "C3'" "C4'" DOUB Y N 56 
0D6 "C3'" "H3'" SING N N 57 
0D6 "C4'" "C5'" SING Y N 58 
0D6 "C4'" "H4'" SING N N 59 
0D6 "C5'" "C6'" DOUB Y N 60 
0D6 "C5'" "H5'" SING N N 61 
0D6 "C6'" "H6'" SING N N 62 
0D6 C12   C22   DOUB Y N 63 
0D6 C12   C61   SING Y N 64 
0D6 C12   H1    SING N N 65 
0D6 C22   C32   SING Y N 66 
0D6 C22   H2    SING N N 67 
0D6 C32   C41   DOUB Y N 68 
0D6 C32   H33   SING N N 69 
0D6 C41   S1    SING N N 70 
0D6 C41   C52   SING Y N 71 
0D6 S1    O11   DOUB N N 72 
0D6 S1    O2    DOUB N N 73 
0D6 C52   C61   DOUB Y N 74 
0D6 C52   H5    SING N N 75 
0D6 C61   H6    SING N N 76 
0D6 C1    N     SING N N 77 
0D6 C     N2    SING N N 78 
0D6 C11   S1    SING N N 79 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
0D6 SMILES           ACDLabs              12.01 "O=C(NC(C(=O)NC(CCc1ccccc1)CCS(=O)(=O)c2ccccc2)CC(C)C)N3CCNCC3"                                                                                                                                           
0D6 SMILES_CANONICAL CACTVS               3.370 "CC(C)C[C@H](NC(=O)N1CCNCC1)C(=O)N[C@@H](CCc2ccccc2)CC[S](=O)(=O)c3ccccc3"                                                                                                                                
0D6 SMILES           CACTVS               3.370 "CC(C)C[CH](NC(=O)N1CCNCC1)C(=O)N[CH](CCc2ccccc2)CC[S](=O)(=O)c3ccccc3"                                                                                                                                   
0D6 SMILES_CANONICAL "OpenEye OEToolkits" 1.7.0 "CC(C)C[C@@H](C(=O)N[C@@H](CCc1ccccc1)CCS(=O)(=O)c2ccccc2)NC(=O)N3CCNCC3"                                                                                                                                 
0D6 SMILES           "OpenEye OEToolkits" 1.7.0 "CC(C)CC(C(=O)NC(CCc1ccccc1)CCS(=O)(=O)c2ccccc2)NC(=O)N3CCNCC3"                                                                                                                                           
0D6 InChI            InChI                1.03  "InChI=1S/C28H40N4O4S/c1-22(2)21-26(31-28(34)32-18-16-29-17-19-32)27(33)30-24(14-13-23-9-5-3-6-10-23)15-20-37(35,36)25-11-7-4-8-12-25/h3-12,22,24,26,29H,13-21H2,1-2H3,(H,30,33)(H,31,34)/t24-,26-/m0/s1" 
0D6 InChIKey         InChI                1.03  GZQYXFWTRHRNKT-AHWVRZQESA-N                                                                                                                                                                               
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
0D6 "SYSTEMATIC NAME" ACDLabs              12.01 "N-[(3S)-1-phenyl-5-(phenylsulfonyl)pentan-3-yl]-N~2~-(piperazin-1-ylcarbonyl)-L-leucinamide"                       
0D6 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.0 "N-[(2S)-4-methyl-1-oxo-1-[[(3S)-1-phenyl-5-(phenylsulfonyl)pentan-3-yl]amino]pentan-2-yl]piperazine-1-carboxamide" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
0D6 "Create component"     2008-11-07 RCSB 
0D6 "Modify aromatic_flag" 2011-06-04 RCSB 
0D6 "Modify descriptor"    2011-06-04 RCSB 
0D6 "Modify synonyms"      2020-06-05 PDBE 
0D6 "Modify PCM"           2024-09-27 PDBE 
# 
_pdbx_chem_comp_synonyms.ordinal      1 
_pdbx_chem_comp_synonyms.comp_id      0D6 
_pdbx_chem_comp_synonyms.name         APC3328 
_pdbx_chem_comp_synonyms.provenance   ? 
_pdbx_chem_comp_synonyms.type         ? 
# 
_pdbx_chem_comp_pcm.pcm_id                             1 
_pdbx_chem_comp_pcm.comp_id                            0D6 
_pdbx_chem_comp_pcm.modified_residue_id                CYS 
_pdbx_chem_comp_pcm.type                               None 
_pdbx_chem_comp_pcm.category                           "Covalent chemical modification" 
_pdbx_chem_comp_pcm.position                           "Amino-acid side chain" 
_pdbx_chem_comp_pcm.polypeptide_position               "Any position" 
_pdbx_chem_comp_pcm.comp_id_linking_atom               C21 
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom   SG 
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession     ? 
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession      ? 
# 
