data_XB5
# 
_chem_comp.id                                    XB5 
_chem_comp.name                                  "5-[2-(dimethylamino)ethoxy]-N-{(1R)-1-[(3M,5P)-3-(1-ethyl-1H-pyrazol-3-yl)-5-(1-methyl-1H-pyrazol-4-yl)phenyl]ethyl}-2-methylbenzamide" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C29 H36 N6 O2" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2023-10-26 
_chem_comp.pdbx_modified_date                    2024-03-29 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        500.635 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     XB5 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        8UOB 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
XB5 C21  C1  C 0 1 Y N N N N N 52.364 28.353 -3.563 -5.357 -0.647 0.839  C21  XB5 1  
XB5 C11  C2  C 0 1 N N N N N N 53.443 39.931 0.061  6.094  1.751  3.214  C11  XB5 2  
XB5 C12  C3  C 0 1 Y N N N N N 51.208 35.027 -0.170 2.953  -1.430 -0.160 C12  XB5 3  
XB5 C4   C4  C 0 1 Y N N N N N 49.777 36.781 0.630  5.206  -2.168 0.226  C4   XB5 4  
XB5 C3   C5  C 0 1 Y N N N N N 48.844 35.834 1.005  4.818  -3.480 0.030  C3   XB5 5  
XB5 C2   C6  C 0 1 Y N N N N N 49.053 34.471 0.810  3.503  -3.779 -0.265 C2   XB5 6  
XB5 C5   C7  C 0 1 Y N N N N N 50.959 36.377 0.039  4.276  -1.142 0.131  C5   XB5 7  
XB5 C1   C8  C 0 1 N N N N N N 47.973 33.491 1.191  3.084  -5.211 -0.477 C1   XB5 8  
XB5 C16  C9  C 0 1 N N R N N N 51.673 30.594 0.887  -1.134 -2.389 -1.177 C16  XB5 9  
XB5 C20  C10 C 0 1 Y N N N N N 52.921 29.075 -2.393 -4.042 -0.393 0.197  C20  XB5 10 
XB5 C19  C11 C 0 1 Y N N N N N 52.085 29.462 -1.348 -3.230 -1.463 -0.177 C19  XB5 11 
XB5 C18  C12 C 0 1 Y N N N N N 52.577 30.179 -0.262 -2.007 -1.229 -0.775 C18  XB5 12 
XB5 C17  C13 C 0 1 N N N N N N 52.236 30.177 2.242  -1.286 -2.646 -2.677 C17  XB5 13 
XB5 C24  C14 C 0 1 N N N N N N 52.366 26.852 -6.857 -8.505 0.293  2.340  C24  XB5 14 
XB5 C10  C15 C 0 1 N N N N N N 55.790 39.461 -0.445 5.569  3.813  2.058  C10  XB5 15 
XB5 C13  C16 C 0 1 Y N N N N N 50.261 34.067 0.215  2.560  -2.754 -0.357 C13  XB5 16 
XB5 C14  C17 C 0 1 N N N N N N 50.562 32.611 0.019  1.148  -3.071 -0.663 C14  XB5 17 
XB5 C22  C18 C 0 1 Y N N N N N 53.023 28.003 -4.722 -6.250 0.300  1.249  C22  XB5 18 
XB5 C26  C19 C 0 1 Y N N N N N 51.057 27.889 -3.775 -5.911 -1.908 1.131  C26  XB5 19 
XB5 C27  C20 C 0 1 Y N N N N N 54.272 29.405 -2.351 -3.621 0.911  -0.038 C27  XB5 20 
XB5 C28  C21 C 0 1 Y N N N N N 54.779 30.122 -1.271 -2.388 1.142  -0.640 C28  XB5 21 
XB5 C29  C22 C 0 1 Y N N N N N 56.203 30.503 -1.239 -1.933 2.531  -0.894 C29  XB5 22 
XB5 C32  C23 C 0 1 N N N N N N 58.749 32.614 -0.006 0.283  5.086  -2.171 C32  XB5 23 
XB5 C33  C24 C 0 1 N N N N N N 60.226 32.399 -0.234 1.640  4.663  -1.603 C33  XB5 24 
XB5 C34  C25 C 0 1 Y N N N N N 58.352 30.737 -1.647 -1.859 4.760  -0.908 C34  XB5 25 
XB5 C35  C26 C 0 1 Y N N N N N 57.262 30.012 -2.022 -2.592 3.707  -0.486 C35  XB5 26 
XB5 C36  C27 C 0 1 Y N N N N N 53.930 30.502 -0.235 -1.582 0.065  -1.005 C36  XB5 27 
XB5 C7   C28 C 0 1 N N N N N N 52.808 37.215 -1.269 6.043  0.371  0.620  C7   XB5 28 
XB5 C8   C29 C 0 1 N N N N N N 54.122 37.667 -0.696 6.288  1.871  0.803  C8   XB5 29 
XB5 N15  N1  N 0 1 N N N N N N 51.380 32.033 0.910  0.265  -2.075 -0.875 N15  XB5 30 
XB5 N23  N2  N 0 1 Y N N N N N 52.140 27.389 -5.517 -7.311 -0.342 1.777  N23  XB5 31 
XB5 N25  N3  N 0 1 Y N N N N N 50.912 27.303 -4.956 -7.078 -1.720 1.687  N25  XB5 32 
XB5 N30  N4  N 0 1 Y N N N N N 56.625 31.479 -0.426 -0.838 2.882  -1.535 N30  XB5 33 
XB5 N31  N5  N 0 1 Y N N N N N 57.946 31.601 -0.699 -0.775 4.281  -1.556 N31  XB5 34 
XB5 N9   N6  N 0 1 N N N N N N 54.377 39.139 -0.786 5.554  2.346  1.984  N9   XB5 35 
XB5 O37  O1  O 0 1 N N N N N N 50.065 31.986 -0.914 0.784  -4.229 -0.722 O37  XB5 36 
XB5 O6   O2  O 0 1 N N N N N N 51.783 37.426 -0.288 4.664  0.147  0.324  O6   XB5 37 
XB5 H11A H1  H 0 0 N N N N N N 53.673 41.002 -0.041 7.143  2.026  3.320  H11A XB5 38 
XB5 H11C H2  H 0 0 N N N N N N 52.408 39.746 -0.262 5.532  2.120  4.072  H11C XB5 39 
XB5 H11B H3  H 0 0 N N N N N N 53.558 39.631 1.113  6.006  0.666  3.161  H11B XB5 40 
XB5 H12  H4  H 0 1 N N N N N N 52.134 34.715 -0.630 2.227  -0.633 -0.230 H12  XB5 41 
XB5 H4   H5  H 0 1 N N N N N N 49.584 37.830 0.798  6.237  -1.940 0.453  H4   XB5 42 
XB5 H3   H6  H 0 1 N N N N N N 47.923 36.161 1.464  5.546  -4.274 0.106  H3   XB5 43 
XB5 H1B  H7  H 0 1 N N N N N N 47.295 33.341 0.338  2.668  -5.608 0.449  H1B  XB5 44 
XB5 H1C  H8  H 0 1 N N N N N N 48.431 32.530 1.468  2.331  -5.256 -1.263 H1C  XB5 45 
XB5 H1A  H9  H 0 1 N N N N N N 47.404 33.886 2.046  3.951  -5.803 -0.770 H1A  XB5 46 
XB5 H16  H10 H 0 1 N N N N N N 50.720 30.061 0.757  -1.434 -3.279 -0.623 H16  XB5 47 
XB5 H19  H11 H 0 1 N N N N N N 51.038 29.201 -1.381 -3.558 -2.476 0.002  H19  XB5 48 
XB5 H17C H12 H 0 0 N N N N N N 52.458 29.100 2.232  -0.655 -3.485 -2.968 H17C XB5 49 
XB5 H17B H13 H 0 0 N N N N N N 53.160 30.739 2.444  -2.327 -2.880 -2.902 H17B XB5 50 
XB5 H17A H14 H 0 0 N N N N N N 51.497 30.392 3.028  -0.986 -1.756 -3.231 H17A XB5 51 
XB5 H24C H15 H 0 0 N N N N N N 51.430 26.423 -7.243 -9.249 0.429  1.555  H24C XB5 52 
XB5 H24B H16 H 0 0 N N N N N N 52.701 27.660 -7.524 -8.918 -0.342 3.125  H24B XB5 53 
XB5 H24A H17 H 0 0 N N N N N N 53.137 26.069 -6.813 -8.238 1.262  2.760  H24A XB5 54 
XB5 H10B H18 H 0 0 N N N N N N 55.947 40.547 -0.520 5.101  4.227  1.165  H10B XB5 55 
XB5 H10A H19 H 0 0 N N N N N N 56.004 39.129 0.582  5.019  4.138  2.941  H10A XB5 56 
XB5 H10C H20 H 0 0 N N N N N N 56.463 38.944 -1.145 6.600  4.163  2.122  H10C XB5 57 
XB5 H22  H21 H 0 1 N N N N N N 54.063 28.190 -4.947 -6.128 1.370  1.165  H22  XB5 58 
XB5 H26  H22 H 0 1 N N N N N N 50.258 27.997 -3.057 -5.452 -2.865 0.929  H26  XB5 59 
XB5 H27  H23 H 0 1 N N N N N N 54.927 29.105 -3.156 -4.249 1.743  0.247  H27  XB5 60 
XB5 H32A H24 H 0 0 N N N N N N 58.470 33.610 -0.382 0.112  6.140  -1.954 H32A XB5 61 
XB5 H32B H25 H 0 0 N N N N N N 58.542 32.558 1.073  0.277  4.931  -3.250 H32B XB5 62 
XB5 H33A H26 H 0 0 N N N N N N 60.796 33.174 0.299  2.428  5.261  -2.060 H33A XB5 63 
XB5 H33C H27 H 0 0 N N N N N N 60.515 31.407 0.144  1.646  4.818  -0.524 H33C XB5 64 
XB5 H33B H28 H 0 0 N N N N N N 60.443 32.459 -1.311 1.812  3.609  -1.820 H33B XB5 65 
XB5 H34  H29 H 0 1 N N N N N N 59.354 30.637 -2.037 -2.097 5.802  -0.752 H34  XB5 66 
XB5 H35  H30 H 0 1 N N N N N N 57.220 29.227 -2.763 -3.519 3.757  0.066  H35  XB5 67 
XB5 H36  H31 H 0 1 N N N N N N 54.328 31.056 0.602  -0.625 0.242  -1.473 H36  XB5 68 
XB5 H7B  H32 H 0 1 N N N N N N 52.863 36.146 -1.523 6.657  0.001  -0.201 H7B  XB5 69 
XB5 H7A  H33 H 0 1 N N N N N N 52.579 37.796 -2.175 6.308  -0.154 1.538  H7A  XB5 70 
XB5 H8B  H34 H 0 1 N N N N N N 54.148 37.380 0.366  7.354  2.051  0.941  H8B  XB5 71 
XB5 H8A  H35 H 0 1 N N N N N N 54.927 37.147 -1.236 5.940  2.406  -0.080 H8A  XB5 72 
XB5 H15  H36 H 0 1 N N N N N N 51.805 32.601 1.615  0.555  -1.151 -0.827 H15  XB5 73 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
XB5 C1  C2   SING N N 1  
XB5 C2  C3   DOUB Y N 2  
XB5 C3  C4   SING Y N 3  
XB5 C4  C5   DOUB Y N 4  
XB5 C5  O6   SING N N 5  
XB5 O6  C7   SING N N 6  
XB5 C7  C8   SING N N 7  
XB5 C8  N9   SING N N 8  
XB5 N9  C10  SING N N 9  
XB5 N9  C11  SING N N 10 
XB5 C5  C12  SING Y N 11 
XB5 C12 C13  DOUB Y N 12 
XB5 C13 C14  SING N N 13 
XB5 C14 N15  SING N N 14 
XB5 N15 C16  SING N N 15 
XB5 C16 C17  SING N N 16 
XB5 C16 C18  SING N N 17 
XB5 C18 C19  DOUB Y N 18 
XB5 C19 C20  SING Y N 19 
XB5 C20 C21  SING N N 20 
XB5 C21 C22  DOUB Y N 21 
XB5 C22 N23  SING Y N 22 
XB5 N23 C24  SING N N 23 
XB5 N23 N25  SING Y N 24 
XB5 N25 C26  DOUB Y N 25 
XB5 C20 C27  DOUB Y N 26 
XB5 C27 C28  SING Y N 27 
XB5 C28 C29  SING N N 28 
XB5 C29 N30  DOUB Y N 29 
XB5 N30 N31  SING Y N 30 
XB5 N31 C32  SING N N 31 
XB5 C32 C33  SING N N 32 
XB5 N31 C34  SING Y N 33 
XB5 C34 C35  DOUB Y N 34 
XB5 C28 C36  DOUB Y N 35 
XB5 C14 O37  DOUB N N 36 
XB5 C13 C2   SING Y N 37 
XB5 C36 C18  SING Y N 38 
XB5 C26 C21  SING Y N 39 
XB5 C35 C29  SING Y N 40 
XB5 C11 H11A SING N N 41 
XB5 C11 H11C SING N N 42 
XB5 C11 H11B SING N N 43 
XB5 C12 H12  SING N N 44 
XB5 C4  H4   SING N N 45 
XB5 C3  H3   SING N N 46 
XB5 C1  H1B  SING N N 47 
XB5 C1  H1C  SING N N 48 
XB5 C1  H1A  SING N N 49 
XB5 C16 H16  SING N N 50 
XB5 C19 H19  SING N N 51 
XB5 C17 H17C SING N N 52 
XB5 C17 H17B SING N N 53 
XB5 C17 H17A SING N N 54 
XB5 C24 H24C SING N N 55 
XB5 C24 H24B SING N N 56 
XB5 C24 H24A SING N N 57 
XB5 C10 H10B SING N N 58 
XB5 C10 H10A SING N N 59 
XB5 C10 H10C SING N N 60 
XB5 C22 H22  SING N N 61 
XB5 C26 H26  SING N N 62 
XB5 C27 H27  SING N N 63 
XB5 C32 H32A SING N N 64 
XB5 C32 H32B SING N N 65 
XB5 C33 H33A SING N N 66 
XB5 C33 H33C SING N N 67 
XB5 C33 H33B SING N N 68 
XB5 C34 H34  SING N N 69 
XB5 C35 H35  SING N N 70 
XB5 C36 H36  SING N N 71 
XB5 C7  H7B  SING N N 72 
XB5 C7  H7A  SING N N 73 
XB5 C8  H8B  SING N N 74 
XB5 C8  H8A  SING N N 75 
XB5 N15 H15  SING N N 76 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
XB5 SMILES           ACDLabs              12.01 "CCn1ccc(n1)c1cc(cc(c1)c1cn(C)nc1)C(C)NC(=O)c1cc(OCCN(C)C)ccc1C"                                                                                                                   
XB5 InChI            InChI                1.06  "InChI=1S/C29H36N6O2/c1-7-35-11-10-28(32-35)24-15-22(14-23(16-24)25-18-30-34(6)19-25)21(3)31-29(36)27-17-26(9-8-20(27)2)37-13-12-33(4)5/h8-11,14-19,21H,7,12-13H2,1-6H3,(H,31,36)" 
XB5 InChIKey         InChI                1.06  ZOMNORZQANASQP-UHFFFAOYSA-N                                                                                                                                                        
XB5 SMILES_CANONICAL CACTVS               3.385 "CCn1ccc(n1)c2cc(cc(c2)c3cnn(C)c3)[C@@H](C)NC(=O)c4cc(OCCN(C)C)ccc4C"                                                                                                              
XB5 SMILES           CACTVS               3.385 "CCn1ccc(n1)c2cc(cc(c2)c3cnn(C)c3)[CH](C)NC(=O)c4cc(OCCN(C)C)ccc4C"                                                                                                                
XB5 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CCn1ccc(n1)c2cc(cc(c2)[C@@H](C)NC(=O)c3cc(ccc3C)OCCN(C)C)c4cnn(c4)C"                                                                                                              
XB5 SMILES           "OpenEye OEToolkits" 2.0.7 "CCn1ccc(n1)c2cc(cc(c2)C(C)NC(=O)c3cc(ccc3C)OCCN(C)C)c4cnn(c4)C"                                                                                                                   
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
XB5 "SYSTEMATIC NAME" ACDLabs              12.01 "5-[2-(dimethylamino)ethoxy]-N-{(1R)-1-[(3M,5P)-3-(1-ethyl-1H-pyrazol-3-yl)-5-(1-methyl-1H-pyrazol-4-yl)phenyl]ethyl}-2-methylbenzamide" 
XB5 "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "5-[2-(dimethylamino)ethoxy]-~{N}-[(1~{R})-1-[3-(1-ethylpyrazol-3-yl)-5-(1-methylpyrazol-4-yl)phenyl]ethyl]-2-methyl-benzamide"          
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
XB5 "Create component" 2023-10-26 RCSB 
XB5 "Initial release"  2024-04-03 RCSB 
# 
