data_YL5
# 
_chem_comp.id                                    YL5 
_chem_comp.name                                  "[(1R)-2-(3-fluorophenyl)-1-{[6-(4-methylphenyl)thieno[2,3-d]pyrimidin-4-yl]amino}ethyl]phosphonic acid" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C21 H19 F N3 O3 P S" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2016-05-12 
_chem_comp.pdbx_modified_date                    2017-03-10 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        443.431 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     YL5 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        5JV0 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
YL5 CAY C1  C 0 1 Y N N 3.445  68.479 29.844 1.918  2.427  0.826  CAY YL5 1  
YL5 CAZ C2  C 0 1 Y N N 4.706  68.653 30.415 1.688  3.639  0.198  CAZ YL5 2  
YL5 FBD F1  F 0 1 N N N 5.546  67.712 30.285 0.487  4.247  0.320  FBD YL5 3  
YL5 CBA C3  C 0 1 Y N N 5.057  69.829 31.103 2.688  4.228  -0.556 CBA YL5 4  
YL5 CBB C4  C 0 1 Y N N 4.122  70.851 31.227 3.916  3.605  -0.680 CBB YL5 5  
YL5 CBC C5  C 0 1 Y N N 2.857  70.675 30.663 4.145  2.395  -0.052 CBC YL5 6  
YL5 CAX C6  C 0 1 Y N N 2.510  69.500 29.960 3.146  1.806  0.700  CAX YL5 7  
YL5 CAV C7  C 0 1 N N N 1.263  69.342 29.388 3.397  0.487  1.385  CAV YL5 8  
YL5 CAC C8  C 0 1 N N R 1.261  69.992 27.958 2.922  -0.654 0.483  CAC YL5 9  
YL5 PAA P1  P 0 1 N N N -0.505 70.099 27.267 3.362  -2.252 1.242  PAA YL5 10 
YL5 OAD O1  O 0 1 N N N -1.400 70.423 28.642 4.965  -2.396 1.298  OAD YL5 11 
YL5 OAU O2  O 0 1 N N N -0.603 71.205 26.283 2.812  -2.314 2.614  OAU YL5 12 
YL5 OAE O3  O 0 1 N N N -0.847 68.744 26.759 2.746  -3.451 0.362  OAE YL5 13 
YL5 NAB N1  N 0 1 N N N 1.899  71.345 27.896 1.468  -0.574 0.320  NAB YL5 14 
YL5 C4  C9  C 0 1 Y N N 3.212  71.524 27.584 0.904  -0.728 -0.933 C4  YL5 15 
YL5 N3  N2  N 0 1 Y N N 3.983  70.433 27.340 1.667  -0.948 -1.993 N3  YL5 16 
YL5 C2  C10 C 0 1 Y N N 5.341  70.573 27.036 1.141  -1.097 -3.196 C2  YL5 17 
YL5 N1  N3  N 0 1 Y N N 5.853  71.870 26.990 -0.153 -1.037 -3.406 N1  YL5 18 
YL5 C6  C11 C 0 1 Y N N 5.044  72.927 27.237 -1.008 -0.818 -2.399 C6  YL5 19 
YL5 SAN S1  S 0 1 Y N N 5.421  74.588 27.231 -2.760 -0.689 -2.376 SAN YL5 20 
YL5 C5  C12 C 0 1 Y N N 3.720  72.791 27.547 -0.505 -0.659 -1.103 C5  YL5 21 
YL5 CAL C13 C 0 1 Y N N 3.108  74.007 27.763 -1.556 -0.432 -0.134 CAL YL5 22 
YL5 CAM C14 C 0 1 Y N N 3.892  75.122 27.652 -2.787 -0.418 -0.644 CAM YL5 23 
YL5 CAO C15 C 0 1 Y N N 3.549  76.446 27.766 -4.017 -0.206 0.149  CAO YL5 24 
YL5 CAP C16 C 0 1 Y N N 2.206  76.880 27.734 -3.935 0.008  1.526  CAP YL5 25 
YL5 CAQ C17 C 0 1 Y N N 1.891  78.235 27.795 -5.086 0.205  2.260  CAQ YL5 26 
YL5 CAR C18 C 0 1 Y N N 2.888  79.205 27.888 -6.320 0.189  1.635  CAR YL5 27 
YL5 CAW C19 C 0 1 N N N 2.543  80.562 27.953 -7.573 0.405  2.443  CAW YL5 28 
YL5 CAS C20 C 0 1 Y N N 4.216  78.801 27.902 -6.408 -0.023 0.271  CAS YL5 29 
YL5 CAT C21 C 0 1 Y N N 4.544  77.448 27.832 -5.264 -0.215 -0.476 CAT YL5 30 
YL5 H1  H1  H 0 1 N N N 3.200  67.566 29.321 1.139  1.968  1.418  H1  YL5 31 
YL5 H2  H2  H 0 1 N N N 6.043  69.937 31.531 2.510  5.173  -1.047 H2  YL5 32 
YL5 H3  H3  H 0 1 N N N 4.370  71.763 31.749 4.697  4.065  -1.268 H3  YL5 33 
YL5 H4  H4  H 0 1 N N N 2.123  71.460 30.767 5.105  1.910  -0.150 H4  YL5 34 
YL5 H5  H5  H 0 1 N N N 0.506  69.834 30.016 4.464  0.376  1.579  H5  YL5 35 
YL5 H6  H6  H 0 1 N N N 1.030  68.270 29.305 2.851  0.457  2.327  H6  YL5 36 
YL5 H7  H7  H 0 1 N N N 1.792  69.314 27.274 3.402  -0.570 -0.492 H7  YL5 37 
YL5 H8  H8  H 0 1 N N N -1.821 71.270 28.554 5.409  -1.665 1.750  H8  YL5 38 
YL5 H9  H9  H 0 1 N N N -1.086 68.800 25.841 1.783  -3.428 0.284  H9  YL5 39 
YL5 H10 H10 H 0 1 N N N 1.771  71.754 28.800 0.902  -0.414 1.090  H10 YL5 40 
YL5 H11 H11 H 0 1 N N N 5.967  69.714 26.845 1.798  -1.275 -4.034 H11 YL5 41 
YL5 H12 H12 H 0 1 N N N 2.059  74.076 28.008 -1.358 -0.288 0.918  H12 YL5 42 
YL5 H13 H13 H 0 1 N N N 1.412  76.151 27.661 -2.972 0.020  2.015  H13 YL5 43 
YL5 H14 H14 H 0 1 N N N 0.855  78.540 27.770 -5.024 0.371  3.326  H14 YL5 44 
YL5 H15 H15 H 0 1 N N N 2.419  80.859 29.005 -7.806 1.469  2.476  H15 YL5 45 
YL5 H16 H16 H 0 1 N N N 3.340  81.165 27.493 -8.401 -0.134 1.982  H16 YL5 46 
YL5 H17 H17 H 0 1 N N N 1.600  80.727 27.412 -7.420 0.035  3.457  H17 YL5 47 
YL5 H18 H18 H 0 1 N N N 5.001  79.540 27.968 -7.375 -0.034 -0.212 H18 YL5 48 
YL5 H19 H19 H 0 1 N N N 5.584  77.158 27.828 -5.334 -0.375 -1.542 H19 YL5 49 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
YL5 OAU PAA DOUB N N 1  
YL5 OAE PAA SING N N 2  
YL5 N1  C2  DOUB Y N 3  
YL5 N1  C6  SING Y N 4  
YL5 C2  N3  SING Y N 5  
YL5 SAN C6  SING Y N 6  
YL5 SAN CAM SING Y N 7  
YL5 C6  C5  DOUB Y N 8  
YL5 PAA CAC SING N N 9  
YL5 PAA OAD SING N N 10 
YL5 N3  C4  DOUB Y N 11 
YL5 C5  C4  SING Y N 12 
YL5 C5  CAL SING Y N 13 
YL5 C4  NAB SING N N 14 
YL5 CAM CAL DOUB Y N 15 
YL5 CAM CAO SING N N 16 
YL5 CAP CAO DOUB Y N 17 
YL5 CAP CAQ SING Y N 18 
YL5 CAO CAT SING Y N 19 
YL5 CAQ CAR DOUB Y N 20 
YL5 CAT CAS DOUB Y N 21 
YL5 CAR CAS SING Y N 22 
YL5 CAR CAW SING N N 23 
YL5 NAB CAC SING N N 24 
YL5 CAC CAV SING N N 25 
YL5 CAV CAX SING N N 26 
YL5 CAY CAX DOUB Y N 27 
YL5 CAY CAZ SING Y N 28 
YL5 CAX CBC SING Y N 29 
YL5 FBD CAZ SING N N 30 
YL5 CAZ CBA DOUB Y N 31 
YL5 CBC CBB DOUB Y N 32 
YL5 CBA CBB SING Y N 33 
YL5 CAY H1  SING N N 34 
YL5 CBA H2  SING N N 35 
YL5 CBB H3  SING N N 36 
YL5 CBC H4  SING N N 37 
YL5 CAV H5  SING N N 38 
YL5 CAV H6  SING N N 39 
YL5 CAC H7  SING N N 40 
YL5 OAD H8  SING N N 41 
YL5 OAE H9  SING N N 42 
YL5 NAB H10 SING N N 43 
YL5 C2  H11 SING N N 44 
YL5 CAL H12 SING N N 45 
YL5 CAP H13 SING N N 46 
YL5 CAQ H14 SING N N 47 
YL5 CAW H15 SING N N 48 
YL5 CAW H16 SING N N 49 
YL5 CAW H17 SING N N 50 
YL5 CAS H18 SING N N 51 
YL5 CAT H19 SING N N 52 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
YL5 SMILES           ACDLabs              12.01 "c1c(cccc1F)CC(P(O)(=O)O)Nc2ncnc3c2cc(s3)c4ccc(cc4)C"                                                                                                                               
YL5 InChI            InChI                1.03  "InChI=1S/C21H19FN3O3PS/c1-13-5-7-15(8-6-13)18-11-17-20(23-12-24-21(17)30-18)25-19(29(26,27)28)10-14-3-2-4-16(22)9-14/h2-9,11-12,19H,10H2,1H3,(H,23,24,25)(H2,26,27,28)/t19-/m1/s1" 
YL5 InChIKey         InChI                1.03  ASWGUDOBPNZODI-LJQANCHMSA-N                                                                                                                                                         
YL5 SMILES_CANONICAL CACTVS               3.385 "Cc1ccc(cc1)c2sc3ncnc(N[C@@H](Cc4cccc(F)c4)[P](O)(O)=O)c3c2"                                                                                                                        
YL5 SMILES           CACTVS               3.385 "Cc1ccc(cc1)c2sc3ncnc(N[CH](Cc4cccc(F)c4)[P](O)(O)=O)c3c2"                                                                                                                          
YL5 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.4 "Cc1ccc(cc1)c2cc3c(ncnc3s2)N[C@@H](Cc4cccc(c4)F)P(=O)(O)O"                                                                                                                          
YL5 SMILES           "OpenEye OEToolkits" 2.0.4 "Cc1ccc(cc1)c2cc3c(ncnc3s2)NC(Cc4cccc(c4)F)P(=O)(O)O"                                                                                                                               
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
YL5 "SYSTEMATIC NAME" ACDLabs              12.01 "[(1R)-2-(3-fluorophenyl)-1-{[6-(4-methylphenyl)thieno[2,3-d]pyrimidin-4-yl]amino}ethyl]phosphonic acid"    
YL5 "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.4 "[(1~{R})-2-(3-fluorophenyl)-1-[[6-(4-methylphenyl)thieno[2,3-d]pyrimidin-4-yl]amino]ethyl]phosphonic acid" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
YL5 "Create component" 2016-05-12 RCSB 
YL5 "Initial release"  2017-03-15 RCSB 
# 
