data_TX5
#

_chem_comp.id                                   TX5
_chem_comp.name                                 "(1R,3R)-5-((Z)-2-((1R,7AS)-HEXAHYDRO-1-((S)-6-HYDROXY-6-METHYLHEPT-4-YN-2-YL)-7A-METHYL-1H-INDEN-4(7AH)-YLIDENE)ETHYLIDENE)CYCLOHEXANE-1,3-DIOL"
_chem_comp.type                                 non-polymer
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C26 H40 O3"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        "19-NOR-14-EPI-23-YNE-1,25 DIHYDROXYVITAMIN D3; TX522"
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2004-07-12
_chem_comp.pdbx_modified_date                   2021-03-13
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       400.594
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    TX5
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       1TXI
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 PDBJ
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
TX5  O2   O1   O  0  1  N  N  N  17.087  17.960  34.698  -7.516   1.490  -0.518  O2   TX5   1  
TX5  C1   C1   C  0  1  N  N  R  14.133  17.808  35.719  -4.043   2.726   0.219  C1   TX5   2  
TX5  C2   C2   C  0  1  N  N  N  14.866  16.711  34.799  -5.572   2.744   0.182  C2   TX5   3  
TX5  C3   C3   C  0  1  N  N  R  16.025  17.399  33.864  -6.092   1.433  -0.410  C3   TX5   4  
TX5  C4   C4   C  0  1  N  N  N  15.313  18.541  32.971  -5.695   0.269   0.504  C4   TX5   5  
TX5  C5   C5   C  0  1  N  N  N  14.827  19.640  33.942  -4.197   0.309   0.710  C5   TX5   6  
TX5  C6   C6   C  0  1  N  N  N  14.596  20.954  33.683  -3.452  -0.772   0.505  C6   TX5   7  
TX5  C7   C7   C  0  1  N  N  N  13.866  22.081  34.381  -1.987  -0.685   0.607  C7   TX5   8  
TX5  C8   C8   C  0  1  N  N  N  13.809  23.275  33.909  -1.236  -1.737   0.297  C8   TX5   9  
TX5  C9   C9   C  0  1  N  N  N  14.440  23.845  32.570  -1.874  -2.972  -0.297  C9   TX5  10  
TX5  C10  C10  C  0  1  N  N  N  13.573  18.900  34.717  -3.569   1.611   1.156  C10  TX5  11  
TX5  C11  C11  C  0  1  N  N  N  13.440  24.674  31.660  -1.071  -3.348  -1.550  C11  TX5  12  
TX5  C12  C12  C  0  1  N  N  N  12.555  25.690  32.486   0.384  -3.572  -1.145  C12  TX5  13  
TX5  C13  C13  C  0  1  N  N  R  11.859  25.090  33.781   1.026  -2.272  -0.660  C13  TX5  14  
TX5  C14  C14  C  0  1  N  N  R  13.059  24.227  34.721   0.242  -1.695   0.531  C14  TX5  15  
TX5  C15  C15  C  0  1  N  N  N  13.051  24.701  36.176   0.653  -2.612   1.700  C15  TX5  16  
TX5  C16  C16  C  0  1  N  N  N  11.648  25.301  36.381   2.156  -2.872   1.449  C16  TX5  17  
TX5  C17  C17  C  0  1  N  N  R  11.328  26.029  35.038   2.398  -2.641  -0.042  C17  TX5  18  
TX5  C18  C18  C  0  1  N  N  N  10.803  23.931  33.364   1.151  -1.252  -1.794  C18  TX5  19  
TX5  C20  C19  C  0  1  N  N  R   9.722  26.399  34.839   3.388  -1.490  -0.235  C20  TX5  20  
TX5  C21  C20  C  0  1  N  N  N   9.571  27.805  35.508   4.774  -1.923   0.244  C21  TX5  21  
TX5  C22  C21  C  0  1  N  N  N   8.630  25.475  35.593   2.924  -0.278   0.576  C22  TX5  22  
TX5  O1   O2   O  0  1  N  N  N  13.111  17.074  36.485  -3.538   2.490  -1.097  O1   TX5  23  
TX5  C23  C22  C  0  1  N  N  N   7.252  25.523  35.099   3.832   0.854   0.329  C23  TX5  24  
TX5  C24  C23  C  0  1  N  N  N   6.175  25.602  34.738   4.556   1.757   0.132  C24  TX5  25  
TX5  C25  C24  C  0  1  N  N  N   4.815  25.770  34.317   5.464   2.889  -0.115  C25  TX5  26  
TX5  C27  C25  C  0  1  N  N  N   3.917  24.579  34.740   5.000   4.101   0.696  C27  TX5  27  
TX5  C26  C26  C  0  1  N  N  N   4.781  25.954  32.795   6.883   2.506   0.308  C26  TX5  28  
TX5  O3   O3   O  0  1  N  N  N   4.402  26.947  34.981   5.452   3.214  -1.506  O3   TX5  29  
TX5  H1   H1   H  0  1  N  N  N  17.487  17.267  35.211  -7.915   0.690  -0.887  H1   TX5  30  
TX5  H2   H2   H  0  1  N  N  N  14.873  18.270  36.389  -3.677   3.687   0.581  H2   TX5  31  
TX5  H3   H3   H  0  1  N  N  N  14.119  16.231  34.149  -5.958   2.862   1.195  H3   TX5  32  
TX5  H4   H4   H  0  1  N  N  N  15.331  15.953  35.446  -5.911   3.577  -0.433  H4   TX5  33  
TX5  H5   H5   H  0  1  N  N  N  16.428  16.628  33.191  -5.658   1.283  -1.399  H5   TX5  34  
TX5  H6   H6   H  0  1  N  N  N  16.033  18.963  32.254  -6.200   0.369   1.465  H6   TX5  35  
TX5  H7   H7   H  0  1  N  N  N  14.458  18.115  32.425  -5.975  -0.675   0.037  H7   TX5  36  
TX5  H9   H9   H  0  1  N  N  N  15.042  21.271  32.752  -3.921  -1.714   0.264  H9   TX5  37  
TX5  H11  H11  H  0  1  N  N  N  13.371  21.873  35.318  -1.521   0.233   0.933  H11  TX5  38  
TX5  H12  H12  H  0  1  N  N  N  14.814  22.995  31.980  -1.841  -3.789   0.424  H12  TX5  39  
TX5  H13  H13  H  0  1  N  N  N  15.280  24.502  32.841  -2.908  -2.760  -0.569  H13  TX5  40  
TX5  H14  H14  H  0  1  N  N  N  12.997  19.650  35.279  -2.483   1.529   1.108  H14  TX5  41  
TX5  H15  H15  H  0  1  N  N  N  12.920  18.416  33.976  -3.877   1.836   2.177  H15  TX5  42  
TX5  H16  H16  H  0  1  N  N  N  12.773  23.970  31.140  -1.476  -4.262  -1.983  H16  TX5  43  
TX5  H17  H17  H  0  1  N  N  N  14.025  25.240  30.920  -1.128  -2.538  -2.277  H17  TX5  44  
TX5  H18  H18  H  0  1  N  N  N  13.200  26.523  32.802   0.423  -4.311  -0.345  H18  TX5  45  
TX5  H19  H19  H  0  1  N  N  N  11.765  26.070  31.821   0.940  -3.947  -2.004  H19  TX5  46  
TX5  H20  H20  H  0  1  N  N  N  12.319  23.449  34.963   0.558  -0.670   0.722  H20  TX5  47  
TX5  H21  H21  H  0  1  N  N  N  13.216  23.856  36.861   0.506  -2.106   2.654  H21  TX5  48  
TX5  H22  H22  H  0  1  N  N  N  13.827  25.463  36.340   0.093  -3.546   1.670  H22  TX5  49  
TX5  H23  H23  H  0  1  N  N  N  11.650  26.015  37.218   2.758  -2.180   2.037  H23  TX5  50  
TX5  H24  H24  H  0  1  N  N  N  10.912  24.508  36.577   2.405  -3.900   1.713  H24  TX5  51  
TX5  H25  H25  H  0  1  N  N  N  11.891  26.973  35.007   2.785  -3.549  -0.506  H25  TX5  52  
TX5  H26  H26  H  0  1  N  N  N  10.328  23.524  34.269   0.174  -1.098  -2.253  H26  TX5  53  
TX5  H27  H27  H  0  1  N  N  N  10.032  24.357  32.706   1.517  -0.306  -1.393  H27  TX5  54  
TX5  H28  H28  H  0  1  N  N  N  11.333  23.126  32.834   1.850  -1.624  -2.542  H28  TX5  55  
TX5  H29  H29  H  0  1  N  N  N   9.490  26.454  33.765   3.435  -1.224  -1.291  H29  TX5  56  
TX5  H30  H30  H  0  1  N  N  N   8.527  28.140  35.426   5.142  -2.731  -0.389  H30  TX5  57  
TX5  H31  H31  H  0  1  N  N  N   9.852  27.738  36.569   5.459  -1.077   0.188  H31  TX5  58  
TX5  H32  H32  H  0  1  N  N  N  10.228  28.525  34.999   4.710  -2.271   1.276  H32  TX5  59  
TX5  H33  H33  H  0  1  N  N  N   8.972  24.432  35.518   1.912  -0.005   0.275  H33  TX5  60  
TX5  H34  H34  H  0  1  N  N  N   8.613  25.780  36.650   2.933  -0.526   1.638  H34  TX5  61  
TX5  H35  H35  H  0  1  N  N  N  13.535  16.444  37.056  -2.573   2.466  -1.149  H35  TX5  62  
TX5  H36  H36  H  0  1  N  N  N   3.953  24.462  35.833   5.009   3.853   1.758  H36  TX5  63  
TX5  H37  H37  H  0  1  N  N  N   2.880  24.772  34.426   5.672   4.939   0.513  H37  TX5  64  
TX5  H38  H38  H  0  1  N  N  N   4.280  23.658  34.260   3.988   4.374   0.395  H38  TX5  65  
TX5  H39  H39  H  0  1  N  N  N   3.740  26.084  32.464   7.214   1.643  -0.270  H39  TX5  66  
TX5  H40  H40  H  0  1  N  N  N   5.367  26.844  32.520   7.556   3.344   0.125  H40  TX5  67  
TX5  H41  H41  H  0  1  N  N  N   5.212  25.067  32.309   6.892   2.258   1.369  H41  TX5  68  
TX5  H42  H42  H  0  1  N  N  N   4.432  26.808  35.920   6.029   3.954  -1.742  H42  TX5  69  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
TX5  C11  C12  SING  N  N   1  
TX5  C11  C9   SING  N  N   2  
TX5  C12  C13  SING  N  N   3  
TX5  C9   C8   SING  N  N   4  
TX5  C26  C25  SING  N  N   5  
TX5  C4   C3   SING  N  N   6  
TX5  C4   C5   SING  N  N   7  
TX5  C18  C13  SING  N  N   8  
TX5  C6   C5   DOUB  N  N   9  
TX5  C6   C7   SING  N  N  10  
TX5  C13  C14  SING  N  N  11  
TX5  C13  C17  SING  N  N  12  
TX5  C3   O2   SING  N  N  13  
TX5  C3   C2   SING  N  N  14  
TX5  C8   C7   DOUB  N  E  15  
TX5  C8   C14  SING  N  N  16  
TX5  C5   C10  SING  N  N  17  
TX5  C25  C24  SING  N  N  18  
TX5  C25  C27  SING  N  N  19  
TX5  C25  O3   SING  N  N  20  
TX5  C10  C1   SING  N  N  21  
TX5  C14  C15  SING  N  N  22  
TX5  C24  C23  TRIP  N  N  23  
TX5  C2   C1   SING  N  N  24  
TX5  C20  C17  SING  N  N  25  
TX5  C20  C21  SING  N  N  26  
TX5  C20  C22  SING  N  N  27  
TX5  C17  C16  SING  N  N  28  
TX5  C23  C22  SING  N  N  29  
TX5  C1   O1   SING  N  N  30  
TX5  C15  C16  SING  N  N  31  
TX5  O2   H1   SING  N  N  32  
TX5  C1   H2   SING  N  N  33  
TX5  C2   H3   SING  N  N  34  
TX5  C2   H4   SING  N  N  35  
TX5  C3   H5   SING  N  N  36  
TX5  C4   H6   SING  N  N  37  
TX5  C4   H7   SING  N  N  38  
TX5  C6   H9   SING  N  N  39  
TX5  C7   H11  SING  N  N  40  
TX5  C9   H12  SING  N  N  41  
TX5  C9   H13  SING  N  N  42  
TX5  C10  H14  SING  N  N  43  
TX5  C10  H15  SING  N  N  44  
TX5  C11  H16  SING  N  N  45  
TX5  C11  H17  SING  N  N  46  
TX5  C12  H18  SING  N  N  47  
TX5  C12  H19  SING  N  N  48  
TX5  C14  H20  SING  N  N  49  
TX5  C15  H21  SING  N  N  50  
TX5  C15  H22  SING  N  N  51  
TX5  C16  H23  SING  N  N  52  
TX5  C16  H24  SING  N  N  53  
TX5  C17  H25  SING  N  N  54  
TX5  C18  H26  SING  N  N  55  
TX5  C18  H27  SING  N  N  56  
TX5  C18  H28  SING  N  N  57  
TX5  C20  H29  SING  N  N  58  
TX5  C21  H30  SING  N  N  59  
TX5  C21  H31  SING  N  N  60  
TX5  C21  H32  SING  N  N  61  
TX5  C22  H33  SING  N  N  62  
TX5  C22  H34  SING  N  N  63  
TX5  O1   H35  SING  N  N  64  
TX5  C27  H36  SING  N  N  65  
TX5  C27  H37  SING  N  N  66  
TX5  C27  H38  SING  N  N  67  
TX5  C26  H39  SING  N  N  68  
TX5  C26  H40  SING  N  N  69  
TX5  C26  H41  SING  N  N  70  
TX5  O3   H42  SING  N  N  71  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
TX5  InChI             InChI                 1.03   "InChI=1S/C26H40O3/c1-18(7-5-13-25(2,3)29)23-11-12-24-20(8-6-14-26(23,24)4)10-9-19-15-21(27)17-22(28)16-19/h9-10,18,21-24,27-29H,6-8,11-12,14-17H2,1-4H3/b20-10+/t18-,21-,22-,23-,24?,26-/m1/s1"  
TX5  InChIKey          InChI                 1.03   HHGRMHMXKPQNGF-XHJOVPLKSA-N  
TX5  SMILES_CANONICAL  CACTVS                3.385  "C[C@H](CC#CC(C)(C)O)[C@H]1CC[C@@H]2C(/CCC[C@]12C)=C/[CH]=[C@@]3C[C@@H](O)[CH2][C@H](O)C3"  
TX5  SMILES            CACTVS                3.385  "C[CH](CC#CC(C)(C)O)[CH]1CC[CH]2C(CCC[C]12C)=C[CH]=[C]3C[CH](O)[CH2][CH](O)C3"  
TX5  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.7  "C[C@H](CC#CC(C)(C)O)[C@H]1CCC\2[C@@]1(CCC/C2=C\C=C3C[C@H](C[C@@H](C3)O)O)C"  
TX5  SMILES            "OpenEye OEToolkits"  2.0.7  "CC(CC#CC(C)(C)O)C1CCC2C1(CCCC2=CC=C3CC(CC(C3)O)O)C"  
#
_pdbx_chem_comp_identifier.comp_id          TX5
_pdbx_chem_comp_identifier.type             "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program          "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version  2.0.7
_pdbx_chem_comp_identifier.identifier       "(1~{R},3~{R})-5-[(2~{E})-2-[(1~{R},7~{a}~{R})-7~{a}-methyl-1-[(2~{R})-6-methyl-6-oxidanyl-hept-4-yn-2-yl]-2,3,3~{a},5,6,7-hexahydro-1~{H}-inden-4-ylidene]ethylidene]cyclohexane-1,3-diol"
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
TX5  "Create component"   2004-07-12  RCSB  
TX5  "Modify descriptor"  2011-06-04  RCSB  
TX5  "Modify synonyms"    2020-05-27  PDBE  
TX5  "Modify synonyms"    2021-03-13  RCSB  
#   #
loop_
_pdbx_chem_comp_synonyms.ordinal
_pdbx_chem_comp_synonyms.comp_id
_pdbx_chem_comp_synonyms.name
_pdbx_chem_comp_synonyms.provenance
_pdbx_chem_comp_synonyms.type
1  TX5  "19-NOR-14-EPI-23-YNE-1,25 DIHYDROXYVITAMIN D3"  PDB  ?  
2  TX5  TX522                                            PDB  ?  
##
