data_VJ5
#

_chem_comp.id                                   VJ5
_chem_comp.name                                 "2-chloranyl-4-[[1-methyl-2-oxidanylidene-4-[[(1R)-1-pyrimidin-2-ylethyl]amino]quinolin-6-yl]amino]pyridine-3-carbonitrile"
_chem_comp.type                                 non-polymer
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C22 H18 Cl N7 O"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        "2-Chloro-4-[[1-methyl-2-oxo-4-[[(1R)-1-pyrimidin-2-ylethyl]amino]quinolin-6-yl]amino]pyridine-3-carbonitrile; 135385752"
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2021-05-18
_chem_comp.pdbx_modified_date                   2021-12-03
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       431.878
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    VJ5
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       7OKL
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 PDBE
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
VJ5  C1   C1   C   0  1  N  N  R  23.317  -15.019  18.474  -3.111   1.872  -0.548  C1   VJ5   1  
VJ5  C2   C2   C   0  1  N  N  N  23.527  -12.577  18.690  -2.483  -0.483  -0.192  C2   VJ5   2  
VJ5  C3   C3   C   0  1  N  N  N  22.573  -12.479  19.663  -3.802  -0.801  -0.002  C3   VJ5   3  
VJ5  C4   C4   C   0  1  N  N  N  22.012  -11.219  20.088  -4.174  -2.125   0.267  C4   VJ5   4  
VJ5  C5   C5   C   0  1  N  N  N  22.048   -8.777  19.941  -3.720  -4.480   0.628  C5   VJ5   5  
VJ5  C6   C6   C   0  1  Y  N  N  23.655  -10.110  18.627  -1.922  -2.869   0.164  C6   VJ5   6  
VJ5  C10  C7   C   0  1  Y  N  N  26.470   -9.844  14.350   2.726  -0.957   0.173  C10  VJ5   7  
VJ5  C12  C8   C   0  1  Y  N  N  25.144   -8.895  12.599   2.618   0.967   1.589  C12  VJ5   8  
VJ5  C14  C9   C   0  1  Y  N  N  27.458  -10.088  13.371   4.054  -0.596  -0.131  C14  VJ5   9  
VJ5  C18  C10  C   0  1  Y  N  N  21.834  -15.072  17.970  -2.473   3.202  -0.236  C18  VJ5  10  
VJ5  N4   N1   N   0  1  N  N  N  29.624  -11.336  13.965   5.462  -2.019  -1.739  N4   VJ5  11  
VJ5  C15  C11  C   0  1  N  N  N  28.663  -10.785  13.720   4.839  -1.390  -1.028  C15  VJ5  12  
VJ5  C13  C12  C   0  1  Y  N  N  27.198   -9.667  12.070   4.589   0.551   0.460  C13  VJ5  13  
VJ5  CL   CL1  CL  0  0  N  N  N  28.433   -9.862  10.871   6.222   1.020   0.105  CL   VJ5  14  
VJ5  N3   N2   N   0  1  Y  N  N  26.083   -9.091  11.672   3.865   1.280   1.285  N3   VJ5  15  
VJ5  C11  C13  C   0  1  Y  N  N  25.287   -9.236  13.930   2.008  -0.144   1.048  C11  VJ5  16  
VJ5  N2   N3   N   0  1  N  N  N  26.671  -10.183  15.686   2.148  -2.086  -0.388  N2   VJ5  17  
VJ5  C9   C14  C   0  1  Y  N  N  25.674  -10.171  16.697   0.784  -2.339  -0.204  C9   VJ5  18  
VJ5  C8   C15  C   0  1  Y  N  N  25.156   -8.956  17.134   0.348  -3.635   0.065  C8   VJ5  19  
VJ5  C7   C16  C   0  1  Y  N  N  24.154   -8.927  18.087  -0.991  -3.900   0.248  C7   VJ5  20  
VJ5  C16  C17  C   0  1  Y  N  N  25.193  -11.360  17.243  -0.127  -1.301  -0.291  C16  VJ5  21  
VJ5  C17  C18  C   0  1  Y  N  N  24.190  -11.343  18.219  -1.486  -1.561  -0.107  C17  VJ5  22  
VJ5  N1   N4   N   0  1  N  N  N  22.594  -10.073  19.542  -3.270  -3.115   0.346  N1   VJ5  23  
VJ5  O    O1   O   0  1  N  N  N  21.088  -11.113  20.882  -5.355  -2.386   0.434  O    VJ5  24  
VJ5  N    N5   N   0  1  N  N  N  23.939  -13.730  18.135  -2.101   0.814  -0.462  N    VJ5  25  
VJ5  C    C19  C   0  1  N  N  N  24.087  -16.152  17.801  -3.695   1.906  -1.961  C    VJ5  26  
VJ5  N6   N6   N   0  1  Y  N  N  21.560  -14.369  16.864  -1.313   3.501  -0.787  N6   VJ5  27  
VJ5  C21  C20  C   0  1  Y  N  N  20.277  -14.403  16.479  -0.723   4.659  -0.536  C21  VJ5  28  
VJ5  C20  C21  C   0  1  Y  N  N  19.306  -15.094  17.158  -1.341   5.560   0.316  C20  VJ5  29  
VJ5  C19  C22  C   0  1  Y  N  N  19.717  -15.776  18.276  -2.560   5.209   0.876  C19  VJ5  30  
VJ5  N5   N7   N   0  1  Y  N  N  20.984  -15.792  18.710  -3.092   4.036   0.575  N5   VJ5  31  
VJ5  H1   H1   H   0  1  N  N  N  23.327  -15.169  19.564  -3.907   1.674   0.170  H1   VJ5  32  
VJ5  H2   H2   H   0  1  N  N  N  22.223  -13.385  20.135  -4.555  -0.030  -0.058  H2   VJ5  33  
VJ5  H3   H3   H   0  1  N  N  N  21.228   -8.929  20.658  -3.728  -4.644   1.706  H3   VJ5  34  
VJ5  H4   H4   H   0  1  N  N  N  22.839   -8.175  20.411  -4.726  -4.620   0.232  H4   VJ5  35  
VJ5  H5   H5   H   0  1  N  N  N  21.666   -8.251  19.054  -3.041  -5.191   0.157  H5   VJ5  36  
VJ5  H6   H6   H   0  1  N  N  N  24.214   -8.441  12.290   2.063   1.599   2.267  H6   VJ5  37  
VJ5  H7   H7   H   0  1  N  N  N  24.494   -9.035  14.635   0.987  -0.387   1.306  H7   VJ5  38  
VJ5  H8   H8   H   0  1  N  N  N  27.594  -10.458  15.956   2.690  -2.701  -0.907  H8   VJ5  39  
VJ5  H9   H9   H   0  1  N  N  N  25.538   -8.031  16.727   1.066  -4.439   0.129  H9   VJ5  40  
VJ5  H10  H10  H   0  1  N  N  N  23.755   -7.979  18.415  -1.319  -4.907   0.457  H10  VJ5  41  
VJ5  H11  H11  H   0  1  N  N  N  25.598  -12.304  16.910   0.212  -0.297  -0.499  H11  VJ5  42  
VJ5  H12  H12  H   0  1  N  N  N  24.909  -13.819  18.360  -1.164   1.026  -0.594  H12  VJ5  43  
VJ5  H13  H13  H   0  1  N  N  N  25.134  -16.136  18.139  -2.899   2.104  -2.679  H13  VJ5  44  
VJ5  H14  H14  H   0  1  N  N  N  23.630  -17.116  18.069  -4.156   0.944  -2.187  H14  VJ5  45  
VJ5  H15  H15  H   0  1  N  N  N  24.053  -16.021  16.709  -4.446   2.693  -2.026  H15  VJ5  46  
VJ5  H16  H16  H   0  1  N  N  N  19.993  -13.859  15.590   0.227   4.898  -0.990  H16  VJ5  47  
VJ5  H17  H17  H   0  1  N  N  N  18.277  -15.101  16.832  -0.884   6.513   0.540  H17  VJ5  48  
VJ5  H18  H18  H   0  1  N  N  N  18.978  -16.330  18.836  -3.070   5.886   1.545  H18  VJ5  49  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
VJ5  CL   C13  SING  N  N   1  
VJ5  N3   C13  DOUB  Y  N   2  
VJ5  N3   C12  SING  Y  N   3  
VJ5  C13  C14  SING  Y  N   4  
VJ5  C12  C11  DOUB  Y  N   5  
VJ5  C14  C15  SING  N  N   6  
VJ5  C14  C10  DOUB  Y  N   7  
VJ5  C15  N4   TRIP  N  N   8  
VJ5  C11  C10  SING  Y  N   9  
VJ5  C10  N2   SING  N  N  10  
VJ5  N2   C9   SING  N  N  11  
VJ5  C21  N6   DOUB  Y  N  12  
VJ5  C21  C20  SING  Y  N  13  
VJ5  C9   C8   SING  Y  N  14  
VJ5  C9   C16  DOUB  Y  N  15  
VJ5  N6   C18  SING  Y  N  16  
VJ5  C8   C7   DOUB  Y  N  17  
VJ5  C20  C19  DOUB  Y  N  18  
VJ5  C16  C17  SING  Y  N  19  
VJ5  C    C1   SING  N  N  20  
VJ5  C18  C1   SING  N  N  21  
VJ5  C18  N5   DOUB  Y  N  22  
VJ5  C7   C6   SING  Y  N  23  
VJ5  N    C1   SING  N  N  24  
VJ5  N    C2   SING  N  N  25  
VJ5  C17  C6   DOUB  Y  N  26  
VJ5  C17  C2   SING  N  N  27  
VJ5  C19  N5   SING  Y  N  28  
VJ5  C6   N1   SING  N  N  29  
VJ5  C2   C3   DOUB  N  N  30  
VJ5  N1   C5   SING  N  N  31  
VJ5  N1   C4   SING  N  N  32  
VJ5  C3   C4   SING  N  N  33  
VJ5  C4   O    DOUB  N  N  34  
VJ5  C1   H1   SING  N  N  35  
VJ5  C3   H2   SING  N  N  36  
VJ5  C5   H3   SING  N  N  37  
VJ5  C5   H4   SING  N  N  38  
VJ5  C5   H5   SING  N  N  39  
VJ5  C12  H6   SING  N  N  40  
VJ5  C11  H7   SING  N  N  41  
VJ5  N2   H8   SING  N  N  42  
VJ5  C8   H9   SING  N  N  43  
VJ5  C7   H10  SING  N  N  44  
VJ5  C16  H11  SING  N  N  45  
VJ5  N    H12  SING  N  N  46  
VJ5  C    H13  SING  N  N  47  
VJ5  C    H14  SING  N  N  48  
VJ5  C    H15  SING  N  N  49  
VJ5  C21  H16  SING  N  N  50  
VJ5  C20  H17  SING  N  N  51  
VJ5  C19  H18  SING  N  N  52  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
VJ5  InChI             InChI                 1.03   "InChI=1S/C22H18ClN7O/c1-13(22-26-7-3-8-27-22)28-18-11-20(31)30(2)19-5-4-14(10-15(18)19)29-17-6-9-25-21(23)16(17)12-24/h3-11,13,28H,1-2H3,(H,25,29)/t13-/m1/s1"  
VJ5  InChIKey          InChI                 1.03   NZWNGZWURJFQPT-CYBMUJFWSA-N  
VJ5  SMILES_CANONICAL  CACTVS                3.385  "C[C@@H](NC1=CC(=O)N(C)c2ccc(Nc3ccnc(Cl)c3C#N)cc12)c4ncccn4"  
VJ5  SMILES            CACTVS                3.385  "C[CH](NC1=CC(=O)N(C)c2ccc(Nc3ccnc(Cl)c3C#N)cc12)c4ncccn4"  
VJ5  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.7  "C[C@H](c1ncccn1)NC2=CC(=O)N(c3c2cc(cc3)Nc4ccnc(c4C#N)Cl)C"  
VJ5  SMILES            "OpenEye OEToolkits"  2.0.7  "CC(c1ncccn1)NC2=CC(=O)N(c3c2cc(cc3)Nc4ccnc(c4C#N)Cl)C"  
#
_pdbx_chem_comp_identifier.comp_id          VJ5
_pdbx_chem_comp_identifier.type             "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program          "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version  2.0.7
_pdbx_chem_comp_identifier.identifier       "2-chloranyl-4-[[1-methyl-2-oxidanylidene-4-[[(1~{R})-1-pyrimidin-2-ylethyl]amino]quinolin-6-yl]amino]pyridine-3-carbonitrile"
#   #
loop_
_pdbx_chem_comp_synonyms.ordinal
_pdbx_chem_comp_synonyms.comp_id
_pdbx_chem_comp_synonyms.name
_pdbx_chem_comp_synonyms.provenance
_pdbx_chem_comp_synonyms.type
1  VJ5  "2-Chloro-4-[[1-methyl-2-oxo-4-[[(1R)-1-pyrimidin-2-ylethyl]amino]quinolin-6-yl]amino]pyridine-3-carbonitrile"  PUBCHEM  ?  
2  VJ5  135385752                                                                                                       PUBCHEM  ?  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
VJ5  "Create component"  2021-05-18  PDBE  
VJ5  "Initial release"   2021-12-08  RCSB  
##
