data_VN5
# 
_chem_comp.id                                    VN5 
_chem_comp.name                                  "~{N}'-[2-[1-(4-methoxyphenyl)cyclopropyl]-7-(4-methylpiperazin-1-yl)quinazolin-4-yl]ethane-1,2-diamine" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C25 H32 N6 O" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2023-03-20 
_chem_comp.pdbx_modified_date                    2023-06-09 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        432.561 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     VN5 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        8OGB 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBE 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
VN5 C1  C1  C 0 1 Y N N -22.229 -26.589 7.215  3.166  -1.520 0.360  C1  VN5 1  
VN5 C2  C2  C 0 1 Y N N -21.490 -25.429 7.545  3.514  -0.164 0.360  C2  VN5 2  
VN5 C3  C3  C 0 1 Y N N -20.207 -25.600 8.113  2.558  0.809  0.142  C3  VN5 3  
VN5 C11 C4  C 0 1 Y N N -17.978 -28.199 9.114  -0.975 0.948  -0.503 C11 VN5 4  
VN5 C12 C5  C 0 1 N N N -16.609 -28.256 9.814  -2.027 2.000  -0.743 C12 VN5 5  
VN5 C13 C6  C 0 1 Y N N -15.455 -28.864 9.019  -3.396 1.686  -0.196 C13 VN5 6  
VN5 C14 C7  C 0 1 Y N N -15.385 -28.772 7.635  -4.195 2.705  0.289  C14 VN5 7  
VN5 C15 C8  C 0 1 Y N N -14.303 -29.369 6.974  -5.452 2.421  0.786  C15 VN5 8  
VN5 C16 C9  C 0 1 Y N N -13.293 -30.052 7.667  -5.913 1.112  0.798  C16 VN5 9  
VN5 C17 C10 C 0 1 Y N N -13.389 -30.114 9.062  -5.109 0.092  0.311  C17 VN5 10 
VN5 C18 C11 C 0 1 Y N N -14.470 -29.539 9.742  -3.852 0.381  -0.184 C18 VN5 11 
VN5 C19 C12 C 0 1 N N N -16.356 -27.242 11.000 -1.579 3.463  -0.730 C19 VN5 12 
VN5 C20 C13 C 0 1 N N N -16.684 -28.723 11.307 -1.952 2.788  -2.052 C20 VN5 13 
VN5 C22 C14 C 0 1 N N N -11.381 -31.641 7.735  -7.557 -0.539 1.269  C22 VN5 14 
VN5 C24 C15 C 0 1 N N N -21.467 -23.109 8.280  5.347  1.031  -0.524 C24 VN5 15 
VN5 C25 C16 C 0 1 N N N -21.844 -21.649 7.954  6.773  1.483  -0.205 C25 VN5 16 
VN5 C27 C17 C 0 1 N N N -23.699 -22.576 6.458  7.115  -0.519 1.111  C27 VN5 17 
VN5 C28 C18 C 0 1 N N N -23.450 -23.931 7.151  5.688  -0.972 0.792  C28 VN5 18 
VN5 C29 C19 C 0 1 N N N -23.057 -20.217 6.491  9.020  0.696  0.239  C29 VN5 19 
VN5 C30 C20 C 0 1 N N N -19.592 -31.833 7.891  -2.260 -2.963 -0.553 C30 VN5 20 
VN5 C4  C21 C 0 1 Y N N -19.734 -26.911 8.305  1.230  0.430  -0.081 C4  VN5 21 
VN5 C5  C22 C 0 1 Y N N -20.481 -28.094 7.982  0.889  -0.945 -0.079 C5  VN5 22 
VN5 C6  C23 C 0 1 Y N N -21.759 -27.899 7.420  1.879  -1.910 0.146  C6  VN5 23 
VN5 C7  C24 C 0 1 Y N N -19.863 -29.357 8.238  -0.462 -1.298 -0.306 C7  VN5 24 
VN5 N8  N1  N 0 1 Y N N -18.613 -29.349 8.797  -1.339 -0.324 -0.510 N8  VN5 25 
VN5 N9  N2  N 0 1 N N N -20.409 -30.592 7.981  -0.856 -2.619 -0.316 N9  VN5 26 
VN5 N10 N3  N 0 1 Y N N -18.530 -27.006 8.860  0.262  1.334  -0.298 N10 VN5 27 
VN5 O21 O1  O 0 1 N N N -12.204 -30.678 7.021  -7.149 0.830  1.287  O21 VN5 28 
VN5 N23 N4  N 0 1 N N N -21.999 -24.109 7.325  4.838  0.208  0.583  N23 VN5 29 
VN5 N26 N5  N 0 1 N N N -23.164 -21.465 7.278  7.624  0.303  0.005  N26 VN5 30 
VN5 C31 C25 C 0 1 N N N -19.216 -32.335 9.298  -2.428 -4.483 -0.513 C31 VN5 31 
VN5 N32 N6  N 0 1 N N N -20.378 -32.198 10.182 -3.836 -4.828 -0.752 N32 VN5 32 
VN5 H1  H1  H 0 1 N N N -23.210 -26.462 6.781  3.928  -2.266 0.529  H1  VN5 33 
VN5 H2  H2  H 0 1 N N N -19.606 -24.747 8.392  2.834  1.853  0.143  H2  VN5 34 
VN5 H3  H3  H 0 1 N N N -16.150 -28.250 7.079  -3.837 3.724  0.279  H3  VN5 35 
VN5 H4  H4  H 0 1 N N N -14.245 -29.301 5.898  -6.076 3.217  1.165  H4  VN5 36 
VN5 H5  H5  H 0 1 N N N -12.615 -30.615 9.625  -5.465 -0.928 0.320  H5  VN5 37 
VN5 H6  H6  H 0 1 N N N -14.541 -29.617 10.817 -3.228 -0.412 -0.568 H6  VN5 38 
VN5 H7  H7  H 0 1 N N N -15.344 -26.853 11.185 -2.275 4.199  -0.327 H7  VN5 39 
VN5 H8  H8  H 0 1 N N N -17.095 -26.458 11.220 -0.524 3.664  -0.549 H8  VN5 40 
VN5 H9  H9  H 0 1 N N N -17.656 -28.988 11.749 -1.142 2.546  -2.740 H9  VN5 41 
VN5 H10 H10 H 0 1 N N N -15.904 -29.383 11.714 -2.894 3.080  -2.518 H10 VN5 42 
VN5 H11 H11 H 0 1 N N N -10.590 -32.015 7.068  -6.864 -1.133 1.865  H11 VN5 43 
VN5 H12 H12 H 0 1 N N N -10.923 -31.155 8.609  -8.560 -0.625 1.686  H12 VN5 44 
VN5 H13 H13 H 0 1 N N N -12.007 -32.482 8.069  -7.558 -0.904 0.242  H13 VN5 45 
VN5 H14 H14 H 0 1 N N N -21.856 -23.349 9.281  4.708  1.904  -0.651 H14 VN5 46 
VN5 H15 H15 H 0 1 N N N -20.370 -23.188 8.284  5.348  0.444  -1.442 H15 VN5 47 
VN5 H16 H16 H 0 1 N N N -21.065 -21.236 7.296  7.163  2.069  -1.037 H16 VN5 48 
VN5 H17 H17 H 0 1 N N N -21.864 -21.085 8.898  6.768  2.093  0.699  H17 VN5 49 
VN5 H18 H18 H 0 1 N N N -23.200 -22.574 5.478  7.114  0.067  2.030  H18 VN5 50 
VN5 H19 H19 H 0 1 N N N -24.781 -22.434 6.319  7.754  -1.393 1.238  H19 VN5 51 
VN5 H20 H20 H 0 1 N N N -23.945 -23.942 8.133  5.693  -1.582 -0.112 H20 VN5 52 
VN5 H21 H21 H 0 1 N N N -23.851 -24.745 6.529  5.298  -1.559 1.624  H21 VN5 53 
VN5 H22 H22 H 0 1 N N N -22.658 -19.414 7.128  9.639  -0.198 0.324  H22 VN5 54 
VN5 H23 H23 H 0 1 N N N -22.381 -20.378 5.638  9.372  1.303  -0.595 H23 VN5 55 
VN5 H24 H24 H 0 1 N N N -24.053 -19.930 6.121  9.085  1.272  1.162  H24 VN5 56 
VN5 H25 H25 H 0 1 N N N -20.171 -32.611 7.372  -2.881 -2.509 0.219  H25 VN5 57 
VN5 H26 H26 H 0 1 N N N -18.673 -31.621 7.325  -2.566 -2.590 -1.531 H26 VN5 58 
VN5 H27 H27 H 0 1 N N N -22.371 -28.747 7.150  1.624  -2.959 0.148  H27 VN5 59 
VN5 H28 H28 H 0 1 N N N -20.881 -30.508 7.104  -0.204 -3.322 -0.166 H28 VN5 60 
VN5 H30 H30 H 0 1 N N N -18.917 -33.392 9.244  -1.807 -4.938 -1.286 H30 VN5 61 
VN5 H31 H31 H 0 1 N N N -18.381 -31.737 9.692  -2.122 -4.857 0.464  H31 VN5 62 
VN5 H32 H32 H 0 1 N N N -20.141 -32.522 11.098 -4.161 -4.437 -1.623 H32 VN5 63 
VN5 H33 H33 H 0 1 N N N -20.650 -31.237 10.229 -3.972 -5.827 -0.730 H33 VN5 64 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
VN5 C27 C28 SING N N 1  
VN5 C27 N26 SING N N 2  
VN5 C29 N26 SING N N 3  
VN5 C15 C14 DOUB Y N 4  
VN5 C15 C16 SING Y N 5  
VN5 O21 C16 SING N N 6  
VN5 O21 C22 SING N N 7  
VN5 C28 N23 SING N N 8  
VN5 C1  C6  DOUB Y N 9  
VN5 C1  C2  SING Y N 10 
VN5 N26 C25 SING N N 11 
VN5 N23 C2  SING N N 12 
VN5 N23 C24 SING N N 13 
VN5 C6  C5  SING Y N 14 
VN5 C2  C3  DOUB Y N 15 
VN5 C14 C13 SING Y N 16 
VN5 C16 C17 DOUB Y N 17 
VN5 C30 N9  SING N N 18 
VN5 C30 C31 SING N N 19 
VN5 C25 C24 SING N N 20 
VN5 N9  C7  SING N N 21 
VN5 C5  C7  DOUB Y N 22 
VN5 C5  C4  SING Y N 23 
VN5 C3  C4  SING Y N 24 
VN5 C7  N8  SING Y N 25 
VN5 C4  N10 DOUB Y N 26 
VN5 N8  C11 DOUB Y N 27 
VN5 N10 C11 SING Y N 28 
VN5 C13 C18 DOUB Y N 29 
VN5 C13 C12 SING N N 30 
VN5 C17 C18 SING Y N 31 
VN5 C11 C12 SING N N 32 
VN5 C31 N32 SING N N 33 
VN5 C12 C19 SING N N 34 
VN5 C12 C20 SING N N 35 
VN5 C19 C20 SING N N 36 
VN5 C1  H1  SING N N 37 
VN5 C3  H2  SING N N 38 
VN5 C14 H3  SING N N 39 
VN5 C15 H4  SING N N 40 
VN5 C17 H5  SING N N 41 
VN5 C18 H6  SING N N 42 
VN5 C19 H7  SING N N 43 
VN5 C19 H8  SING N N 44 
VN5 C20 H9  SING N N 45 
VN5 C20 H10 SING N N 46 
VN5 C22 H11 SING N N 47 
VN5 C22 H12 SING N N 48 
VN5 C22 H13 SING N N 49 
VN5 C24 H14 SING N N 50 
VN5 C24 H15 SING N N 51 
VN5 C25 H16 SING N N 52 
VN5 C25 H17 SING N N 53 
VN5 C27 H18 SING N N 54 
VN5 C27 H19 SING N N 55 
VN5 C28 H20 SING N N 56 
VN5 C28 H21 SING N N 57 
VN5 C29 H22 SING N N 58 
VN5 C29 H23 SING N N 59 
VN5 C29 H24 SING N N 60 
VN5 C30 H25 SING N N 61 
VN5 C30 H26 SING N N 62 
VN5 C6  H27 SING N N 63 
VN5 N9  H28 SING N N 64 
VN5 C31 H30 SING N N 65 
VN5 C31 H31 SING N N 66 
VN5 N32 H32 SING N N 67 
VN5 N32 H33 SING N N 68 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
VN5 InChI            InChI                1.06  "InChI=1S/C25H32N6O/c1-30-13-15-31(16-14-30)19-5-8-21-22(17-19)28-24(29-23(21)27-12-11-26)25(9-10-25)18-3-6-20(32-2)7-4-18/h3-8,17H,9-16,26H2,1-2H3,(H,27,28,29)" 
VN5 InChIKey         InChI                1.06  XTLPTSDXAUSHCD-UHFFFAOYSA-N                                                                                                                                       
VN5 SMILES_CANONICAL CACTVS               3.385 "COc1ccc(cc1)C2(CC2)c3nc(NCCN)c4ccc(cc4n3)N5CCN(C)CC5"                                                                                                            
VN5 SMILES           CACTVS               3.385 "COc1ccc(cc1)C2(CC2)c3nc(NCCN)c4ccc(cc4n3)N5CCN(C)CC5"                                                                                                            
VN5 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CN1CCN(CC1)c2ccc3c(c2)nc(nc3NCCN)C4(CC4)c5ccc(cc5)OC"                                                                                                            
VN5 SMILES           "OpenEye OEToolkits" 2.0.7 "CN1CCN(CC1)c2ccc3c(c2)nc(nc3NCCN)C4(CC4)c5ccc(cc5)OC"                                                                                                            
# 
_pdbx_chem_comp_identifier.comp_id           VN5 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   2.0.7 
_pdbx_chem_comp_identifier.identifier        "~{N}'-[2-[1-(4-methoxyphenyl)cyclopropyl]-7-(4-methylpiperazin-1-yl)quinazolin-4-yl]ethane-1,2-diamine" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
VN5 "Create component" 2023-03-20 PDBE 
VN5 "Initial release"  2023-06-14 RCSB 
# 
