data_YT5
#

_chem_comp.id                                   YT5
_chem_comp.name                                 "Moiramide B"
_chem_comp.type                                 non-polymer
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C25 H31 N3 O5"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        
;(2~{E},4~{E})-~{N}-[(1~{S})-3-[[(2~{S})-3-methyl-1-[(3~{R},4~{S})-4-methyl-2,5-bis(oxidanylidene)pyrrolidin-3-yl]-1-oxi
danylidene-butan-2-yl]amino]-3-oxidanylidene-1-phenyl-propyl]hexa-2,4-dienamide
;

_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2016-06-09
_chem_comp.pdbx_modified_date                   2020-06-17
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       453.531
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    YT5
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       5KDR
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
YT5  CAI  C1   C  0  1  N  N  N   8.919   -8.913  19.879   6.664   2.036  -0.854  CAI  YT5   1  
YT5  CAD  C2   C  0  1  N  N  S   8.897   -7.602  20.653   6.044   0.862  -0.094  CAD  YT5   2  
YT5  CAC  C3   C  0  1  N  N  N   7.652   -7.005  20.559   6.711  -0.439  -0.488  CAC  YT5   3  
YT5  OAG  O1   O  0  1  N  N  N   6.606   -7.587  20.861   7.884  -0.702  -0.330  OAG  YT5   4  
YT5  NAB  N1   N  0  1  N  N  N   7.740   -5.708  20.258   5.800  -1.252  -1.037  NAB  YT5   5  
YT5  CAA  C4   C  0  1  N  N  N   9.019   -5.386  20.084   4.566  -0.738  -1.103  CAA  YT5   6  
YT5  OAF  O2   O  0  1  N  N  N   9.363   -4.251  19.745   3.594  -1.301  -1.560  OAF  YT5   7  
YT5  CAE  C5   C  0  1  N  N  R   9.845   -6.539  20.076   4.574   0.659  -0.512  CAE  YT5   8  
YT5  C    C6   C  0  1  N  N  N  11.132   -6.403  20.673   3.662   0.734   0.685  C    YT5   9  
YT5  O    O3   O  0  1  N  N  N  11.770   -5.359  20.577   4.103   0.543   1.793  O    YT5  10  
YT5  CA   C7   C  0  1  N  N  S  11.788   -7.643  21.312   2.200   1.048   0.500  CA   YT5  11  
YT5  CB   C8   C  0  1  N  N  N  12.471   -7.262  22.627   1.805   2.201   1.425  CB   YT5  12  
YT5  CG2  C9   C  0  1  N  N  N  12.742   -8.547  23.418   2.689   3.415   1.133  CG2  YT5  13  
YT5  CG1  C10  C  0  1  N  N  N  11.600   -6.327  23.473   0.339   2.569   1.185  CG1  YT5  14  
YT5  N    N2   N  0  1  N  N  N  12.832   -8.222  20.443   1.401  -0.136   0.827  N    YT5  15  
YT5  CAQ  C11  C  0  1  N  N  N  12.771   -9.482  19.971   0.176  -0.293   0.287  CAQ  YT5  16  
YT5  OAS  O4   O  0  1  N  N  N  11.836  -10.251  20.178  -0.265   0.546  -0.470  OAS  YT5  17  
YT5  CAR  C12  C  0  1  N  N  N  13.972   -9.953  19.130  -0.645  -1.510   0.623  CAR  YT5  18  
YT5  CAT  C13  C  0  1  N  N  S  14.808  -10.968  19.941  -1.983  -1.444  -0.116  CAT  YT5  19  
YT5  CBB  C14  C  0  1  Y  N  N  15.738  -11.644  19.130  -2.753  -2.717   0.122  CBB  YT5  20  
YT5  CBC  C15  C  0  1  Y  N  N  15.644  -13.024  18.926  -2.759  -3.711  -0.839  CBC  YT5  21  
YT5  CBD  C16  C  0  1  Y  N  N  16.578  -13.677  18.125  -3.466  -4.879  -0.620  CBD  YT5  22  
YT5  CBE  C17  C  0  1  Y  N  N  17.618  -12.963  17.532  -4.167  -5.052   0.558  CBE  YT5  23  
YT5  CBF  C18  C  0  1  Y  N  N  17.726  -11.589  17.739  -4.160  -4.058   1.519  CBF  YT5  24  
YT5  CBG  C19  C  0  1  Y  N  N  16.791  -10.937  18.539  -3.449  -2.893   1.303  CBG  YT5  25  
YT5  NAU  N3   N  0  1  N  N  N  15.577  -10.312  21.014  -2.759  -0.304   0.379  NAU  YT5  26  
YT5  CAV  C20  C  0  1  N  N  N  15.882  -11.000  22.127  -3.694   0.267  -0.406  CAV  YT5  27  
YT5  OBH  O5   O  0  1  N  N  N  15.540  -12.170  22.322  -3.894  -0.164  -1.526  OBH  YT5  28  
YT5  CAW  C21  C  0  1  N  N  N  16.738  -10.257  23.118  -4.468   1.405   0.089  CAW  YT5  29  
YT5  CAX  C22  C  0  1  N  N  N  16.507  -10.927  24.465  -5.406   1.978  -0.699  CAX  YT5  30  
YT5  CAY  C23  C  0  1  N  N  N  17.793  -10.639  25.220  -6.181   3.117  -0.204  CAY  YT5  31  
YT5  CAZ  C24  C  0  1  N  N  N  17.554  -11.228  26.595  -7.106   3.682  -0.981  CAZ  YT5  32  
YT5  CBA  C25  C  0  1  N  N  N  18.822  -10.924  27.402  -7.904   4.854  -0.471  CBA  YT5  33  
YT5  H1   H1   H  0  1  N  N  N   8.221   -9.625  20.343   6.591   1.853  -1.926  H1   YT5  34  
YT5  H2   H2   H  0  1  N  N  N   8.616   -8.729  18.838   6.129   2.953  -0.605  H2   YT5  35  
YT5  H3   H3   H  0  1  N  N  N   9.936   -9.332  19.896   7.712   2.138  -0.573  H3   YT5  36  
YT5  H4   H4   H  0  1  N  N  N   9.169   -7.795  21.701   6.119   1.020   0.982  H4   YT5  37  
YT5  H5   H5   H  0  1  N  N  N   6.967   -5.078  20.176   6.017  -2.140  -1.360  H5   YT5  38  
YT5  H6   H6   H  0  1  N  N  N  10.004   -6.818  19.024   4.284   1.395  -1.263  H6   YT5  39  
YT5  H7   H7   H  0  1  N  N  N  11.011   -8.395  21.514   2.018   1.334  -0.535  H7   YT5  40  
YT5  H8   H8   H  0  1  N  N  N  13.427   -6.765  22.407   1.937   1.896   2.463  H8   YT5  41  
YT5  H9   H9   H  0  1  N  N  N  13.234   -8.296  24.369   2.638   3.655   0.071  H9   YT5  42  
YT5  H10  H10  H  0  1  N  N  N  11.790   -9.060  23.622   2.340   4.268   1.715  H10  YT5  43  
YT5  H11  H11  H  0  1  N  N  N  13.396   -9.208  22.831   3.720   3.187   1.406  H11  YT5  44  
YT5  H12  H12  H  0  1  N  N  N  12.127   -6.079  24.406  -0.291   1.704   1.393  H12  YT5  45  
YT5  H13  H13  H  0  1  N  N  N  11.398   -5.404  22.909   0.058   3.390   1.843  H13  YT5  46  
YT5  H14  H14  H  0  1  N  N  N  10.649   -6.827  23.711   0.206   2.874   0.147  H14  YT5  47  
YT5  H15  H15  H  0  1  N  N  N  13.617   -7.655  20.195   1.753  -0.807   1.433  H15  YT5  48  
YT5  H16  H16  H  0  1  N  N  N  14.599   -9.087  18.870  -0.106  -2.408   0.319  H16  YT5  49  
YT5  H17  H17  H  0  1  N  N  N  13.608  -10.432  18.209  -0.826  -1.541   1.698  H17  YT5  50  
YT5  H18  H18  H  0  1  N  N  N  14.115  -11.692  20.394  -1.802  -1.323  -1.185  H18  YT5  51  
YT5  H19  H19  H  0  1  N  N  N  14.846  -13.585  19.390  -2.212  -3.575  -1.760  H19  YT5  52  
YT5  H20  H20  H  0  1  N  N  N  16.496  -14.742  17.963  -3.471  -5.655  -1.371  H20  YT5  53  
YT5  H21  H21  H  0  1  N  N  N  18.340  -13.474  16.912  -4.723  -5.963   0.727  H21  YT5  54  
YT5  H22  H22  H  0  1  N  N  N  18.531  -11.033  17.281  -4.708  -4.194   2.440  H22  YT5  55  
YT5  H23  H23  H  0  1  N  N  N  16.880   -9.874  18.705  -3.444  -2.116   2.054  H23  YT5  56  
YT5  H24  H24  H  0  1  N  N  N  15.870   -9.361  20.914  -2.599   0.040   1.272  H24  YT5  57  
YT5  H25  H25  H  0  1  N  N  N  17.386   -9.417  22.914  -4.291   1.788   1.083  H25  YT5  58  
YT5  H27  H27  H  0  1  N  N  N  15.639  -11.474  24.802  -5.583   1.595  -1.693  H27  YT5  59  
YT5  H29  H29  H  0  1  N  N  N  18.675  -10.131  24.859  -6.003   3.499   0.790  H29  YT5  60  
YT5  H31  H31  H  0  1  N  N  N  16.674  -11.753  26.936  -7.284   3.299  -1.975  H31  YT5  61  
YT5  H33  H33  H  0  1  N  N  N  18.715  -11.328  28.420  -8.606   5.178  -1.240  H33  YT5  62  
YT5  H34  H34  H  0  1  N  N  N  19.689  -11.391  26.912  -8.455   4.559   0.422  H34  YT5  63  
YT5  H35  H35  H  0  1  N  N  N  18.972   -9.835  27.453  -7.229   5.674  -0.227  H35  YT5  64  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
YT5  CBE  CBF  DOUB  Y  N   1  
YT5  CBE  CBD  SING  Y  N   2  
YT5  CBF  CBG  SING  Y  N   3  
YT5  CBD  CBC  DOUB  Y  N   4  
YT5  CBG  CBB  DOUB  Y  N   5  
YT5  CBC  CBB  SING  Y  N   6  
YT5  CBB  CAT  SING  N  N   7  
YT5  CAR  CAT  SING  N  N   8  
YT5  CAR  CAQ  SING  N  N   9  
YT5  OAF  CAA  DOUB  N  N  10  
YT5  CAI  CAD  SING  N  N  11  
YT5  CAT  NAU  SING  N  N  12  
YT5  CAQ  OAS  DOUB  N  N  13  
YT5  CAQ  N    SING  N  N  14  
YT5  CAE  CAA  SING  N  N  15  
YT5  CAE  CAD  SING  N  N  16  
YT5  CAE  C    SING  N  N  17  
YT5  CAA  NAB  SING  N  N  18  
YT5  NAB  CAC  SING  N  N  19  
YT5  N    CA   SING  N  N  20  
YT5  CAC  CAD  SING  N  N  21  
YT5  CAC  OAG  DOUB  N  N  22  
YT5  O    C    DOUB  N  N  23  
YT5  C    CA   SING  N  N  24  
YT5  NAU  CAV  SING  N  N  25  
YT5  CA   CB   SING  N  N  26  
YT5  CAV  OBH  DOUB  N  N  27  
YT5  CAV  CAW  SING  N  N  28  
YT5  CB   CG2  SING  N  N  29  
YT5  CB   CG1  SING  N  N  30  
YT5  CAW  CAX  DOUB  N  E  31  
YT5  CAX  CAY  SING  N  N  32  
YT5  CAY  CAZ  DOUB  N  E  33  
YT5  CAZ  CBA  SING  N  N  34  
YT5  CAI  H1   SING  N  N  35  
YT5  CAI  H2   SING  N  N  36  
YT5  CAI  H3   SING  N  N  37  
YT5  CAD  H4   SING  N  N  38  
YT5  NAB  H5   SING  N  N  39  
YT5  CAE  H6   SING  N  N  40  
YT5  CA   H7   SING  N  N  41  
YT5  CB   H8   SING  N  N  42  
YT5  CG2  H9   SING  N  N  43  
YT5  CG2  H10  SING  N  N  44  
YT5  CG2  H11  SING  N  N  45  
YT5  CG1  H12  SING  N  N  46  
YT5  CG1  H13  SING  N  N  47  
YT5  CG1  H14  SING  N  N  48  
YT5  N    H15  SING  N  N  49  
YT5  CAR  H16  SING  N  N  50  
YT5  CAR  H17  SING  N  N  51  
YT5  CAT  H18  SING  N  N  52  
YT5  CBC  H19  SING  N  N  53  
YT5  CBD  H20  SING  N  N  54  
YT5  CBE  H21  SING  N  N  55  
YT5  CBF  H22  SING  N  N  56  
YT5  CBG  H23  SING  N  N  57  
YT5  NAU  H24  SING  N  N  58  
YT5  CAW  H25  SING  N  N  59  
YT5  CAX  H27  SING  N  N  60  
YT5  CAY  H29  SING  N  N  61  
YT5  CAZ  H31  SING  N  N  62  
YT5  CBA  H33  SING  N  N  63  
YT5  CBA  H34  SING  N  N  64  
YT5  CBA  H35  SING  N  N  65  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
YT5  InChI             InChI                 1.03   "InChI=1S/C25H31N3O5/c1-5-6-8-13-19(29)26-18(17-11-9-7-10-12-17)14-20(30)27-22(15(2)3)23(31)21-16(4)24(32)28-25(21)33/h5-13,15-16,18,21-22H,14H2,1-4H3,(H,26,29)(H,27,30)(H,28,32,33)/b6-5+,13-8+/t16-,18-,21+,22-/m0/s1"  
YT5  InChIKey          InChI                 1.03   WMLLJSBRSSYYPT-PQUJRENYSA-N  
YT5  SMILES_CANONICAL  CACTVS                3.385  "C/C=C/C=C/C(=O)N[C@@H](CC(=O)N[C@@H](C(C)C)C(=O)[C@H]1[C@H](C)C(=O)NC1=O)c2ccccc2"  
YT5  SMILES            CACTVS                3.385  "CC=CC=CC(=O)N[CH](CC(=O)N[CH](C(C)C)C(=O)[CH]1[CH](C)C(=O)NC1=O)c2ccccc2"  
YT5  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.5  "C/C=C/C=C/C(=O)N[C@@H](CC(=O)N[C@@H](C(C)C)C(=O)[C@H]1[C@@H](C(=O)NC1=O)C)c2ccccc2"  
YT5  SMILES            "OpenEye OEToolkits"  2.0.5  "CC=CC=CC(=O)NC(CC(=O)NC(C(C)C)C(=O)C1C(C(=O)NC1=O)C)c2ccccc2"  
#
_pdbx_chem_comp_identifier.comp_id          YT5
_pdbx_chem_comp_identifier.type             "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program          "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version  2.0.5
_pdbx_chem_comp_identifier.identifier       "(2~{E},4~{E})-~{N}-[(1~{S})-3-[[(2~{S})-3-methyl-1-[(3~{R},4~{S})-4-methyl-2,5-bis(oxidanylidene)pyrrolidin-3-yl]-1-oxidanylidene-butan-2-yl]amino]-3-oxidanylidene-1-phenyl-propyl]hexa-2,4-dienamide"
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
YT5  "Create component"  2016-06-09  RCSB  
YT5  "Initial release"   2016-08-10  RCSB  
YT5  "Modify synonyms"   2020-06-05  PDBE  
#
_pdbx_chem_comp_synonyms.ordinal     1
_pdbx_chem_comp_synonyms.comp_id     YT5
_pdbx_chem_comp_synonyms.name        "(2~{E},4~{E})-~{N}-[(1~{S})-3-[[(2~{S})-3-methyl-1-[(3~{R},4~{S})-4-methyl-2,5-bis(oxidanylidene)pyrrolidin-3-yl]-1-oxidanylidene-butan-2-yl]amino]-3-oxidanylidene-1-phenyl-propyl]hexa-2,4-dienamide"
_pdbx_chem_comp_synonyms.provenance  ?
_pdbx_chem_comp_synonyms.type        ?
##
