data_Y95
#

_chem_comp.id                                   Y95
_chem_comp.name                                 "5-[(carbamoylcarbamoyl)amino]-2-methyl-N-[(1R)-1-(naphthalen-1-yl)ethyl]benzamide"
_chem_comp.type                                 non-polymer
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C22 H22 N4 O3"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        ?
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2020-07-24
_chem_comp.pdbx_modified_date                   2020-07-31
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       390.435
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    Y95
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       7JIT
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
Y95  O28  O1   O  0  1  N  N  N  54.372  39.081  -1.039  -2.807   3.622  -0.703  O28  Y95   1  
Y95  C27  C1   C  0  1  N  N  N  54.011  37.927  -1.235  -3.926   3.573  -0.233  C27  Y95   2  
Y95  N29  N1   N  0  1  N  N  N  54.701  37.155  -2.074  -4.649   4.702  -0.094  N29  Y95   3  
Y95  N25  N2   N  0  1  N  N  N  52.874  37.509  -0.652  -4.448   2.388   0.145  N25  Y95   4  
Y95  C24  C2   C  0  1  N  N  N  52.261  36.348  -0.845  -3.727   1.259   0.001  C24  Y95   5  
Y95  O26  O2   O  0  1  N  N  N  52.535  35.467  -1.648  -2.607   1.308  -0.469  O26  Y95   6  
Y95  N01  N3   N  0  1  N  N  N  51.332  36.217   0.028  -4.248   0.074   0.378  N01  Y95   7  
Y95  C19  C3   C  0  1  Y  N  N  50.519  35.222   0.285  -3.544  -1.110   0.133  C19  Y95   8  
Y95  C13  C4   C  0  1  Y  N  N  50.763  33.877   0.033  -2.160  -1.124   0.217  C13  Y95   9  
Y95  C3   C5   C  0  1  Y  N  N  49.732  32.959   0.322  -1.463  -2.307  -0.028  C3   Y95  10  
Y95  C10  C6   C  0  1  Y  N  N  48.426  33.452   0.792  -2.163  -3.469  -0.356  C10  Y95  11  
Y95  C16  C7   C  0  1  N  N  N  47.342  32.473   1.077  -1.415  -4.750  -0.622  C16  Y95  12  
Y95  C17  C8   C  0  1  Y  N  N  48.231  34.806   0.967  -3.541  -3.445  -0.438  C17  Y95  13  
Y95  C21  C9   C  0  1  Y  N  N  49.262  35.708   0.698  -4.232  -2.274  -0.190  C21  Y95  14  
Y95  C1   C10  C  0  1  N  N  N  49.903  31.487   0.113   0.013  -2.330   0.059  C1   Y95  15  
Y95  O7   O3   O  0  1  N  N  N  49.399  30.934  -0.855   0.622  -3.344  -0.220  O7   Y95  16  
Y95  N2   N4   N  0  1  N  N  N  50.618  30.820   1.025   0.682  -1.227   0.448  N2   Y95  17  
Y95  C6   C11  C  0  1  N  N  R  50.856  29.398   0.956   2.144  -1.249   0.534  C6   Y95  18  
Y95  C01  C12  C  0  1  N  N  N  51.056  28.786   2.365   2.567  -1.898   1.854  C01  Y95  19  
Y95  C5   C13  C  0  1  Y  N  N  52.014  29.135   0.059   2.673   0.161   0.476  C5   Y95  20  
Y95  C8   C14  C  0  1  Y  N  N  51.907  28.408  -1.224   3.962   0.412  -0.023  C8   Y95  21  
Y95  C11  C15  C  0  1  Y  N  N  53.142  28.215  -2.023   4.440   1.745  -0.076  C11  Y95  22  
Y95  C12  C16  C  0  1  Y  N  N  54.359  28.723  -1.523   3.615   2.790   0.373  C12  Y95  23  
Y95  C9   C17  C  0  1  Y  N  N  54.417  29.399  -0.307   2.371   2.510   0.850  C9   Y95  24  
Y95  C4   C18  C  0  1  Y  N  N  53.266  29.610   0.451   1.902   1.199   0.902  C4   Y95  25  
Y95  C18  C19  C  0  1  Y  N  N  53.121  27.535  -3.253   5.729   1.996  -0.575  C18  Y95  26  
Y95  C22  C20  C  0  1  Y  N  N  51.917  27.027  -3.741   6.500   0.958  -1.000  C22  Y95  27  
Y95  C20  C21  C  0  1  Y  N  N  50.761  27.223  -2.969   6.030  -0.353  -0.949  C20  Y95  28  
Y95  C14  C22  C  0  1  Y  N  N  50.754  27.905  -1.724   4.787  -0.634  -0.471  C14  Y95  29  
Y95  H1   H1   H  0  1  N  N  N  55.508  37.519  -2.539  -4.276   5.554  -0.369  H1   Y95  30  
Y95  H2   H2   H  0  1  N  N  N  54.412  36.212  -2.238  -5.543   4.663   0.281  H2   Y95  31  
Y95  H3   H3   H  0  1  N  N  N  52.445  38.139  -0.005  -5.341   2.349   0.520  H3   Y95  32  
Y95  H4   H4   H  0  1  N  N  N  51.205  37.015   0.617  -5.111   0.043   0.820  H4   Y95  33  
Y95  H5   H5   H  0  1  N  N  N  51.709  33.546  -0.370  -1.624  -0.221   0.471  H5   Y95  34  
Y95  H6   H6   H  0  1  N  N  N  47.402  32.155   2.128  -1.183  -5.238   0.325  H6   Y95  35  
Y95  H7   H7   H  0  1  N  N  N  46.365  32.943   0.891  -2.032  -5.412  -1.229  H7   Y95  36  
Y95  H8   H8   H  0  1  N  N  N  47.458  31.597   0.422  -0.490  -4.527  -1.152  H8   Y95  37  
Y95  H9   H9   H  0  1  N  N  N  47.275  35.171   1.314  -4.081  -4.345  -0.692  H9   Y95  38  
Y95  H10  H10  H  0  1  N  N  N  49.098  36.770   0.806  -5.310  -2.262  -0.251  H10  Y95  39  
Y95  H11  H11  H  0  1  N  N  N  51.007  31.331   1.792   0.196  -0.417   0.670  H11  Y95  40  
Y95  H12  H12  H  0  1  N  N  N  49.970  28.917   0.515   2.549  -1.824  -0.299  H12  Y95  41  
Y95  H13  H13  H  0  1  N  N  N  50.177  29.006   2.989   3.655  -1.915   1.918  H13  Y95  42  
Y95  H14  H14  H  0  1  N  N  N  51.180  27.696   2.277   2.163  -1.324   2.687  H14  Y95  43  
Y95  H15  H15  H  0  1  N  N  N  51.953  29.221   2.829   2.185  -2.918   1.896  H15  Y95  44  
Y95  H16  H16  H  0  1  N  N  N  55.265  28.585  -2.095   3.966   3.811   0.339  H16  Y95  45  
Y95  H17  H17  H  0  1  N  N  N  55.367  29.765   0.054   1.739   3.315   1.194  H17  Y95  46  
Y95  H18  H18  H  0  1  N  N  N  53.347  30.162   1.376   0.909   1.004   1.281  H18  Y95  47  
Y95  H19  H19  H  0  1  N  N  N  54.033  27.406  -3.818   6.107   3.007  -0.621  H19  Y95  48  
Y95  H20  H20  H  0  1  N  N  N  51.875  26.500  -4.683   7.491   1.153  -1.383  H20  Y95  49  
Y95  H21  H21  H  0  1  N  N  N  49.826  26.834  -3.343   6.662  -1.159  -1.293  H21  Y95  50  
Y95  H22  H22  H  0  1  N  N  N  49.830  28.022  -1.177   4.436  -1.655  -0.438  H22  Y95  51  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
Y95  C22  C18  DOUB  Y  N   1  
Y95  C22  C20  SING  Y  N   2  
Y95  C18  C11  SING  Y  N   3  
Y95  C20  C14  DOUB  Y  N   4  
Y95  N29  C27  SING  N  N   5  
Y95  C11  C12  DOUB  Y  N   6  
Y95  C11  C8   SING  Y  N   7  
Y95  C14  C8   SING  Y  N   8  
Y95  O26  C24  DOUB  N  N   9  
Y95  C12  C9   SING  Y  N  10  
Y95  C27  O28  DOUB  N  N  11  
Y95  C27  N25  SING  N  N  12  
Y95  C8   C5   DOUB  Y  N  13  
Y95  O7   C1   DOUB  N  N  14  
Y95  C24  N25  SING  N  N  15  
Y95  C24  N01  SING  N  N  16  
Y95  C9   C4   DOUB  Y  N  17  
Y95  N01  C19  SING  N  N  18  
Y95  C13  C19  DOUB  Y  N  19  
Y95  C13  C3   SING  Y  N  20  
Y95  C5   C4   SING  Y  N  21  
Y95  C5   C6   SING  N  N  22  
Y95  C1   C3   SING  N  N  23  
Y95  C1   N2   SING  N  N  24  
Y95  C19  C21  SING  Y  N  25  
Y95  C3   C10  DOUB  Y  N  26  
Y95  C21  C17  DOUB  Y  N  27  
Y95  C10  C17  SING  Y  N  28  
Y95  C10  C16  SING  N  N  29  
Y95  C6   N2   SING  N  N  30  
Y95  C6   C01  SING  N  N  31  
Y95  N29  H1   SING  N  N  32  
Y95  N29  H2   SING  N  N  33  
Y95  N25  H3   SING  N  N  34  
Y95  N01  H4   SING  N  N  35  
Y95  C13  H5   SING  N  N  36  
Y95  C16  H6   SING  N  N  37  
Y95  C16  H7   SING  N  N  38  
Y95  C16  H8   SING  N  N  39  
Y95  C17  H9   SING  N  N  40  
Y95  C21  H10  SING  N  N  41  
Y95  N2   H11  SING  N  N  42  
Y95  C6   H12  SING  N  N  43  
Y95  C01  H13  SING  N  N  44  
Y95  C01  H14  SING  N  N  45  
Y95  C01  H15  SING  N  N  46  
Y95  C12  H16  SING  N  N  47  
Y95  C9   H17  SING  N  N  48  
Y95  C4   H18  SING  N  N  49  
Y95  C18  H19  SING  N  N  50  
Y95  C22  H20  SING  N  N  51  
Y95  C20  H21  SING  N  N  52  
Y95  C14  H22  SING  N  N  53  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
Y95  SMILES            ACDLabs               12.01  "O=C(NC(Nc1ccc(c(c1)C(NC(C)c2cccc3c2cccc3)=O)C)=O)N"  
Y95  InChI             InChI                 1.03   "InChI=1S/C22H22N4O3/c1-13-10-11-16(25-22(29)26-21(23)28)12-19(13)20(27)24-14(2)17-9-5-7-15-6-3-4-8-18(15)17/h3-12,14H,1-2H3,(H,24,27)(H4,23,25,26,28,29)/t14-/m1/s1"  
Y95  InChIKey          InChI                 1.03   SIBDGNTYRQIIGV-CQSZACIVSA-N  
Y95  SMILES_CANONICAL  CACTVS                3.385  "C[C@@H](NC(=O)c1cc(NC(=O)NC(N)=O)ccc1C)c2cccc3ccccc23"  
Y95  SMILES            CACTVS                3.385  "C[CH](NC(=O)c1cc(NC(=O)NC(N)=O)ccc1C)c2cccc3ccccc23"  
Y95  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.7  "Cc1ccc(cc1C(=O)N[C@H](C)c2cccc3c2cccc3)NC(=O)NC(=O)N"  
Y95  SMILES            "OpenEye OEToolkits"  2.0.7  "Cc1ccc(cc1C(=O)NC(C)c2cccc3c2cccc3)NC(=O)NC(=O)N"  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
Y95  "SYSTEMATIC NAME"  ACDLabs               12.01  "5-[(carbamoylcarbamoyl)amino]-2-methyl-N-[(1R)-1-(naphthalen-1-yl)ethyl]benzamide"  
Y95  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  2.0.7  "5-(aminocarbonylcarbamoylamino)-2-methyl-~{N}-[(1~{R})-1-naphthalen-1-ylethyl]benzamide"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
Y95  "Create component"  2020-07-24  RCSB  
Y95  "Initial release"   2020-08-05  RCSB  
##
