data_XA5
# 
_chem_comp.id                                    XA5 
_chem_comp.name                                  "N,N'-di(acridin-9-yl)butane-1,4-diamine" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C30 H26 N4" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2023-10-25 
_chem_comp.pdbx_modified_date                    2024-08-02 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        442.554 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     XA5 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        8WQ7 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBJ 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
XA5 C1  C1  C 0 1 Y N N N N N -10.456 -28.195 -15.024 6.280  3.544  -0.238 C1  XA5 1  
XA5 C2  C2  C 0 1 Y N N N N N -10.093 -28.155 -13.678 4.982  3.597  0.268  C2  XA5 2  
XA5 C3  C3  C 0 1 Y N N N N N -10.207 -26.965 -12.965 4.290  2.456  0.534  C3  XA5 3  
XA5 C4  C4  C 0 1 Y N N N N N -10.696 -25.786 -13.599 4.888  1.207  0.296  C4  XA5 4  
XA5 C5  C5  C 0 1 Y N N N N N -11.054 -25.830 -14.918 6.209  1.149  -0.221 C5  XA5 5  
XA5 C7  C6  C 0 1 Y N N N N N -11.661 -23.528 -14.903 6.182  -1.179 -0.218 C7  XA5 6  
XA5 C9  C7  C 0 1 Y N N N N N -10.823 -24.559 -12.859 4.195  0.010  0.562  C9  XA5 7  
XA5 C11 C8  C 0 1 Y N N N N N -11.973 -21.033 -13.664 4.896  -3.596 0.276  C11 XA5 8  
XA5 CAI C9  C 0 1 Y N N N N N -6.337  -23.999 -2.346  -6.194 3.576  0.232  CAI XA5 9  
XA5 CAJ C10 C 0 1 Y N N N N N -6.426  -24.390 -3.682  -4.895 3.596  -0.275 CAJ XA5 10 
XA5 CAK C11 C 0 1 Y N N N N N -7.633  -24.272 -4.367  -4.231 2.438  -0.539 CAK XA5 11 
XA5 CAL C12 C 0 1 Y N N N N N -8.787  -23.759 -3.712  -4.859 1.205  -0.297 CAL XA5 12 
XA5 CAM C13 C 0 1 Y N N N N N -8.698  -23.375 -2.398  -6.182 1.179  0.219  CAM XA5 13 
XA5 CAN C14 C 0 1 Y N N N N N -7.461  -23.492 -1.694  -6.834 2.402  0.478  CAN XA5 14 
XA5 CAO C15 C 0 1 Y N N N N N -10.992 -22.733 -2.335  -6.210 -1.149 0.221  CAO XA5 15 
XA5 CAP C16 C 0 1 Y N N N N N -11.155 -23.093 -3.647  -4.888 -1.207 -0.295 CAP XA5 16 
XA5 CAQ C17 C 0 1 Y N N N N N -10.049 -23.613 -4.398  -4.195 -0.010 -0.561 CAQ XA5 17 
XA5 CAR C18 C 0 1 Y N N N N N -12.423 -22.945 -4.273  -4.290 -2.456 -0.535 CAR XA5 18 
XA5 CAS C19 C 0 1 Y N N N N N -13.495 -22.438 -3.547  -4.983 -3.597 -0.271 CAS XA5 19 
XA5 CAU C20 C 0 1 Y N N N N N -13.327 -22.062 -2.209  -6.281 -3.545 0.236  CAU XA5 20 
XA5 CAV C21 C 0 1 Y N N N N N -12.090 -22.207 -1.593  -6.892 -2.355 0.481  CAV XA5 21 
XA5 CBB C22 C 0 1 N N N N N N -9.730  -23.416 -6.966  -1.923 0.091  0.017  CBB XA5 22 
XA5 CBC C23 C 0 1 N N N N N N -10.729 -23.642 -8.101  -0.515 -0.061 -0.562 CBC XA5 23 
XA5 CBD C24 C 0 1 N N N N N N -10.131 -24.325 -9.322  0.515  0.060  0.563  CBD XA5 24 
XA5 NAA N1  N 0 1 Y N N N N N -9.780  -22.873 -1.728  -6.798 0.023  0.456  NAA XA5 25 
XA5 NAB N2  N 0 1 N N N N N N -10.282 -24.011 -5.772  -2.912 -0.025 -1.063 NAB XA5 26 
XA5 C6  C25 C 0 1 Y N N N N N -10.937 -27.049 -15.656 6.890  2.355  -0.487 C6  XA5 27 
XA5 C8  C26 C 0 1 Y N N N N N -11.327 -23.402 -13.573 4.859  -1.205 0.298  C8  XA5 28 
XA5 C10 C27 C 0 1 Y N N N N N -11.483 -22.124 -12.952 4.231  -2.439 0.540  C10 XA5 29 
XA5 C12 C28 C 0 1 Y N N N N N -12.317 -21.179 -15.013 6.196  -3.576 -0.230 C12 XA5 30 
XA5 C13 C29 C 0 1 Y N N N N N -12.161 -22.412 -15.637 6.835  -2.402 -0.477 C13 XA5 31 
XA5 C14 C30 C 0 1 N N N N N N -11.168 -24.029 -10.351 1.923  -0.091 -0.016 C14 XA5 32 
XA5 N1  N3  N 0 1 Y N N N N N -11.529 -24.719 -15.553 6.798  -0.023 -0.455 N1  XA5 33 
XA5 N2  N4  N 0 1 N N N N N N -10.409 -24.563 -11.463 2.912  0.025  1.064  N2  XA5 34 
XA5 H1  H1  H 0 1 N N N N N N -10.364 -29.117 -15.579 6.809  4.464  -0.441 H1  XA5 35 
XA5 H2  H2  H 0 1 N N N N N N -9.724  -29.045 -13.190 4.520  4.556  0.452  H2  XA5 36 
XA5 H3  H3  H 0 1 N N N N N N -9.923  -26.935 -11.924 3.285  2.511  0.927  H3  XA5 37 
XA5 H4  H4  H 0 1 N N N N N N -12.088 -20.076 -13.177 4.412  -4.543 0.463  H4  XA5 38 
XA5 H5  H5  H 0 1 N N N N N N -5.399  -24.089 -1.817  -6.699 4.509  0.437  H5  XA5 39 
XA5 H6  H6  H 0 1 N N N N N N -5.557  -24.785 -4.187  -4.411 4.543  -0.462 H6  XA5 40 
XA5 H7  H7  H 0 1 N N N N N N -7.693  -24.572 -5.403  -3.225 2.467  -0.932 H7  XA5 41 
XA5 H8  H8  H 0 1 N N N N N N -7.396  -23.189 -0.659  -7.839 2.406  0.875  H8  XA5 42 
XA5 H9  H9  H 0 1 N N N N N N -12.553 -23.225 -5.308  -3.285 -2.510 -0.928 H9  XA5 43 
XA5 H10 H10 H 0 1 N N N N N N -14.462 -22.334 -4.017  -4.521 -4.556 -0.456 H10 XA5 44 
XA5 H11 H11 H 0 1 N N N N N N -14.161 -21.658 -1.654  -6.810 -4.464 0.437  H11 XA5 45 
XA5 H12 H12 H 0 1 N N N N N N -11.961 -21.923 -0.559  -7.898 -2.335 0.874  H12 XA5 46 
XA5 H13 H13 H 0 1 N N N N N N -8.769  -23.892 -7.212  -2.098 -0.692 0.756  H13 XA5 47 
XA5 H14 H14 H 0 1 N N N N N N -9.576  -22.338 -6.811  -2.017 1.067  0.493  H14 XA5 48 
XA5 H15 H15 H 0 1 N N N N N N -11.128 -22.665 -8.411  -0.421 -1.037 -1.038 H15 XA5 49 
XA5 H16 H16 H 0 1 N N N N N N -11.549 -24.269 -7.721  -0.340 0.722  -1.301 H16 XA5 50 
XA5 H17 H17 H 0 1 N N N N N N -10.017 -25.408 -9.164  0.421  1.037  1.038  H17 XA5 51 
XA5 H18 H18 H 0 1 N N N N N N -9.158  -23.889 -9.592  0.340  -0.722 1.301  H18 XA5 52 
XA5 H19 H19 H 0 1 N N N N N N -11.273 -23.949 -5.891  -2.783 0.702  -1.750 H19 XA5 53 
XA5 H20 H20 H 0 1 N N N N N N -11.220 -27.082 -16.698 7.896  2.334  -0.880 H20 XA5 54 
XA5 H21 H21 H 0 1 N N N N N N -11.216 -22.003 -11.913 3.226  -2.468 0.932  H21 XA5 55 
XA5 H22 H22 H 0 1 N N N N N N -12.703 -20.336 -15.568 6.702  -4.508 -0.431 H22 XA5 56 
XA5 H23 H23 H 0 1 N N N N N N -12.419 -22.525 -16.680 7.841  -2.405 -0.869 H23 XA5 57 
XA5 H24 H24 H 0 1 N N N N N N -11.376 -22.954 -10.452 2.017  -1.067 -0.492 H24 XA5 58 
XA5 H25 H25 H 0 1 N N N N N N -12.110 -24.570 -10.177 2.098  0.692  -0.755 H25 XA5 59 
XA5 H26 H26 H 0 1 N N N N N N -10.254 -25.525 -11.238 2.783  -0.702 1.751  H26 XA5 60 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
XA5 C6  C1  DOUB Y N 1  
XA5 C6  C5  SING Y N 2  
XA5 C13 C12 DOUB Y N 3  
XA5 C13 C7  SING Y N 4  
XA5 N1  C5  DOUB Y N 5  
XA5 N1  C7  SING Y N 6  
XA5 C1  C2  SING Y N 7  
XA5 C12 C11 SING Y N 8  
XA5 C5  C4  SING Y N 9  
XA5 C7  C8  DOUB Y N 10 
XA5 C2  C3  DOUB Y N 11 
XA5 C11 C10 DOUB Y N 12 
XA5 C4  C3  SING Y N 13 
XA5 C4  C9  DOUB Y N 14 
XA5 C8  C10 SING Y N 15 
XA5 C8  C9  SING Y N 16 
XA5 C9  N2  SING N N 17 
XA5 N2  C14 SING N N 18 
XA5 C14 CBD SING N N 19 
XA5 CBD CBC SING N N 20 
XA5 CBC CBB SING N N 21 
XA5 CBB NAB SING N N 22 
XA5 NAB CAQ SING N N 23 
XA5 CAQ CAL DOUB Y N 24 
XA5 CAQ CAP SING Y N 25 
XA5 CAK CAL SING Y N 26 
XA5 CAK CAJ DOUB Y N 27 
XA5 CAR CAP DOUB Y N 28 
XA5 CAR CAS SING Y N 29 
XA5 CAL CAM SING Y N 30 
XA5 CAJ CAI SING Y N 31 
XA5 CAP CAO SING Y N 32 
XA5 CAS CAU DOUB Y N 33 
XA5 CAM NAA DOUB Y N 34 
XA5 CAM CAN SING Y N 35 
XA5 CAI CAN DOUB Y N 36 
XA5 CAO NAA SING Y N 37 
XA5 CAO CAV DOUB Y N 38 
XA5 CAU CAV SING Y N 39 
XA5 C1  H1  SING N N 40 
XA5 C2  H2  SING N N 41 
XA5 C3  H3  SING N N 42 
XA5 C11 H4  SING N N 43 
XA5 CAI H5  SING N N 44 
XA5 CAJ H6  SING N N 45 
XA5 CAK H7  SING N N 46 
XA5 CAN H8  SING N N 47 
XA5 CAR H9  SING N N 48 
XA5 CAS H10 SING N N 49 
XA5 CAU H11 SING N N 50 
XA5 CAV H12 SING N N 51 
XA5 CBB H13 SING N N 52 
XA5 CBB H14 SING N N 53 
XA5 CBC H15 SING N N 54 
XA5 CBC H16 SING N N 55 
XA5 CBD H17 SING N N 56 
XA5 CBD H18 SING N N 57 
XA5 NAB H19 SING N N 58 
XA5 C6  H20 SING N N 59 
XA5 C10 H21 SING N N 60 
XA5 C12 H22 SING N N 61 
XA5 C13 H23 SING N N 62 
XA5 C14 H24 SING N N 63 
XA5 C14 H25 SING N N 64 
XA5 N2  H26 SING N N 65 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
XA5 InChI            InChI                1.06  "InChI=1S/C30H26N4/c1-5-15-25-21(11-1)29(22-12-2-6-16-26(22)33-25)31-19-9-10-20-32-30-23-13-3-7-17-27(23)34-28-18-8-4-14-24(28)30/h1-8,11-18H,9-10,19-20H2,(H,31,33)(H,32,34)" 
XA5 InChIKey         InChI                1.06  MKFRLGCMWOIRSO-UHFFFAOYSA-N                                                                                                                                                    
XA5 SMILES_CANONICAL CACTVS               3.385 "C(CCNc1c2ccccc2nc3ccccc13)CNc4c5ccccc5nc6ccccc46"                                                                                                                             
XA5 SMILES           CACTVS               3.385 "C(CCNc1c2ccccc2nc3ccccc13)CNc4c5ccccc5nc6ccccc46"                                                                                                                             
XA5 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1ccc2c(c1)c(c3ccccc3n2)NCCCCNc4c5ccccc5nc6c4cccc6"                                                                                                                           
XA5 SMILES           "OpenEye OEToolkits" 2.0.7 "c1ccc2c(c1)c(c3ccccc3n2)NCCCCNc4c5ccccc5nc6c4cccc6"                                                                                                                           
# 
_pdbx_chem_comp_identifier.comp_id           XA5 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   2.0.7 
_pdbx_chem_comp_identifier.identifier        "~{N},~{N}'-di(acridin-9-yl)butane-1,4-diamine" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
XA5 "Create component" 2023-10-25 PDBJ 
XA5 "Initial release"  2024-08-07 RCSB 
# 
