data_ZG5
# 
_chem_comp.id                                    ZG5 
_chem_comp.name                                  "11-(4-beta-D-glucopyranuronosylpiperazin-1-yl)dibenzo[b,f][1,4]thiazepine" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C23 H25 N3 O6 S" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2023-03-09 
_chem_comp.pdbx_modified_date                    2024-03-15 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        471.526 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     ZG5 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        8GER 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
ZG5 C02  C1  C 0 1 N N N N N N 24.263 -80.553 -13.270 -4.393 -1.663 2.026  C02  ZG5 1  
ZG5 C04  C2  C 0 1 N N S N N N 23.403 -80.146 -11.919 -4.468 -0.453 1.130  C04  ZG5 2  
ZG5 C06  C3  C 0 1 N N R N N N 21.098 -80.991 -11.268 -3.118 1.000  -0.217 C06  ZG5 3  
ZG5 C08  C4  C 0 1 N N N N N N 20.112 -83.504 -11.826 -0.903 1.704  0.463  C08  ZG5 4  
ZG5 C09  C5  C 0 1 N N N N N N 19.559 -84.314 -13.107 0.477  2.107  -0.067 C09  ZG5 5  
ZG5 C11  C6  C 0 1 N N N N N N 20.344 -84.388 -15.250 2.302  0.505  -0.559 C11  ZG5 6  
ZG5 C13  C7  C 0 1 Y N N N N N 22.520 -85.680 -14.413 3.786  -1.263 -1.177 C13  ZG5 7  
ZG5 C14  C8  C 0 1 Y N N N N N 23.255 -85.713 -13.145 4.311  -1.690 -2.402 C14  ZG5 8  
ZG5 C15  C9  C 0 1 Y N N N N N 24.300 -86.635 -12.899 5.484  -2.417 -2.443 C15  ZG5 9  
ZG5 C16  C10 C 0 1 Y N N N N N 24.644 -87.533 -13.910 6.151  -2.731 -1.274 C16  ZG5 10 
ZG5 C17  C11 C 0 1 Y N N N N N 23.945 -87.484 -15.113 5.644  -2.315 -0.054 C17  ZG5 11 
ZG5 C18  C12 C 0 1 Y N N N N N 22.898 -86.560 -15.349 4.470  -1.584 -0.001 C18  ZG5 12 
ZG5 C20  C13 C 0 1 Y N N N N N 20.599 -85.552 -17.370 3.845  0.700  1.400  C20  ZG5 13 
ZG5 C21  C14 C 0 1 Y N N N N N 20.041 -85.661 -18.676 4.587  1.476  2.276  C21  ZG5 14 
ZG5 C22  C15 C 0 1 Y N N N N N 18.913 -84.914 -19.050 4.583  2.854  2.154  C22  ZG5 15 
ZG5 C23  C16 C 0 1 Y N N N N N 18.311 -84.051 -18.168 3.837  3.460  1.158  C23  ZG5 16 
ZG5 C24  C17 C 0 1 Y N N N N N 18.900 -83.987 -16.911 3.078  2.697  0.287  C24  ZG5 17 
ZG5 C25  C18 C 0 1 Y N N N N N 20.005 -84.708 -16.515 3.082  1.301  0.391  C25  ZG5 18 
ZG5 C26  C19 C 0 1 N N N N N N 19.270 -82.197 -13.948 0.204  0.359  -1.869 C26  ZG5 19 
ZG5 C27  C20 C 0 1 N N N N N N 20.640 -81.954 -13.633 -1.166 0.026  -1.268 C27  ZG5 20 
ZG5 C28  C21 C 0 1 N N R N N N 21.691 -81.307 -9.852  -4.007 0.770  -1.442 C28  ZG5 21 
ZG5 C30  C22 C 0 1 N N S N N N 23.171 -80.865 -9.433  -5.436 0.469  -0.977 C30  ZG5 22 
ZG5 C32  C23 C 0 1 N N S N N N 24.069 -81.028 -10.751 -5.411 -0.742 -0.040 C32  ZG5 23 
ZG5 N07  N1  N 0 1 N N N N N N 20.975 -82.250 -12.213 -1.735 1.233  -0.653 N07  ZG5 24 
ZG5 N10  N2  N 0 1 N N N N N N 19.256 -83.705 -14.276 1.035  0.975  -0.823 N10  ZG5 25 
ZG5 N12  N3  N 0 1 N N N N N N 21.540 -84.681 -14.635 2.630  -0.554 -1.177 N12  ZG5 26 
ZG5 O01  O1  O 0 1 N N N N N N 23.717 -81.298 -14.059 -3.351 -2.264 2.144  O01  ZG5 27 
ZG5 O03  O2  O 0 1 N N N N N N 25.502 -80.181 -13.425 -5.482 -2.070 2.697  O03  ZG5 28 
ZG5 O05  O3  O 0 1 N N N N N N 21.878 -79.980 -11.933 -3.165 -0.151 0.627  O05  ZG5 29 
ZG5 O29  O4  O 0 1 N N N N N N 20.842 -80.584 -8.903  -4.008 1.942  -2.259 O29  ZG5 30 
ZG5 O31  O5  O 0 1 N N N N N N 23.753 -81.665 -8.418  -6.256 0.180  -2.111 O31  ZG5 31 
ZG5 O33  O6  O 0 1 N N N N N N 25.366 -80.708 -10.332 -6.728 -0.988 0.457  O33  ZG5 32 
ZG5 S19  S1  S 0 1 N N N N N N 22.081 -86.598 -16.983 3.845  -1.061 1.562  S19  ZG5 33 
ZG5 H041 H1  H 0 0 N N N N N N 23.770 -79.132 -11.700 -4.844 0.397  1.699  H041 ZG5 34 
ZG5 H061 H2  H 0 0 N N N N N N 20.080 -80.605 -11.113 -3.477 1.870  0.333  H061 ZG5 35 
ZG5 H081 H3  H 0 0 N N N N N N 19.253 -83.166 -11.228 -0.793 0.906  1.196  H081 ZG5 36 
ZG5 H082 H4  H 0 0 N N N N N N 20.733 -84.184 -11.224 -1.378 2.566  0.931  H082 ZG5 37 
ZG5 H091 H5  H 0 0 N N N N N N 18.638 -84.816 -12.777 0.380  2.973  -0.722 H091 ZG5 38 
ZG5 H092 H6  H 0 0 N N N N N N 20.323 -85.069 -13.345 1.133  2.352  0.768  H092 ZG5 39 
ZG5 H141 H8  H 0 0 N N N N N N 22.989 -85.008 -12.371 3.796  -1.449 -3.320 H141 ZG5 40 
ZG5 H151 H9  H 0 0 N N N N N N 24.819 -86.643 -11.952 5.881  -2.743 -3.393 H151 ZG5 41 
ZG5 H161 H10 H 0 0 N N N N N N 25.437 -88.252 -13.762 7.068  -3.302 -1.312 H161 ZG5 42 
ZG5 H171 H11 H 0 0 N N N N N N 24.212 -88.178 -15.897 6.167  -2.561 0.858  H171 ZG5 43 
ZG5 H211 H12 H 0 0 N N N N N N 20.494 -86.331 -19.392 5.169  1.005  3.054  H211 ZG5 44 
ZG5 H221 H13 H 0 0 N N N N N N 18.512 -85.020 -20.047 5.163  3.457  2.837  H221 ZG5 45 
ZG5 H231 H14 H 0 0 N N N N N N 17.443 -83.465 -18.432 3.835  4.536  1.070  H231 ZG5 46 
ZG5 H241 H15 H 0 0 N N N N N N 18.456 -83.319 -16.187 2.498  3.179  -0.486 H241 ZG5 47 
ZG5 H261 H16 H 0 0 N N N N N N 18.951 -81.600 -14.815 0.680  -0.554 -2.224 H261 ZG5 48 
ZG5 H262 H17 H 0 0 N N N N N N 18.620 -81.972 -13.089 0.081  1.055  -2.699 H262 ZG5 49 
ZG5 H271 H18 H 0 0 N N N N N N 21.265 -82.587 -14.279 -1.832 -0.329 -2.055 H271 ZG5 50 
ZG5 H272 H19 H 0 0 N N N N N N 20.862 -80.895 -13.832 -1.053 -0.749 -0.510 H272 ZG5 51 
ZG5 H281 H20 H 0 0 N N N N N N 21.601 -82.389 -9.676  -3.625 -0.075 -2.016 H281 ZG5 52 
ZG5 H301 H21 H 0 0 N N N N N N 23.155 -79.803 -9.145  -5.836 1.334  -0.448 H301 ZG5 53 
ZG5 H321 H22 H 0 0 N N N N N N 24.018 -82.082 -11.061 -5.058 -1.618 -0.585 H321 ZG5 54 
ZG5 H5   H26 H 0 1 N N N N N N 25.856 -80.578 -14.212 -5.385 -2.851 3.259  H5   ZG5 55 
ZG5 H291 H27 H 0 0 N N N N N N 21.153 -80.737 -8.019  -4.552 1.867  -3.055 H291 ZG5 56 
ZG5 H311 H28 H 0 0 N N N N N N 23.241 -81.589 -7.621  -7.176 -0.020 -1.889 H311 ZG5 57 
ZG5 H331 H29 H 0 0 N N N N N N 25.633 -81.305 -9.643  -6.786 -1.740 1.062  H331 ZG5 58 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
ZG5 C22 C21  DOUB Y N 1  
ZG5 C22 C23  SING Y N 2  
ZG5 C21 C20  SING Y N 3  
ZG5 C23 C24  DOUB Y N 4  
ZG5 C20 S19  SING N N 5  
ZG5 C20 C25  DOUB Y N 6  
ZG5 S19 C18  SING N N 7  
ZG5 C24 C25  SING Y N 8  
ZG5 C25 C11  SING N N 9  
ZG5 C18 C17  DOUB Y N 10 
ZG5 C18 C13  SING Y N 11 
ZG5 C11 N12  DOUB N N 12 
ZG5 C11 N10  SING N N 13 
ZG5 C17 C16  SING Y N 14 
ZG5 N12 C13  SING N N 15 
ZG5 C13 C14  DOUB Y N 16 
ZG5 N10 C26  SING N N 17 
ZG5 N10 C09  SING N N 18 
ZG5 O01 C02  DOUB N N 19 
ZG5 C26 C27  SING N N 20 
ZG5 C16 C15  DOUB Y N 21 
ZG5 C27 N07  SING N N 22 
ZG5 O03 C02  SING N N 23 
ZG5 C02 C04  SING N N 24 
ZG5 C14 C15  SING Y N 25 
ZG5 C09 C08  SING N N 26 
ZG5 N07 C08  SING N N 27 
ZG5 N07 C06  SING N N 28 
ZG5 O05 C04  SING N N 29 
ZG5 O05 C06  SING N N 30 
ZG5 C04 C32  SING N N 31 
ZG5 C06 C28  SING N N 32 
ZG5 C32 O33  SING N N 33 
ZG5 C32 C30  SING N N 34 
ZG5 C28 C30  SING N N 35 
ZG5 C28 O29  SING N N 36 
ZG5 C30 O31  SING N N 37 
ZG5 C04 H041 SING N N 38 
ZG5 C06 H061 SING N N 39 
ZG5 C08 H081 SING N N 40 
ZG5 C08 H082 SING N N 41 
ZG5 C09 H091 SING N N 42 
ZG5 C09 H092 SING N N 43 
ZG5 C14 H141 SING N N 44 
ZG5 C15 H151 SING N N 45 
ZG5 C16 H161 SING N N 46 
ZG5 C17 H171 SING N N 47 
ZG5 C21 H211 SING N N 48 
ZG5 C22 H221 SING N N 49 
ZG5 C23 H231 SING N N 50 
ZG5 C24 H241 SING N N 51 
ZG5 C26 H261 SING N N 52 
ZG5 C26 H262 SING N N 53 
ZG5 C27 H271 SING N N 54 
ZG5 C27 H272 SING N N 55 
ZG5 C28 H281 SING N N 56 
ZG5 C30 H301 SING N N 57 
ZG5 C32 H321 SING N N 58 
ZG5 O03 H5   SING N N 59 
ZG5 O29 H291 SING N N 60 
ZG5 O31 H311 SING N N 61 
ZG5 O33 H331 SING N N 62 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
ZG5 SMILES           ACDLabs              12.01 "O=C(O)C1OC(C(O)C(O)C1O)N1CCN(CC1)C1=Nc2ccccc2Sc2ccccc21"                                                                                                                                         
ZG5 InChI            InChI                1.06  "InChI=1S/C23H25N3O6S/c27-17-18(28)20(23(30)31)32-22(19(17)29)26-11-9-25(10-12-26)21-13-5-1-3-7-15(13)33-16-8-4-2-6-14(16)24-21/h1-8,17-20,22,27-29H,9-12H2,(H,30,31)/t17-,18-,19+,20-,22+/m0/s1" 
ZG5 InChIKey         InChI                1.06  UKCFGNFADWVWOZ-SXFAUFNYSA-N                                                                                                                                                                       
ZG5 SMILES_CANONICAL CACTVS               3.385 "O[C@@H]1[C@@H](O)[C@@H](O[C@@H]([C@H]1O)C(O)=O)N2CCN(CC2)C3=Nc4ccccc4Sc5ccccc35"                                                                                                                 
ZG5 SMILES           CACTVS               3.385 "O[CH]1[CH](O)[CH](O[CH]([CH]1O)C(O)=O)N2CCN(CC2)C3=Nc4ccccc4Sc5ccccc35"                                                                                                                          
ZG5 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1ccc2c(c1)C(=Nc3ccccc3S2)N4CCN(CC4)[C@H]5[C@@H]([C@H]([C@@H]([C@H](O5)C(=O)O)O)O)O"                                                                                                             
ZG5 SMILES           "OpenEye OEToolkits" 2.0.7 "c1ccc2c(c1)C(=Nc3ccccc3S2)N4CCN(CC4)C5C(C(C(C(O5)C(=O)O)O)O)O"                                                                                                                                   
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
ZG5 "SYSTEMATIC NAME" ACDLabs              12.01 "11-(4-beta-D-glucopyranuronosylpiperazin-1-yl)dibenzo[b,f][1,4]thiazepine"                                                        
ZG5 "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "(2~{S},3~{S},4~{S},5~{R},6~{R})-6-(4-benzo[b][1,4]benzothiazepin-6-ylpiperazin-1-yl)-3,4,5-tris(oxidanyl)oxane-2-carboxylic acid" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
ZG5 "Create component" 2023-03-09 RCSB 
ZG5 "Initial release"  2024-03-20 RCSB 
# 
