data_PZ5
# 
_chem_comp.id                                    PZ5 
_chem_comp.name                                  5-hept-6-ynyl-6-phenyl-phenanthridin-5-ium-3,8-diamine 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C26 H26 N3" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    1 
_chem_comp.pdbx_initial_date                     2015-10-29 
_chem_comp.pdbx_modified_date                    2016-01-15 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        380.505 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     PZ5 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        5EIH 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  EBI 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
PZ5 C29 C1  C 0 1 N N N 43.297 22.463 0.298  -7.693 -0.152 2.183  C29 PZ5 1  
PZ5 C28 C2  C 0 1 N N N 42.367 22.263 1.157  -6.933 -0.174 1.289  C28 PZ5 2  
PZ5 C27 C3  C 0 1 N N N 41.299 22.008 2.143  -5.980 -0.202 0.168  C27 PZ5 3  
PZ5 C26 C4  C 0 1 N N N 40.085 22.923 1.943  -4.563 0.032  0.697  C26 PZ5 4  
PZ5 C25 C5  C 0 1 N N N 38.921 22.621 2.902  -3.572 0.003  -0.468 C25 PZ5 5  
PZ5 C21 C6  C 0 1 N N N 39.152 23.072 4.355  -2.156 0.237  0.061  C21 PZ5 6  
PZ5 C20 C7  C 0 1 N N N 38.735 24.523 4.617  -1.165 0.208  -1.105 C20 PZ5 7  
PZ5 N2  N1  N 1 1 Y N N 39.254 25.118 5.884  0.192  0.432  -0.598 N2  PZ5 8  
PZ5 C7  C8  C 0 1 Y N N 40.507 25.843 5.873  0.940  -0.615 -0.339 C7  PZ5 9  
PZ5 C8  C9  C 0 1 Y N N 41.415 25.869 4.664  0.400  -1.975 -0.563 C8  PZ5 10 
PZ5 C13 C10 C 0 1 Y N N 41.318 26.886 3.698  -0.021 -2.361 -1.836 C13 PZ5 11 
PZ5 C12 C11 C 0 1 Y N N 42.187 26.901 2.592  -0.524 -3.629 -2.039 C12 PZ5 12 
PZ5 C11 C12 C 0 1 Y N N 43.171 25.909 2.444  -0.611 -4.519 -0.983 C11 PZ5 13 
PZ5 C10 C13 C 0 1 Y N N 43.282 24.895 3.401  -0.195 -4.142 0.282  C10 PZ5 14 
PZ5 C9  C14 C 0 1 Y N N 42.408 24.881 4.505  0.315  -2.879 0.496  C9  PZ5 15 
PZ5 C14 C15 C 0 1 Y N N 40.972 26.543 7.129  2.305  -0.453 0.169  C14 PZ5 16 
PZ5 C16 C16 C 0 1 Y N N 40.107 26.522 8.358  2.798  0.857  0.374  C16 PZ5 17 
PZ5 C17 C17 C 0 1 Y N N 40.552 27.126 9.540  4.091  1.048  0.857  C17 PZ5 18 
PZ5 C18 C18 C 0 1 Y N N 41.809 27.741 9.565  4.878  -0.035 1.130  C18 PZ5 19 
PZ5 C19 C19 C 0 1 Y N N 42.628 27.778 8.423  4.402  -1.332 0.931  C19 PZ5 20 
PZ5 N3  N2  N 0 1 N N N 43.796 28.462 8.479  5.226  -2.422 1.217  N3  PZ5 21 
PZ5 C15 C20 C 0 1 Y N N 42.222 27.181 7.216  3.122  -1.547 0.454  C15 PZ5 22 
PZ5 C4  C21 C 0 1 Y N N 38.800 25.810 8.285  1.904  1.978  0.063  C4  PZ5 23 
PZ5 C6  C22 C 0 1 Y N N 38.436 25.125 6.991  0.607  1.696  -0.428 C6  PZ5 24 
PZ5 C3  C23 C 0 1 Y N N 37.950 25.726 9.404  2.315  3.300  0.238  C3  PZ5 25 
PZ5 C2  C24 C 0 1 Y N N 36.743 25.034 9.315  1.464  4.325  -0.059 C2  PZ5 26 
PZ5 C1  C25 C 0 1 Y N N 36.393 24.390 8.117  0.179  4.064  -0.539 C1  PZ5 27 
PZ5 N1  N3  N 0 1 N N N 35.266 23.645 8.022  -0.677 5.125  -0.836 N1  PZ5 28 
PZ5 C5  C26 C 0 1 Y N N 37.195 24.474 6.976  -0.249 2.766  -0.731 C5  PZ5 29 
PZ5 H1  H1  H 0 1 N N N 44.066 22.628 -0.412 -8.373 -0.132 2.983  H1  PZ5 30 
PZ5 H2  H2  H 0 1 N N N 40.972 20.962 2.047  -6.028 -1.172 -0.326 H2  PZ5 31 
PZ5 H3  H3  H 0 1 N N N 41.704 22.174 3.152  -6.235 0.582  -0.546 H3  PZ5 32 
PZ5 H4  H4  H 0 1 N N N 40.404 23.964 2.101  -4.515 1.003  1.191  H4  PZ5 33 
PZ5 H5  H5  H 0 1 N N N 39.725 22.802 0.911  -4.308 -0.751 1.410  H5  PZ5 34 
PZ5 H6  H6  H 0 1 N N N 38.023 23.132 2.523  -3.620 -0.967 -0.962 H6  PZ5 35 
PZ5 H7  H7  H 0 1 N N N 38.751 21.534 2.903  -3.827 0.787  -1.182 H7  PZ5 36 
PZ5 H8  H8  H 0 1 N N N 38.570 22.417 5.020  -2.108 1.207  0.554  H8  PZ5 37 
PZ5 H9  H9  H 0 1 N N N 40.223 22.970 4.585  -1.901 -0.547 0.774  H9  PZ5 38 
PZ5 H10 H10 H 0 1 N N N 39.098 25.137 3.780  -1.213 -0.763 -1.598 H10 PZ5 39 
PZ5 H11 H11 H 0 1 N N N 37.636 24.560 4.650  -1.420 0.991  -1.818 H11 PZ5 40 
PZ5 H12 H12 H 0 1 N N N 40.572 27.660 3.806  0.046  -1.667 -2.661 H12 PZ5 41 
PZ5 H13 H13 H 0 1 N N N 42.097 27.681 1.851  -0.851 -3.929 -3.024 H13 PZ5 42 
PZ5 H14 H14 H 0 1 N N N 43.839 25.929 1.595  -1.005 -5.511 -1.146 H14 PZ5 43 
PZ5 H15 H15 H 0 1 N N N 44.034 24.127 3.294  -0.266 -4.841 1.103  H15 PZ5 44 
PZ5 H16 H16 H 0 1 N N N 42.500 24.099 5.244  0.639  -2.586 1.484  H16 PZ5 45 
PZ5 H17 H17 H 0 1 N N N 39.931 27.117 10.424 4.470  2.047  1.014  H17 PZ5 46 
PZ5 H18 H18 H 0 1 N N N 42.157 28.196 10.480 5.880  0.115  1.504  H18 PZ5 47 
PZ5 H19 H19 H 0 1 N N N 43.930 28.818 9.404  6.125  -2.276 1.553  H19 PZ5 48 
PZ5 H20 H20 H 0 1 N N N 44.552 27.851 8.245  4.900  -3.326 1.081  H20 PZ5 49 
PZ5 H21 H21 H 0 1 N N N 42.872 27.213 6.354  2.759  -2.553 0.301  H21 PZ5 50 
PZ5 H22 H22 H 0 1 N N N 38.233 26.198 10.333 3.307  3.512  0.609  H22 PZ5 51 
PZ5 H23 H23 H 0 1 N N N 36.079 24.993 10.165 1.787  5.346  0.079  H23 PZ5 52 
PZ5 H24 H24 H 0 1 N N N 34.780 23.662 8.896  -0.378 6.039  -0.709 H24 PZ5 53 
PZ5 H25 H25 H 0 1 N N N 34.677 24.021 7.306  -1.570 4.949  -1.169 H25 PZ5 54 
PZ5 H26 H26 H 0 1 N N N 36.849 24.025 6.057  -1.244 2.573  -1.104 H26 PZ5 55 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
PZ5 C29 C28 TRIP N N 1  
PZ5 C28 C27 SING N N 2  
PZ5 C26 C27 SING N N 3  
PZ5 C26 C25 SING N N 4  
PZ5 C11 C12 DOUB Y N 5  
PZ5 C11 C10 SING Y N 6  
PZ5 C12 C13 SING Y N 7  
PZ5 C25 C21 SING N N 8  
PZ5 C10 C9  DOUB Y N 9  
PZ5 C13 C8  DOUB Y N 10 
PZ5 C21 C20 SING N N 11 
PZ5 C9  C8  SING Y N 12 
PZ5 C20 N2  SING N N 13 
PZ5 C8  C7  SING N N 14 
PZ5 C7  N2  DOUB Y N 15 
PZ5 C7  C14 SING Y N 16 
PZ5 N2  C6  SING Y N 17 
PZ5 C5  C6  DOUB Y N 18 
PZ5 C5  C1  SING Y N 19 
PZ5 C6  C4  SING Y N 20 
PZ5 C14 C15 DOUB Y N 21 
PZ5 C14 C16 SING Y N 22 
PZ5 C15 C19 SING Y N 23 
PZ5 N1  C1  SING N N 24 
PZ5 C1  C2  DOUB Y N 25 
PZ5 C4  C16 SING Y N 26 
PZ5 C4  C3  DOUB Y N 27 
PZ5 C16 C17 DOUB Y N 28 
PZ5 C19 N3  SING N N 29 
PZ5 C19 C18 DOUB Y N 30 
PZ5 C2  C3  SING Y N 31 
PZ5 C17 C18 SING Y N 32 
PZ5 C29 H1  SING N N 33 
PZ5 C27 H2  SING N N 34 
PZ5 C27 H3  SING N N 35 
PZ5 C26 H4  SING N N 36 
PZ5 C26 H5  SING N N 37 
PZ5 C25 H6  SING N N 38 
PZ5 C25 H7  SING N N 39 
PZ5 C21 H8  SING N N 40 
PZ5 C21 H9  SING N N 41 
PZ5 C20 H10 SING N N 42 
PZ5 C20 H11 SING N N 43 
PZ5 C13 H12 SING N N 44 
PZ5 C12 H13 SING N N 45 
PZ5 C11 H14 SING N N 46 
PZ5 C10 H15 SING N N 47 
PZ5 C9  H16 SING N N 48 
PZ5 C17 H17 SING N N 49 
PZ5 C18 H18 SING N N 50 
PZ5 N3  H19 SING N N 51 
PZ5 N3  H20 SING N N 52 
PZ5 C15 H21 SING N N 53 
PZ5 C3  H22 SING N N 54 
PZ5 C2  H23 SING N N 55 
PZ5 N1  H24 SING N N 56 
PZ5 N1  H25 SING N N 57 
PZ5 C5  H26 SING N N 58 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
PZ5 InChI            InChI                1.03  "InChI=1S/C26H25N3/c1-2-3-4-5-9-16-29-25-18-21(28)13-15-23(25)22-14-12-20(27)17-24(22)26(29)19-10-7-6-8-11-19/h1,6-8,10-15,17-18,28H,3-5,9,16,27H2/p+1" 
PZ5 InChIKey         InChI                1.03  WJXZOVZRCNSPKF-UHFFFAOYSA-O                                                                                                                             
PZ5 SMILES_CANONICAL CACTVS               3.385 "Nc1ccc2c3ccc(N)cc3[n+](CCCCCC#C)c(c4ccccc4)c2c1"                                                                                                       
PZ5 SMILES           CACTVS               3.385 "Nc1ccc2c3ccc(N)cc3[n+](CCCCCC#C)c(c4ccccc4)c2c1"                                                                                                       
PZ5 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.4 "C#CCCCCC[n+]1c2cc(ccc2c3ccc(cc3c1c4ccccc4)N)N"                                                                                                         
PZ5 SMILES           "OpenEye OEToolkits" 2.0.4 "C#CCCCCC[n+]1c2cc(ccc2c3ccc(cc3c1c4ccccc4)N)N"                                                                                                         
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
PZ5 "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.4 5-hept-6-ynyl-6-phenyl-phenanthridin-5-ium-3,8-diamine 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
PZ5 "Create component" 2015-10-29 EBI  
PZ5 "Initial release"  2016-01-20 RCSB 
# 
