data_XK5
# 
_chem_comp.id                                    XK5 
_chem_comp.name                                  "6-chloro-9-(2-{[(2S)-oxan-2-yl]oxy}ethyl)-2,3,4,9-tetrahydro-1H-pyrido[3,4-b]indol-1-one" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C18 H21 Cl N2 O3" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2023-06-07 
_chem_comp.pdbx_modified_date                    2024-12-13 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        348.824 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     XK5 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        7G6B 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
_chem_comp.pdbx_pcm                              ? 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
XK5 C10  C1  C  0 1 N N N N N N -15.104 8.234  47.170 -0.314 -2.888 -0.255 C10  XK5 1  
XK5 C13  C2  C  0 1 N N N N N N -13.276 10.531 47.179 -2.980 -2.652 0.881  C13  XK5 2  
XK5 O14  O1  O  0 1 N N N N N N -15.919 7.335  47.214 0.874  -2.974 -0.503 O14  XK5 3  
XK5 C16  C3  C  0 1 N N N N N N -14.529 6.325  44.663 0.669  -0.090 -1.401 C16  XK5 4  
XK5 C17  C4  C  0 1 N N N N N N -13.682 5.098  45.008 1.691  0.331  -0.343 C17  XK5 5  
XK5 C19  C5  C  0 1 N N R N N N -11.629 4.005  44.429 3.973  1.012  -0.068 C19  XK5 6  
XK5 C21  C6  C  0 1 N N N N N N -12.515 2.344  42.984 5.376  0.200  1.699  C21  XK5 7  
XK5 C22  C7  C  0 1 N N N N N N -11.308 2.393  42.069 6.641  0.672  0.977  C22  XK5 8  
XK5 C23  C8  C  0 1 N N N N N N -10.698 3.777  42.121 6.301  1.891  0.114  C23  XK5 9  
XK5 C24  C9  C  0 1 N N N N N N -10.406 4.202  43.555 5.181  1.517  -0.861 C24  XK5 10 
XK5 C1   C10 C  0 1 Y N N N N N -10.802 9.760  43.245 -3.945 1.896  0.165  C1   XK5 11 
XK5 C2   C11 C  0 1 Y N N N N N -11.164 8.588  42.545 -2.905 2.564  -0.470 C2   XK5 12 
XK5 C3   C12 C  0 1 Y N N N N N -12.170 7.779  43.018 -1.752 1.896  -0.817 C3   XK5 13 
XK5 C4   C13 C  0 1 Y N N N N N -11.369 10.196 44.412 -3.843 0.566  0.454  C4   XK5 14 
XK5 C5   C14 C  0 1 Y N N N N N -12.412 9.367  44.933 -2.681 -0.139 0.110  C5   XK5 15 
XK5 C6   C15 C  0 1 Y N N N N N -12.798 8.174  44.253 -1.623 0.540  -0.534 C6   XK5 16 
XK5 N7   N1  N  0 1 Y N N N N N -13.848 7.544  44.993 -0.614 -0.374 -0.755 N7   XK5 17 
XK5 C8   C16 C  0 1 Y N N N N N -13.241 9.485  46.105 -2.271 -1.474 0.261  C8   XK5 18 
XK5 C9   C17 C  0 1 Y N N N N N -14.076 8.368  46.139 -1.013 -1.590 -0.271 C9   XK5 19 
XK5 N11  N2  N  0 1 N N N N N N -15.055 9.197  48.160 -1.056 -3.980 0.042  N11  XK5 20 
XK5 C12  C18 C  0 1 N N N N N N -13.789 9.897  48.465 -2.505 -3.929 0.185  C12  XK5 21 
XK5 CL15 CL1 CL 0 0 N N N N N N -9.511  10.767 42.631 -5.387 2.761  0.594  CL15 XK5 22 
XK5 O18  O2  O  0 1 N N N N N N -12.596 4.960  44.072 2.943  0.608  -0.973 O18  XK5 23 
XK5 O20  O3  O  0 1 N N N N N N -12.157 2.713  44.328 4.364  -0.102 0.736  O20  XK5 24 
XK5 H32  H1  H  0 1 N N N N N N -12.263 10.928 47.341 -2.752 -2.696 1.946  H32  XK5 25 
XK5 H31  H2  H  0 1 N N N N N N -13.947 11.349 46.877 -4.056 -2.546 0.742  H31  XK5 26 
XK5 H33  H3  H  0 1 N N N N N N -15.472 6.278  45.227 0.542  0.716  -2.124 H33  XK5 27 
XK5 H34  H4  H  0 1 N N N N N N -14.746 6.318  43.585 1.024  -0.984 -1.913 H34  XK5 28 
XK5 H35  H5  H  0 1 N N N N N N -13.274 5.213  46.023 1.336  1.226  0.169  H35  XK5 29 
XK5 H36  H6  H  0 1 N N N N N N -14.313 4.198  44.966 1.818  -0.475 0.380  H36  XK5 30 
XK5 H37  H7  H  0 1 N N N N N N -11.321 4.184  45.470 3.600  1.810  0.574  H37  XK5 31 
XK5 H38  H8  H  0 1 N N N N N N -12.923 1.322  42.988 5.603  -0.693 2.281  H38  XK5 32 
XK5 H39  H9  H  0 1 N N N N N N -13.279 3.042  42.610 5.022  0.988  2.364  H39  XK5 33 
XK5 H40  H10 H  0 1 N N N N N N -10.566 1.651  42.400 7.399  0.946  1.711  H40  XK5 34 
XK5 H41  H11 H  0 1 N N N N N N -11.619 2.167  41.038 7.019  -0.129 0.342  H41  XK5 35 
XK5 H43  H12 H  0 1 N N N N N N -9.758  3.776  41.550 5.970  2.710  0.753  H43  XK5 36 
XK5 H42  H13 H  0 1 N N N N N N -11.400 4.495  41.671 7.184  2.199  -0.447 H42  XK5 37 
XK5 H45  H14 H  0 1 N N N N N N -10.121 5.264  43.566 5.529  0.732  -1.533 H45  XK5 38 
XK5 H44  H15 H  0 1 N N N N N N -9.578  3.596  43.950 4.894  2.394  -1.441 H44  XK5 39 
XK5 H25  H16 H  0 1 N N N N N N -10.648 8.326  41.633 -3.001 3.617  -0.692 H25  XK5 40 
XK5 H26  H17 H  0 1 N N N N N N -12.475 6.889  42.488 -0.948 2.424  -1.310 H26  XK5 41 
XK5 H27  H18 H  0 1 N N N N N N -11.051 11.103 44.905 -4.657 0.057  0.948  H27  XK5 42 
XK5 H28  H19 H  0 1 N N N N N N -15.883 9.422  48.674 -0.605 -4.830 0.163  H28  XK5 43 
XK5 H29  H20 H  0 1 N N N N N N -13.967 10.677 49.220 -2.832 -4.790 0.768  H29  XK5 44 
XK5 H30  H21 H  0 1 N N N N N N -13.049 9.179  48.847 -2.959 -3.981 -0.804 H30  XK5 45 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
XK5 C1  C4   SING Y N 1  
XK5 C1  CL15 SING N N 2  
XK5 C1  C2   DOUB Y N 3  
XK5 C2  C3   SING Y N 4  
XK5 C3  C6   DOUB Y N 5  
XK5 C4  C5   DOUB Y N 6  
XK5 C5  C8   SING Y N 7  
XK5 C5  C6   SING Y N 8  
XK5 C6  N7   SING Y N 9  
XK5 N7  C9   SING Y N 10 
XK5 N7  C16  SING N N 11 
XK5 C8  C9   DOUB Y N 12 
XK5 C8  C13  SING N N 13 
XK5 C9  C10  SING N N 14 
XK5 C10 N11  SING N N 15 
XK5 C10 O14  DOUB N N 16 
XK5 N11 C12  SING N N 17 
XK5 C12 C13  SING N N 18 
XK5 C16 C17  SING N N 19 
XK5 C17 O18  SING N N 20 
XK5 O18 C19  SING N N 21 
XK5 C19 O20  SING N N 22 
XK5 C19 C24  SING N N 23 
XK5 O20 C21  SING N N 24 
XK5 C21 C22  SING N N 25 
XK5 C22 C23  SING N N 26 
XK5 C23 C24  SING N N 27 
XK5 C13 H32  SING N N 28 
XK5 C13 H31  SING N N 29 
XK5 C16 H33  SING N N 30 
XK5 C16 H34  SING N N 31 
XK5 C17 H35  SING N N 32 
XK5 C17 H36  SING N N 33 
XK5 C19 H37  SING N N 34 
XK5 C21 H38  SING N N 35 
XK5 C21 H39  SING N N 36 
XK5 C22 H40  SING N N 37 
XK5 C22 H41  SING N N 38 
XK5 C23 H43  SING N N 39 
XK5 C23 H42  SING N N 40 
XK5 C24 H45  SING N N 41 
XK5 C24 H44  SING N N 42 
XK5 C2  H25  SING N N 43 
XK5 C3  H26  SING N N 44 
XK5 C4  H27  SING N N 45 
XK5 N11 H28  SING N N 46 
XK5 C12 H29  SING N N 47 
XK5 C12 H30  SING N N 48 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
XK5 SMILES           ACDLabs              12.01 "Clc1cc2c(cc1)n(CCOC1CCCCO1)c1c2CCNC1=O"                                                                                                        
XK5 InChI            InChI                1.06  "InChI=1S/C18H21ClN2O3/c19-12-4-5-15-14(11-12)13-6-7-20-18(22)17(13)21(15)8-10-24-16-3-1-2-9-23-16/h4-5,11,16H,1-3,6-10H2,(H,20,22)/t16-/m1/s1" 
XK5 InChIKey         InChI                1.06  CUEUNNHJIGWCQO-MRXNPFEDSA-N                                                                                                                     
XK5 SMILES_CANONICAL CACTVS               3.385 "Clc1ccc2n(CCO[C@@H]3CCCCO3)c4C(=O)NCCc4c2c1"                                                                                                   
XK5 SMILES           CACTVS               3.385 "Clc1ccc2n(CCO[CH]3CCCCO3)c4C(=O)NCCc4c2c1"                                                                                                     
XK5 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1cc2c(cc1Cl)c3c(n2CCO[C@@H]4CCCCO4)C(=O)NCC3"                                                                                                 
XK5 SMILES           "OpenEye OEToolkits" 2.0.7 "c1cc2c(cc1Cl)c3c(n2CCOC4CCCCO4)C(=O)NCC3"                                                                                                      
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
XK5 "SYSTEMATIC NAME" ACDLabs              12.01 "6-chloro-9-(2-{[(2R)-oxan-2-yl]oxy}ethyl)-2,3,4,9-tetrahydro-1H-pyrido[3,4-b]indol-1-one" 
XK5 "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "6-chloranyl-9-[2-[(2~{R})-oxan-2-yl]oxyethyl]-3,4-dihydro-2~{H}-pyrido[3,4-b]indol-1-one" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
XK5 "Create component" 2023-06-07 RCSB 
XK5 "Initial release"  2024-12-18 RCSB 
# 
