data_TR5
#

_chem_comp.id                                   TR5
_chem_comp.name                                 "5-methyl-1-(5-O-phosphono-beta-D-ribofuranosyl)-1,5-dihydro-1,4,5,6,8-pentaazaacenaphthylen-3-amine"
_chem_comp.type                                 NON-POLYMER
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C13 H17 N6 O7 P"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        "Triciribine phosphate"
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2012-07-13
_chem_comp.pdbx_modified_date                   2020-06-17
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       400.284
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    TR5
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       4FYH
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
TR5  O2     O2   O  0  1  N  N  N  15.713  38.862   5.576  -6.343  -0.568  -0.365  O2   TR5   1  
TR5  PB     PB   P  0  1  N  N  N  17.102  39.384   6.163  -5.187  -1.302   0.196  PB   TR5   2  
TR5  O3     O3   O  0  1  N  N  N  16.936  39.768   7.577  -5.636  -2.064   1.541  O3   TR5   3  
TR5  O1     O1   O  0  1  N  N  N  18.145  38.400   5.795  -4.662  -2.379  -0.881  O1   TR5   4  
TR5  "O5'"  O5*  O  0  1  N  N  N  17.361  40.724   5.302  -4.005  -0.264   0.536  O5*  TR5   5  
TR5  "C5'"  C5*  C  0  1  N  N  N  17.114  40.739   3.894  -3.461   0.640  -0.428  C5*  TR5   6  
TR5  "C4'"  C4*  C  0  1  N  N  R  17.405  42.139   3.363  -2.361   1.480   0.224  C4*  TR5   7  
TR5  "O4'"  O4*  O  0  1  N  N  N  18.659  42.553   3.910  -1.249   0.640   0.577  O4*  TR5   8  
TR5  "C3'"  C3*  C  0  1  N  N  S  17.545  42.089   1.850  -1.841   2.530  -0.776  C3*  TR5   9  
TR5  "O3'"  O3*  O  0  1  N  N  N  16.655  43.049   1.247  -2.045   3.850  -0.267  O3*  TR5  10  
TR5  "C2'"  C2*  C  0  1  N  N  R  19.031  42.369   1.546  -0.329   2.222  -0.900  C2*  TR5  11  
TR5  "O2'"  O2*  O  0  1  N  N  N  19.194  43.566   0.763   0.437   3.428  -0.934  O2*  TR5  12  
TR5  "C1'"  C1*  C  0  1  N  N  R  19.735  42.464   2.936  -0.052   1.428   0.403  C1*  TR5  13  
TR5  N9     N9   N  0  1  Y  N  N  20.527  41.214   3.209   1.118   0.562   0.241  N9   TR5  14  
TR5  C8     C8   C  0  1  Y  N  N  20.299  40.297   4.166   1.062  -0.774  -0.122  C8   TR5  15  
TR5  C7     C7   C  0  1  Y  N  N  21.205  39.321   4.047   2.307  -1.284  -0.184  C7   TR5  16  
TR5  C5     C5   C  0  1  Y  N  N  21.969  39.654   3.019   3.172  -0.161   0.170  C5   TR5  17  
TR5  C4     C4   C  0  1  Y  N  N  21.580  40.810   2.489   2.409   0.963   0.420  C4   TR5  18  
TR5  N3     N3   N  0  1  Y  N  N  22.231  41.328   1.426   3.118   2.046   0.754  N3   TR5  19  
TR5  C2     C2   C  0  1  Y  N  N  23.392  40.614   0.827   4.435   1.976   0.820  C2   TR5  20  
TR5  N1     N1   N  0  1  Y  N  N  23.705  39.329   1.535   5.166   0.892   0.578  N1   TR5  21  
TR5  C6     C6   C  0  1  Y  N  N  22.985  38.905   2.594   4.552  -0.235   0.234  C6   TR5  22  
TR5  N61    N61  N  0  1  N  N  N  23.253  37.750   3.253   5.123  -1.449  -0.054  N61  TR5  23  
TR5  C62    C62  C  0  1  N  N  N  24.377  36.874   2.834   6.579  -1.597   0.004  C62  TR5  24  
TR5  N71    N71  N  0  1  N  N  N  22.513  37.396   4.273   4.327  -2.549  -0.402  N71  TR5  25  
TR5  C72    C72  C  0  1  N  N  N  21.480  38.169   4.685   3.020  -2.540  -0.478  C72  TR5  26  
TR5  N73    N73  N  0  1  N  N  N  20.709  37.842   5.726   2.320  -3.690  -0.829  N73  TR5  27  
TR5  H1     H1   H  0  1  N  N  N  16.035  39.623   7.841  -6.347  -2.707   1.410  H1   TR5  28  
TR5  H2     H2   H  0  1  N  N  N  17.752  37.691   5.299  -3.904  -2.898  -0.580  H2   TR5  29  
TR5  H3     H3   H  0  1  N  N  N  16.063  40.480   3.700  -3.041   0.074  -1.260  H3   TR5  30  
TR5  H4     H4   H  0  1  N  N  N  17.769  40.010   3.395  -4.249   1.296  -0.796  H4   TR5  31  
TR5  H5     H5   H  0  1  N  N  N  16.595  42.827   3.646  -2.750   1.973   1.115  H5   TR5  32  
TR5  H6     H6   H  0  1  N  N  N  17.299  41.075   1.501  -2.334   2.414  -1.742  H6   TR5  33  
TR5  H7     H7   H  0  1  N  N  N  15.757  42.830   1.466  -1.736   4.551  -0.857  H7   TR5  34  
TR5  H8     H8   H  0  1  N  N  N  19.447  41.506   1.005  -0.127   1.609  -1.778  H8   TR5  35  
TR5  H9     H9   H  0  1  N  N  N  20.117  43.710   0.593   0.233   4.002  -1.685  H9   TR5  36  
TR5  H10    H10  H  0  1  N  N  N  20.384  43.352   2.969   0.089   2.108   1.244  H10  TR5  37  
TR5  H11    H11  H  0  1  N  N  N  19.515  40.342   4.907   0.156  -1.325  -0.324  H11  TR5  38  
TR5  H12    H12  H  0  1  N  N  N  23.948  40.981  -0.023   4.964   2.876   1.094  H12  TR5  39  
TR5  H13    H13  H  0  1  N  N  N  24.422  35.994   3.493   6.874  -1.899   1.009  H13  TR5  40  
TR5  H14    H14  H  0  1  N  N  N  24.219  36.547   1.796   6.896  -2.355  -0.711  H14  TR5  41  
TR5  H15    H15  H  0  1  N  N  N  25.322  37.432   2.903   7.051  -0.646  -0.242  H15  TR5  42  
TR5  H16    H16  H  0  1  N  N  N  20.885  36.998   6.233   1.352  -3.670  -0.883  H16  TR5  43  
TR5  H17    H17  H  0  1  N  N  N  19.956  38.441   5.998   2.800  -4.510  -1.021  H17  TR5  44  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
TR5  "O2'"  "C2'"  SING  N  N   1  
TR5  C2     N3     DOUB  Y  N   2  
TR5  C2     N1     SING  Y  N   3  
TR5  "O3'"  "C3'"  SING  N  N   4  
TR5  N3     C4     SING  Y  N   5  
TR5  N1     C6     DOUB  Y  N   6  
TR5  "C2'"  "C3'"  SING  N  N   7  
TR5  "C2'"  "C1'"  SING  N  N   8  
TR5  "C3'"  "C4'"  SING  N  N   9  
TR5  C4     C5     DOUB  Y  N  10  
TR5  C4     N9     SING  Y  N  11  
TR5  C6     C5     SING  Y  N  12  
TR5  C6     N61    SING  N  N  13  
TR5  C62    N61    SING  N  N  14  
TR5  "C1'"  N9     SING  N  N  15  
TR5  "C1'"  "O4'"  SING  N  N  16  
TR5  C5     C7     SING  Y  N  17  
TR5  N9     C8     SING  Y  N  18  
TR5  N61    N71    SING  N  N  19  
TR5  "C4'"  "C5'"  SING  N  N  20  
TR5  "C4'"  "O4'"  SING  N  N  21  
TR5  "C5'"  "O5'"  SING  N  N  22  
TR5  C7     C8     DOUB  Y  N  23  
TR5  C7     C72    SING  N  N  24  
TR5  N71    C72    DOUB  N  N  25  
TR5  C72    N73    SING  N  N  26  
TR5  "O5'"  PB     SING  N  N  27  
TR5  O2     PB     DOUB  N  N  28  
TR5  O1     PB     SING  N  N  29  
TR5  PB     O3     SING  N  N  30  
TR5  O3     H1     SING  N  N  31  
TR5  O1     H2     SING  N  N  32  
TR5  "C5'"  H3     SING  N  N  33  
TR5  "C5'"  H4     SING  N  N  34  
TR5  "C4'"  H5     SING  N  N  35  
TR5  "C3'"  H6     SING  N  N  36  
TR5  "O3'"  H7     SING  N  N  37  
TR5  "C2'"  H8     SING  N  N  38  
TR5  "O2'"  H9     SING  N  N  39  
TR5  "C1'"  H10    SING  N  N  40  
TR5  C8     H11    SING  N  N  41  
TR5  C2     H12    SING  N  N  42  
TR5  C62    H13    SING  N  N  43  
TR5  C62    H14    SING  N  N  44  
TR5  C62    H15    SING  N  N  45  
TR5  N73    H16    SING  N  N  46  
TR5  N73    H17    SING  N  N  47  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
TR5  SMILES            ACDLabs               12.01  "O=P(O)(O)OCC4OC(n1cc2C(=NN(c3ncnc1c23)C)N)C(O)C4O"  
TR5  InChI             InChI                 1.03   "InChI=1S/C13H17N6O7P/c1-18-11-7-5(10(14)17-18)2-19(12(7)16-4-15-11)13-9(21)8(20)6(26-13)3-25-27(22,23)24/h2,4,6,8-9,13,20-21H,3H2,1H3,(H2,14,17)(H2,22,23,24)/t6-,8-,9-,13-/m1/s1"  
TR5  InChIKey          InChI                 1.03   URLYINUFLXOMHP-HTVVRFAVSA-N  
TR5  SMILES_CANONICAL  CACTVS                3.370  "CN1N=C(N)c2cn([C@@H]3O[C@H](CO[P](O)(O)=O)[C@@H](O)[C@H]3O)c4ncnc1c24"  
TR5  SMILES            CACTVS                3.370  "CN1N=C(N)c2cn([CH]3O[CH](CO[P](O)(O)=O)[CH](O)[CH]3O)c4ncnc1c24"  
TR5  SMILES_CANONICAL  "OpenEye OEToolkits"  1.7.6  "CN1c2c3c(cn(c3ncn2)[C@H]4[C@@H]([C@@H]([C@H](O4)COP(=O)(O)O)O)O)C(=N1)N"  
TR5  SMILES            "OpenEye OEToolkits"  1.7.6  "CN1c2c3c(cn(c3ncn2)C4C(C(C(O4)COP(=O)(O)O)O)O)C(=N1)N"  
#
_pdbx_chem_comp_identifier.comp_id          TR5
_pdbx_chem_comp_identifier.type             "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program          ACDLabs
_pdbx_chem_comp_identifier.program_version  12.01
_pdbx_chem_comp_identifier.identifier       "5-methyl-1-(5-O-phosphono-beta-D-ribofuranosyl)-1,5-dihydro-1,4,5,6,8-pentaazaacenaphthylen-3-amine"
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
TR5  "Create component"  2012-07-13  RCSB  
TR5  "Initial release"   2012-12-28  RCSB  
TR5  "Modify synonyms"   2020-06-05  PDBE  
#
_pdbx_chem_comp_synonyms.ordinal     1
_pdbx_chem_comp_synonyms.comp_id     TR5
_pdbx_chem_comp_synonyms.name        "Triciribine phosphate"
_pdbx_chem_comp_synonyms.provenance  ?
_pdbx_chem_comp_synonyms.type        ?
##
