data_LX5
# 
_chem_comp.id                                    LX5 
_chem_comp.name                                  "[(1~{S},2~{S},3~{S},4~{S})-2-(hydroxymethyl)-3,4-bis(oxidanyl)cyclopentyl] hydrogen sulfate" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C6 H12 O7 S" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2019-09-26 
_chem_comp.pdbx_modified_date                    2024-09-27 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        228.220 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     LX5 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        6SXU 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  EBI 
_chem_comp.pdbx_pcm                              Y 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
LX5 C1  C1  C 0 1 N N S N N N 8.436  23.895 -36.236 0.040  0.013  0.363  C1  LX5 1  
LX5 C2  C2  C 0 1 N N N N N N 6.999  23.626 -36.510 -0.485 1.418  0.726  C2  LX5 2  
LX5 C6  C3  C 0 1 N N N N N N 8.874  25.269 -34.071 -1.409 -2.010 0.724  C6  LX5 3  
LX5 C5  C4  C 0 1 N N S N N N 8.529  23.974 -34.738 -1.166 -0.785 -0.161 C5  LX5 4  
LX5 C3  C5  C 0 1 N N S N N N 6.666  22.633 -35.428 -1.762 1.580  -0.136 C3  LX5 5  
LX5 C4  C6  C 0 1 N N S N N N 7.382  23.138 -34.199 -2.382 0.162  -0.098 C4  LX5 6  
LX5 O7  O1  O 0 1 N N N N N N 7.736  26.187 -34.083 -2.455 -2.804 0.162  O7  LX5 7  
LX5 O8  O2  O 0 1 N N N N N N 7.652  22.228 -33.173 -3.234 -0.042 -1.228 O8  LX5 8  
LX5 O9  O3  O 0 1 N N N N N N 5.304  22.279 -35.240 -2.648 2.537  0.448  O9  LX5 9  
LX5 O10 O4  O 0 1 N N N N N N 9.074  22.815 -36.863 1.041  0.111  -0.652 O10 LX5 10 
LX5 S11 S1  S 0 1 N N N N N N 10.488 22.874 -37.432 2.467  0.079  -0.122 S11 LX5 11 
LX5 O12 O5  O 0 1 N N N N N N 11.263 23.510 -36.392 2.771  -1.362 0.266  O12 LX5 12 
LX5 O13 O6  O 0 1 N N N N N N 10.430 23.785 -38.563 3.312  0.385  -1.222 O13 LX5 13 
LX5 O14 O7  O 0 1 N N N N N N 10.746 21.352 -37.698 2.462  0.826  1.087  O14 LX5 14 
LX5 H1  H1  H 0 1 N N N N N N 8.735  24.855 -36.683 0.453  -0.471 1.248  H1  LX5 15 
LX5 H21 H2  H 0 1 N N N N N N 6.394  24.540 -36.416 -0.731 1.471  1.786  H21 LX5 16 
LX5 H2  H3  H 0 1 N N N N N N 6.855  23.193 -37.511 0.251  2.179  0.466  H2  LX5 17 
LX5 H6  H4  H 0 1 N N N N N N 9.164  25.070 -33.029 -0.496 -2.601 0.784  H6  LX5 18 
LX5 H61 H5  H 0 1 N N N N N N 9.716  25.734 -34.604 -1.697 -1.684 1.724  H61 LX5 19 
LX5 H5  H6  H 0 1 N N N N N N 9.406  23.347 -34.517 -0.989 -1.098 -1.190 H5  LX5 20 
LX5 H3  H7  H 0 1 N N N N N N 7.190  21.708 -35.710 -1.505 1.865  -1.156 H3  LX5 21 
LX5 H4  H8  H 0 1 N N N N N N 6.691  23.875 -33.764 -2.935 0.012  0.829  H4  LX5 22 
LX5 HO7 H9  H 0 1 N N N N N N 7.979  26.999 -33.655 -2.663 -3.599 0.673  HO7 LX5 23 
LX5 HO8 H10 H 0 1 N N N N N N 8.102  22.673 -32.465 -4.015 0.528  -1.240 HO8 LX5 24 
LX5 HO9 H11 H 0 1 N N N N N N 5.235  21.650 -34.532 -2.275 3.426  0.521  HO9 LX5 25 
LX5 H7  H12 H 0 1 N N N N N N 11.550 24.366 -36.689 3.661  -1.494 0.619  H7  LX5 26 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
LX5 O13 S11 DOUB N N 1  
LX5 O14 S11 DOUB N N 2  
LX5 S11 O10 SING N N 3  
LX5 S11 O12 SING N N 4  
LX5 O10 C1  SING N N 5  
LX5 C2  C1  SING N N 6  
LX5 C2  C3  SING N N 7  
LX5 C1  C5  SING N N 8  
LX5 C3  O9  SING N N 9  
LX5 C3  C4  SING N N 10 
LX5 C5  C4  SING N N 11 
LX5 C5  C6  SING N N 12 
LX5 C4  O8  SING N N 13 
LX5 O7  C6  SING N N 14 
LX5 C1  H1  SING N N 15 
LX5 C2  H21 SING N N 16 
LX5 C2  H2  SING N N 17 
LX5 C6  H6  SING N N 18 
LX5 C6  H61 SING N N 19 
LX5 C5  H5  SING N N 20 
LX5 C3  H3  SING N N 21 
LX5 C4  H4  SING N N 22 
LX5 O7  HO7 SING N N 23 
LX5 O8  HO8 SING N N 24 
LX5 O9  HO9 SING N N 25 
LX5 O12 H7  SING N N 26 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
LX5 InChI            InChI                1.03  "InChI=1S/C6H12O7S/c7-2-3-5(13-14(10,11)12)1-4(8)6(3)9/h3-9H,1-2H2,(H,10,11,12)/t3-,4+,5+,6+/m1/s1" 
LX5 InChIKey         InChI                1.03  WLWVVBPJYHXDMI-VANKVMQKSA-N                                                                         
LX5 SMILES_CANONICAL CACTVS               3.385 "OC[C@H]1[C@H](O)[C@@H](O)C[C@@H]1O[S](O)(=O)=O"                                                    
LX5 SMILES           CACTVS               3.385 "OC[CH]1[CH](O)[CH](O)C[CH]1O[S](O)(=O)=O"                                                          
LX5 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C1[C@@H]([C@H]([C@@H]([C@H]1OS(=O)(=O)O)CO)O)O"                                                    
LX5 SMILES           "OpenEye OEToolkits" 2.0.7 "C1C(C(C(C1OS(=O)(=O)O)CO)O)O"                                                                      
# 
_pdbx_chem_comp_identifier.comp_id           LX5 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   2.0.7 
_pdbx_chem_comp_identifier.identifier        "[(1~{S},2~{S},3~{S},4~{S})-2-(hydroxymethyl)-3,4-bis(oxidanyl)cyclopentyl] hydrogen sulfate" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
LX5 "Create component" 2019-09-26 EBI  
LX5 "Initial release"  2020-02-26 RCSB 
LX5 "Modify PCM"       2024-09-27 PDBE 
# 
loop_
_pdbx_chem_comp_pcm.pcm_id 
_pdbx_chem_comp_pcm.comp_id 
_pdbx_chem_comp_pcm.modified_residue_id 
_pdbx_chem_comp_pcm.type 
_pdbx_chem_comp_pcm.category 
_pdbx_chem_comp_pcm.position 
_pdbx_chem_comp_pcm.polypeptide_position 
_pdbx_chem_comp_pcm.comp_id_linking_atom 
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom 
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession 
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession 
1 LX5 GLU None "Covalent chemical modification" "Amino-acid side chain" "Any position" C2 OE1 ? ? 
2 LX5 GLU None "Covalent chemical modification" "Amino-acid side chain" "Any position" C2 OE2 ? ? 
# 
