data_NB5
#

_chem_comp.id                                   NB5
_chem_comp.name                                 "7-fluoranyl-~{N}-[1-(2-methyl-2-azaspiro[3.3]heptan-6-yl)pyrazol-4-yl]-4-(1-methylcyclopropyl)oxy-6-(2-methylpyrimidin-5-yl)pyrido[3,2-d]pyrimidin-2-amine"
_chem_comp.type                                 non-polymer
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C26 H28 F N9 O"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        ?
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2019-11-21
_chem_comp.pdbx_modified_date                   2020-10-23
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       501.559
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    NB5
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       6THZ
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 PDBE
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
NB5  C1   C1   C  0  1  Y  N  N  -15.669  -38.077   -8.853   -1.836  -1.946  -0.081  C1   NB5   1  
NB5  C2   C2   C  0  1  Y  N  N  -12.812  -37.947  -12.287   -6.116   0.074   0.973  C2   NB5   2  
NB5  C3   C3   C  0  1  Y  N  N  -14.144  -39.695  -13.066   -6.146  -1.925  -0.351  C3   NB5   3  
NB5  C7   C4   C  0  1  Y  N  N  -16.976  -38.265   -9.243   -1.231  -0.681  -0.181  C7   NB5   4  
NB5  C8   C5   C  0  1  Y  N  N  -17.192  -38.510  -10.587   -2.044   0.478  -0.133  C8   NB5   5  
NB5  C9   C6   C  0  1  Y  N  N  -21.594  -38.244   -8.139    2.796  -0.393  -0.601  C9   NB5   6  
NB5  C10  C7   C  0  1  Y  N  N  -14.658  -38.159   -9.784   -3.194  -2.004   0.053  C10  NB5   7  
NB5  C11  C8   C  0  1  Y  N  N  -14.948  -38.478  -11.097   -3.944  -0.814   0.094  C11  NB5   8  
NB5  C12  C9   C  0  1  Y  N  N  -18.517  -38.669  -10.926   -1.410   1.742  -0.236  C12  NB5   9  
NB5  C13  C10  C  0  1  Y  N  N  -12.223  -39.122  -14.117   -8.078  -1.031   0.513  C13  NB5  10  
NB5  C14  C11  C  0  1  Y  N  N  -19.217  -38.316   -8.771    0.630   0.663  -0.412  C14  NB5  11  
NB5  C15  C12  C  0  1  N  N  N  -20.486  -39.983  -13.752   -0.592   4.452  -1.451  C15  NB5  12  
NB5  C16  C13  C  0  1  N  N  N  -21.039  -40.185  -12.374   -1.882   5.217  -1.146  C16  NB5  13  
NB5  C19  C14  C  0  1  N  N  N  -27.831  -36.786   -6.230    8.441  -0.346   0.710  C19  NB5  14  
NB5  C20  C15  C  0  1  N  N  N  -26.368  -36.418   -4.737    6.443   0.330   0.848  C20  NB5  15  
NB5  C21  C16  C  0  1  N  N  N  -25.135  -37.735   -7.691    5.889  -2.246  -0.858  C21  NB5  16  
NB5  C22  C17  C  0  1  N  N  N  -26.321  -36.990   -6.150    7.107  -0.877   0.182  C22  NB5  17  
NB5  C24  C18  C  0  1  N  N  N  -11.267  -39.375  -15.222   -9.575  -1.106   0.661  C24  NB5  18  
NB5  N29  N1   N  0  1  Y  N  N  -23.537  -38.622   -9.256    3.363  -2.518  -0.599  N29  NB5  19  
NB5  C4   C19  C  0  1  Y  N  N  -22.210  -38.740   -9.305    2.333  -1.714  -0.519  C4   NB5  20  
NB5  C5   C20  C  0  1  Y  N  N  -22.625  -37.802   -7.347    4.146  -0.434  -0.737  C5   NB5  21  
NB5  C6   C21  C  0  1  Y  N  N  -13.955  -38.705  -12.122   -5.418  -0.889   0.240  C6   NB5  22  
NB5  C17  C22  C  0  1  N  N  N  -25.374  -36.320   -7.142    6.646  -2.302   0.482  C17  NB5  23  
NB5  C18  C23  C  0  1  N  N  N  -25.737  -38.375   -6.432    6.903  -1.176  -1.302  C18  NB5  24  
NB5  C23  C24  C  0  1  N  N  N  -20.197  -38.978  -12.674   -1.404   4.114  -0.199  C23  NB5  25  
NB5  C25  C25  C  0  1  N  N  N  -20.866  -37.656  -12.797   -0.830   4.542   1.153  C25  NB5  26  
NB5  C26  C26  C  0  1  N  N  N  -28.621  -36.291   -4.021    8.111   1.736   1.923  C26  NB5  27  
NB5  N27  N2   N  0  1  Y  N  N  -11.922  -38.119  -13.277   -7.429  -0.034   1.083  N27  NB5  28  
NB5  N28  N3   N  0  1  Y  N  N  -13.289  -39.932  -14.067   -7.459  -1.954  -0.196  N28  NB5  29  
NB5  N30  N4   N  0  1  Y  N  N  -16.216  -38.643  -11.502   -3.363   0.367   0.005  N30  NB5  30  
NB5  N31  N5   N  0  1  Y  N  N  -17.965  -38.157   -8.344    0.093  -0.540  -0.320  N31  NB5  31  
NB5  N32  N6   N  0  1  Y  N  N  -19.513  -38.568  -10.044   -0.096   1.777  -0.372  N32  NB5  32  
NB5  N33  N7   N  0  1  Y  N  N  -23.760  -38.061   -8.060    4.519  -1.740  -0.736  N33  NB5  33  
NB5  N34  N8   N  0  1  N  N  N  -27.696  -35.881   -5.072    7.632   0.360   1.731  N34  NB5  34  
NB5  N35  N9   N  0  1  N  N  N  -20.268  -38.218   -7.848    2.002   0.768  -0.555  N35  NB5  35  
NB5  O36  O1   O  0  1  N  N  N  -18.807  -38.952  -12.266   -2.133   2.885  -0.198  O36  NB5  36  
NB5  F37  F1   F  0  1  N  N  N  -13.411  -37.935   -9.381   -3.816  -3.200   0.147  F37  NB5  37  
NB5  H1   H1   H  0  1  N  N  N  -15.437  -37.866   -7.819   -1.243  -2.849  -0.114  H1   NB5  38  
NB5  H2   H2   H  0  1  N  N  N  -12.621  -37.162  -11.570   -5.592   0.891   1.446  H2   NB5  39  
NB5  H3   H3   H  0  1  N  N  N  -15.029  -40.310  -12.992   -5.645  -2.690  -0.927  H3   NB5  40  
NB5  H4   H4   H  0  1  N  N  N  -21.159  -39.721  -14.582   -0.614   3.737  -2.273  H4   NB5  41  
NB5  H5   H5   H  0  1  N  N  N  -19.683  -40.637  -14.124    0.351   4.980  -1.311  H5   NB5  42  
NB5  H6   H6   H  0  1  N  N  N  -22.118  -40.071  -12.192   -1.787   6.248  -0.805  H6   NB5  43  
NB5  H7   H7   H  0  1  N  N  N  -20.642  -40.987  -11.734   -2.751   5.005  -1.768  H7   NB5  44  
NB5  H8   H8   H  0  1  N  N  N  -28.182  -36.302   -7.154    9.091  -1.119   1.121  H8   NB5  45  
NB5  H9   H9   H  0  1  N  N  N  -28.428  -37.690   -6.040    8.955   0.320   0.017  H9   NB5  46  
NB5  H10  H10  H  0  1  N  N  N  -26.366  -37.172   -3.936    6.357   1.199   0.196  H10  NB5  47  
NB5  H11  H11  H  0  1  N  N  N  -25.604  -35.655   -4.525    5.514   0.091   1.365  H11  NB5  48  
NB5  H12  H12  H  0  1  N  N  N  -25.809  -37.910   -8.543    5.950  -3.170  -1.432  H12  NB5  49  
NB5  H13  H13  H  0  1  N  N  N  -11.622  -40.221  -15.829   -9.824  -1.698   1.542  H13  NB5  50  
NB5  H14  H14  H  0  1  N  N  N  -11.191  -38.478  -15.853   -9.981  -0.101   0.773  H14  NB5  51  
NB5  H15  H15  H  0  1  N  N  N  -10.278  -39.614  -14.804  -10.005  -1.575  -0.225  H15  NB5  52  
NB5  H16  H16  H  0  1  N  N  N  -21.671  -39.165  -10.139    1.302  -2.017  -0.410  H16  NB5  53  
NB5  H17  H17  H  0  1  N  N  N  -22.553  -37.347   -6.370    4.804   0.418  -0.830  H17  NB5  54  
NB5  H18  H18  H  0  1  N  N  N  -24.492  -35.840   -6.693    5.991  -2.377   1.351  H18  NB5  55  
NB5  H19  H19  H  0  1  N  N  N  -25.853  -35.623   -7.845    7.456  -3.031   0.497  H19  NB5  56  
NB5  H20  H20  H  0  1  N  N  N  -26.480  -39.164   -6.620    7.787  -1.587  -1.791  H20  NB5  57  
NB5  H21  H21  H  0  1  N  N  N  -25.003  -38.730   -5.694    6.455  -0.352  -1.857  H21  NB5  58  
NB5  H22  H22  H  0  1  N  N  N  -20.573  -37.016  -11.951   -0.795   5.630   1.204  H22  NB5  59  
NB5  H23  H23  H  0  1  N  N  N  -20.563  -37.178  -13.740   -1.464   4.161   1.954  H23  NB5  60  
NB5  H24  H24  H  0  1  N  N  N  -21.957  -37.795  -12.791    0.177   4.140   1.263  H24  NB5  61  
NB5  H25  H25  H  0  1  N  N  N  -28.519  -35.616   -3.159    8.038   2.280   0.981  H25  NB5  62  
NB5  H26  H26  H  0  1  N  N  N  -29.652  -36.246   -4.402    7.500   2.231   2.677  H26  NB5  63  
NB5  H27  H27  H  0  1  N  N  N  -28.389  -37.320   -3.710    9.150   1.717   2.251  H27  NB5  64  
NB5  H29  H29  H  0  1  N  N  N  -20.017  -38.120   -6.885    2.417   1.642  -0.624  H29  NB5  65  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
NB5  C24  C13  SING  N  N   1  
NB5  C13  N28  DOUB  Y  N   2  
NB5  C13  N27  SING  Y  N   3  
NB5  N28  C3   SING  Y  N   4  
NB5  C15  C23  SING  N  N   5  
NB5  C15  C16  SING  N  N   6  
NB5  N27  C2   DOUB  Y  N   7  
NB5  C3   C6   DOUB  Y  N   8  
NB5  C25  C23  SING  N  N   9  
NB5  C23  C16  SING  N  N  10  
NB5  C23  O36  SING  N  N  11  
NB5  C2   C6   SING  Y  N  12  
NB5  O36  C12  SING  N  N  13  
NB5  C6   C11  SING  N  N  14  
NB5  N30  C11  DOUB  Y  N  15  
NB5  N30  C8   SING  Y  N  16  
NB5  C11  C10  SING  Y  N  17  
NB5  C12  C8   DOUB  Y  N  18  
NB5  C12  N32  SING  Y  N  19  
NB5  C8   C7   SING  Y  N  20  
NB5  N32  C14  DOUB  Y  N  21  
NB5  C10  F37  SING  N  N  22  
NB5  C10  C1   DOUB  Y  N  23  
NB5  C4   N29  DOUB  Y  N  24  
NB5  C4   C9   SING  Y  N  25  
NB5  N29  N33  SING  Y  N  26  
NB5  C7   C1   SING  Y  N  27  
NB5  C7   N31  DOUB  Y  N  28  
NB5  C14  N31  SING  Y  N  29  
NB5  C14  N35  SING  N  N  30  
NB5  C9   N35  SING  N  N  31  
NB5  C9   C5   DOUB  Y  N  32  
NB5  N33  C21  SING  N  N  33  
NB5  N33  C5   SING  Y  N  34  
NB5  C21  C17  SING  N  N  35  
NB5  C21  C18  SING  N  N  36  
NB5  C17  C22  SING  N  N  37  
NB5  C18  C22  SING  N  N  38  
NB5  C19  C22  SING  N  N  39  
NB5  C19  N34  SING  N  N  40  
NB5  C22  C20  SING  N  N  41  
NB5  N34  C20  SING  N  N  42  
NB5  N34  C26  SING  N  N  43  
NB5  C1   H1   SING  N  N  44  
NB5  C2   H2   SING  N  N  45  
NB5  C3   H3   SING  N  N  46  
NB5  C15  H4   SING  N  N  47  
NB5  C15  H5   SING  N  N  48  
NB5  C16  H6   SING  N  N  49  
NB5  C16  H7   SING  N  N  50  
NB5  C19  H8   SING  N  N  51  
NB5  C19  H9   SING  N  N  52  
NB5  C20  H10  SING  N  N  53  
NB5  C20  H11  SING  N  N  54  
NB5  C21  H12  SING  N  N  55  
NB5  C24  H13  SING  N  N  56  
NB5  C24  H14  SING  N  N  57  
NB5  C24  H15  SING  N  N  58  
NB5  C4   H16  SING  N  N  59  
NB5  C5   H17  SING  N  N  60  
NB5  C17  H18  SING  N  N  61  
NB5  C17  H19  SING  N  N  62  
NB5  C18  H20  SING  N  N  63  
NB5  C18  H21  SING  N  N  64  
NB5  C25  H22  SING  N  N  65  
NB5  C25  H23  SING  N  N  66  
NB5  C25  H24  SING  N  N  67  
NB5  C26  H25  SING  N  N  68  
NB5  C26  H26  SING  N  N  69  
NB5  C26  H27  SING  N  N  70  
NB5  N35  H29  SING  N  N  71  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
NB5  InChI             InChI                 1.03   "InChI=1S/C26H28FN9O/c1-15-28-9-16(10-29-15)21-19(27)6-20-22(33-21)23(37-25(2)4-5-25)34-24(32-20)31-17-11-30-36(12-17)18-7-26(8-18)13-35(3)14-26/h6,9-12,18H,4-5,7-8,13-14H2,1-3H3,(H,31,32,34)"  
NB5  InChIKey          InChI                 1.03   XGNWCJAZTBIOLY-UHFFFAOYSA-N  
NB5  SMILES_CANONICAL  CACTVS                3.385  "CN1CC2(CC(C2)n3cc(Nc4nc(OC5(C)CC5)c6nc(c(F)cc6n4)c7cnc(C)nc7)cn3)C1"  
NB5  SMILES            CACTVS                3.385  "CN1CC2(CC(C2)n3cc(Nc4nc(OC5(C)CC5)c6nc(c(F)cc6n4)c7cnc(C)nc7)cn3)C1"  
NB5  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.7  "Cc1ncc(cn1)c2c(cc3c(n2)c(nc(n3)Nc4cnn(c4)C5CC6(C5)CN(C6)C)OC7(CC7)C)F"  
NB5  SMILES            "OpenEye OEToolkits"  2.0.7  "Cc1ncc(cn1)c2c(cc3c(n2)c(nc(n3)Nc4cnn(c4)C5CC6(C5)CN(C6)C)OC7(CC7)C)F"  
#
_pdbx_chem_comp_identifier.comp_id          NB5
_pdbx_chem_comp_identifier.type             "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program          "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version  2.0.7
_pdbx_chem_comp_identifier.identifier       "7-fluoranyl-~{N}-[1-(2-methyl-2-azaspiro[3.3]heptan-6-yl)pyrazol-4-yl]-4-(1-methylcyclopropyl)oxy-6-(2-methylpyrimidin-5-yl)pyrido[3,2-d]pyrimidin-2-amine"
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
NB5  "Create component"  2019-11-21  PDBE  
NB5  "Initial release"   2020-10-28  RCSB  
##
