data_QD5
#

_chem_comp.id                                   QD5
_chem_comp.name                                 "~{N}5-cyclopropyl-1-(1~{H}-indol-4-ylmethyl)-~{N}3-methyl-2-oxidanylidene-pyridine-3,5-dicarboxamide"
_chem_comp.type                                 non-polymer
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C20 H20 N4 O3"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        ?
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2020-06-08
_chem_comp.pdbx_modified_date                   2020-07-31
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       364.398
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    QD5
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       6ZB2
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 PDBE
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
QD5  C10  C1   C  0  1  N  N  N  43.365  16.776   7.998   1.871   0.917  -0.049  C10  QD5   1  
QD5  C13  C2   C  0  1  N  N  N  42.945  18.472   9.662   0.277  -0.573  -1.093  C13  QD5   2  
QD5  C20  C3   C  0  1  Y  N  N  39.338  17.561  11.075  -3.813   0.758  -0.278  C20  QD5   3  
QD5  C22  C4   C  0  1  Y  N  N  38.929  16.758  12.124  -4.734   0.469   0.720  C22  QD5   4  
QD5  C24  C5   C  0  1  Y  N  N  39.444  16.945  13.391  -4.776  -0.781   1.296  C24  QD5   5  
QD5  C26  C6   C  0  1  Y  N  N  40.381  17.952  13.587  -3.888  -1.766   0.876  C26  QD5   6  
QD5  C01  C7   C  0  1  N  N  N  39.735  14.979   5.211   0.579   5.550   0.980  C01  QD5   7  
QD5  N05  N1   N  0  1  N  N  N  40.303  15.892   6.185   0.299   4.243   0.380  N05  QD5   8  
QD5  C07  C8   C  0  1  N  N  N  41.589  15.862   6.509   1.252   3.291   0.364  C07  QD5   9  
QD5  O08  O1   O  0  1  N  N  N  42.344  15.010   6.039   2.373   3.545   0.763  O08  QD5  10  
QD5  C09  C9   C  0  1  N  N  N  42.062  16.805   7.580   0.937   1.943  -0.135  C09  QD5  11  
QD5  C12  C10  C  0  1  N  N  N  43.835  17.635   9.079   1.525  -0.356  -0.541  C12  QD5  12  
QD5  N15  N2   N  0  1  N  N  N  41.637  18.554   9.279  -0.632   0.411  -1.186  N15  QD5  13  
QD5  C16  C11  C  0  1  N  N  N  40.718  19.412  10.048  -1.936   0.130  -1.790  C16  QD5  14  
QD5  C19  C12  C  0  1  Y  N  N  40.249  18.598  11.241  -2.932  -0.194  -0.706  C19  QD5  15  
QD5  N27  N3   N  0  1  Y  N  N  41.045  18.353  14.719  -3.683  -3.077   1.243  N27  QD5  16  
QD5  C29  C13  C  0  1  Y  N  N  41.873  19.401  14.402  -2.663  -3.613   0.504  C29  QD5  17  
QD5  C31  C14  C  0  1  Y  N  N  41.759  19.695  13.081  -2.182  -2.693  -0.346  C31  QD5  18  
QD5  C33  C15  C  0  1  Y  N  N  40.806  18.776  12.522  -2.957  -1.468  -0.136  C33  QD5  19  
QD5  C34  C16  C  0  1  N  N  N  41.106  17.730   8.283  -0.367   1.652  -0.735  C34  QD5  20  
QD5  O35  O2   O  0  1  N  N  N  39.929  17.817   7.973  -1.208   2.529  -0.826  O35  QD5  21  
QD5  C36  C17  C  0  1  N  N  N  45.225  17.685   9.582   2.498  -1.462  -0.468  C36  QD5  22  
QD5  O37  O3   O  0  1  N  N  N  45.601  18.695  10.179   2.201  -2.563  -0.892  O37  QD5  23  
QD5  N38  N4   N  0  1  N  N  N  46.049  16.639   9.428   3.717  -1.253   0.070  N38  QD5  24  
QD5  C40  C18  C  0  1  N  N  N  47.420  16.697   9.929   4.683  -2.352   0.143  C40  QD5  25  
QD5  C42  C19  C  0  1  N  N  N  48.295  15.545   9.664   5.469  -2.516   1.445  C42  QD5  26  
QD5  C45  C20  C  0  1  N  N  N  47.808  15.816  11.041   6.168  -1.985   0.192  C45  QD5  27  
QD5  H1   H1   H  0  1  N  N  N  44.060  16.103   7.517   2.845   1.094   0.383  H1   QD5  28  
QD5  H2   H2   H  0  1  N  N  N  43.286  19.105  10.468   0.029  -1.556  -1.466  H2   QD5  29  
QD5  H3   H3   H  0  1  N  N  N  38.935  17.376  10.090  -3.796   1.742  -0.723  H3   QD5  30  
QD5  H4   H4   H  0  1  N  N  N  38.201  15.979  11.951  -5.424   1.232   1.048  H4   QD5  31  
QD5  H5   H5   H  0  1  N  N  N  39.125  16.321  14.213  -5.495  -0.996   2.073  H5   QD5  32  
QD5  H6   H6   H  0  1  N  N  N  38.660  15.183   5.100   0.838   5.420   2.030  H6   QD5  33  
QD5  H7   H7   H  0  1  N  N  N  40.236  15.119   4.242   1.411   6.019   0.455  H7   QD5  34  
QD5  H8   H8   H  0  1  N  N  N  39.879  13.943   5.552  -0.305   6.184   0.899  H8   QD5  35  
QD5  H9   H9   H  0  1  N  N  N  39.707  16.564   6.625  -0.573   4.063  -0.006  H9   QD5  36  
QD5  H10  H10  H  0  1  N  N  N  41.242  20.317  10.390  -2.275   1.004  -2.346  H10  QD5  37  
QD5  H11  H11  H  0  1  N  N  N  39.858  19.700   9.425  -1.847  -0.719  -2.467  H11  QD5  38  
QD5  H12  H12  H  0  1  N  N  N  40.942  17.948  15.627  -4.186  -3.550   1.925  H12  QD5  39  
QD5  H13  H13  H  0  1  N  N  N  42.519  19.915  15.099  -2.299  -4.626   0.594  H13  QD5  40  
QD5  H14  H14  H  0  1  N  N  N  42.286  20.474  12.550  -1.376  -2.830  -1.052  H14  QD5  41  
QD5  H15  H15  H  0  1  N  N  N  45.723  15.814   8.967   3.953  -0.376   0.408  H15  QD5  42  
QD5  H16  H16  H  0  1  N  N  N  47.904  17.685   9.906   4.407  -3.258  -0.396  H16  QD5  43  
QD5  H17  H17  H  0  1  N  N  N  47.911  14.679   9.104   5.266  -1.807   2.248  H17  QD5  44  
QD5  H18  H18  H  0  1  N  N  N  49.354  15.704   9.413   5.709  -3.530   1.764  H18  QD5  45  
QD5  H19  H19  H  0  1  N  N  N  47.063  15.151  11.503   6.868  -2.649  -0.314  H19  QD5  46  
QD5  H20  H20  H  0  1  N  N  N  48.506  16.176  11.811   6.425  -0.926   0.171  H20  QD5  47  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
QD5  C01  N05  SING  N  N   1  
QD5  O08  C07  DOUB  N  N   2  
QD5  N05  C07  SING  N  N   3  
QD5  C07  C09  SING  N  N   4  
QD5  C09  C10  DOUB  N  N   5  
QD5  C09  C34  SING  N  N   6  
QD5  O35  C34  DOUB  N  N   7  
QD5  C10  C12  SING  N  N   8  
QD5  C34  N15  SING  N  N   9  
QD5  C12  C36  SING  N  N  10  
QD5  C12  C13  DOUB  N  N  11  
QD5  N15  C13  SING  N  N  12  
QD5  N15  C16  SING  N  N  13  
QD5  N38  C36  SING  N  N  14  
QD5  N38  C40  SING  N  N  15  
QD5  C36  O37  DOUB  N  N  16  
QD5  C42  C40  SING  N  N  17  
QD5  C42  C45  SING  N  N  18  
QD5  C40  C45  SING  N  N  19  
QD5  C16  C19  SING  N  N  20  
QD5  C20  C19  DOUB  Y  N  21  
QD5  C20  C22  SING  Y  N  22  
QD5  C19  C33  SING  Y  N  23  
QD5  C22  C24  DOUB  Y  N  24  
QD5  C33  C31  SING  Y  N  25  
QD5  C33  C26  DOUB  Y  N  26  
QD5  C31  C29  DOUB  Y  N  27  
QD5  C24  C26  SING  Y  N  28  
QD5  C26  N27  SING  Y  N  29  
QD5  C29  N27  SING  Y  N  30  
QD5  C10  H1   SING  N  N  31  
QD5  C13  H2   SING  N  N  32  
QD5  C20  H3   SING  N  N  33  
QD5  C22  H4   SING  N  N  34  
QD5  C24  H5   SING  N  N  35  
QD5  C01  H6   SING  N  N  36  
QD5  C01  H7   SING  N  N  37  
QD5  C01  H8   SING  N  N  38  
QD5  N05  H9   SING  N  N  39  
QD5  C16  H10  SING  N  N  40  
QD5  C16  H11  SING  N  N  41  
QD5  N27  H12  SING  N  N  42  
QD5  C29  H13  SING  N  N  43  
QD5  C31  H14  SING  N  N  44  
QD5  N38  H15  SING  N  N  45  
QD5  C40  H16  SING  N  N  46  
QD5  C42  H17  SING  N  N  47  
QD5  C42  H18  SING  N  N  48  
QD5  C45  H19  SING  N  N  49  
QD5  C45  H20  SING  N  N  50  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
QD5  InChI             InChI                 1.03   "InChI=1S/C20H20N4O3/c1-21-19(26)16-9-13(18(25)23-14-5-6-14)11-24(20(16)27)10-12-3-2-4-17-15(12)7-8-22-17/h2-4,7-9,11,14,22H,5-6,10H2,1H3,(H,21,26)(H,23,25)"  
QD5  InChIKey          InChI                 1.03   PDCBJZVPIGAEBL-UHFFFAOYSA-N  
QD5  SMILES_CANONICAL  CACTVS                3.385  "CNC(=O)C1=CC(=CN(Cc2cccc3[nH]ccc23)C1=O)C(=O)NC4CC4"  
QD5  SMILES            CACTVS                3.385  "CNC(=O)C1=CC(=CN(Cc2cccc3[nH]ccc23)C1=O)C(=O)NC4CC4"  
QD5  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.7  "CNC(=O)C1=CC(=CN(C1=O)Cc2cccc3c2cc[nH]3)C(=O)NC4CC4"  
QD5  SMILES            "OpenEye OEToolkits"  2.0.7  "CNC(=O)C1=CC(=CN(C1=O)Cc2cccc3c2cc[nH]3)C(=O)NC4CC4"  
#
_pdbx_chem_comp_identifier.comp_id          QD5
_pdbx_chem_comp_identifier.type             "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program          "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version  2.0.7
_pdbx_chem_comp_identifier.identifier       "~{N}5-cyclopropyl-1-(1~{H}-indol-4-ylmethyl)-~{N}3-methyl-2-oxidanylidene-pyridine-3,5-dicarboxamide"
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
QD5  "Create component"  2020-06-08  PDBE  
QD5  "Initial release"   2020-08-05  RCSB  
##
