data_KV5
#

_chem_comp.id                                   KV5
_chem_comp.name                                 "(2~{R},3~{S},4~{R},5~{R},6~{S})-2-(hydroxymethyl)-6-(2-naphthalen-2-yl-1~{H}-imidazol-4-yl)oxane-3,4,5-triol"
_chem_comp.type                                 NON-POLYMER
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C19 H20 N2 O5"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        ?
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2019-06-29
_chem_comp.pdbx_modified_date                   2020-02-14
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       356.373
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    KV5
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       6S4O
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 EBI
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
KV5  C4     C1   C  0  1  Y  N  N  35.744  24.218  30.285  -1.188   1.397  -0.047  C4     KV5   1  
KV5  C6     C2   C  0  1  Y  N  N  36.088  24.820  31.573  -2.583   0.910  -0.076  C6     KV5   2  
KV5  C8     C3   C  0  1  Y  N  N  37.727  25.770  33.081  -4.166  -0.904  -0.020  C8     KV5   3  
KV5  N3     N1   N  0  1  Y  N  N  36.641  23.821  29.352  -0.795   2.702  -0.116  N3     KV5   4  
KV5  C2     C4   C  0  1  Y  N  N  35.950  23.302  28.326   0.572   2.712  -0.056  C2     KV5   5  
KV5  "O5'"  O1   O  0  1  N  N  N  33.322  21.477  28.044   2.725   0.185  -1.018  "O5'"  KV5   6  
KV5  "C5'"  C5   C  0  1  N  N  R  32.180  20.940  27.348   4.071  -0.293  -1.043  "C5'"  KV5   7  
KV5  "C4'"  C6   C  0  1  N  N  S  32.363  21.113  25.827   4.308  -1.210   0.161  "C4'"  KV5   8  
KV5  "C3'"  C7   C  0  1  N  N  R  32.660  22.556  25.460   4.007  -0.437   1.448  "C3'"  KV5   9  
KV5  "C2'"  C8   C  0  1  N  N  R  33.793  23.124  26.321   2.570   0.089   1.392  "C2'"  KV5  10  
KV5  "C1'"  C9   C  0  1  N  N  S  33.509  22.870  27.802   2.401   0.956   0.141  "C1'"  KV5  11  
KV5  C1     C10  C  0  1  Y  N  N  34.640  23.355  28.655   0.973   1.428   0.047  C1     KV5  12  
KV5  N5     N2   N  0  1  Y  N  N  34.515  23.915  29.878  -0.113   0.647   0.055  N5     KV5  13  
KV5  "O2'"  O2   O  0  1  N  N  N  33.958  24.537  26.126   2.302   0.873   2.556  "O2'"  KV5  14  
KV5  "O3'"  O3   O  0  1  N  N  N  33.003  22.623  24.074   4.154  -1.306   2.573  "O3'"  KV5  15  
KV5  "O4'"  O4   O  0  1  N  N  N  31.179  20.706  25.147   5.669  -1.645   0.170  "O4'"  KV5  16  
KV5  "C6'"  C11  C  0  1  N  N  N  32.043  19.491  27.772   4.311  -1.076  -2.335  "C6'"  KV5  17  
KV5  "O6'"  O5   O  0  1  N  N  N  33.079  18.659  27.225   4.204  -0.193  -3.454  "O6'"  KV5  18  
KV5  C11    C12  C  0  1  Y  N  N  35.107  24.941  32.556  -3.641   1.829  -0.188  C11    KV5  19  
KV5  C10    C13  C  0  1  Y  N  N  35.420  25.458  33.780  -4.931   1.407  -0.216  C10    KV5  20  
KV5  C9     C14  C  0  1  Y  N  N  36.731  25.892  34.078  -5.224   0.034  -0.133  C9     KV5  21  
KV5  C7     C15  C  0  1  Y  N  N  37.371  25.219  31.835  -2.839  -0.449   0.003  C7     KV5  22  
KV5  C15    C16  C  0  1  Y  N  N  37.093  26.440  35.336  -6.550  -0.427  -0.155  C15    KV5  23  
KV5  C14    C17  C  0  1  Y  N  N  38.369  26.844  35.579  -6.803  -1.762  -0.068  C14    KV5  24  
KV5  C13    C18  C  0  1  Y  N  N  39.354  26.733  34.584  -5.764  -2.684   0.044  C13    KV5  25  
KV5  C12    C19  C  0  1  Y  N  N  39.042  26.210  33.369  -4.465  -2.275   0.069  C12    KV5  26  
KV5  H1     H1   H  0  1  N  N  N  37.636  23.900  29.416  -1.376   3.475  -0.193  H1     KV5  27  
KV5  H2     H2   H  0  1  N  N  N  36.364  22.914  27.407   1.209   3.583  -0.089  H2     KV5  28  
KV5  H3     H3   H  0  1  N  N  N  31.273  21.483  27.651   4.758   0.552  -0.996  H3     KV5  29  
KV5  H4     H4   H  0  1  N  N  N  33.210  20.489  25.508   3.649  -2.076   0.094  H4     KV5  30  
KV5  H5     H5   H  0  1  N  N  N  31.755  23.154  25.645   4.699   0.401   1.540  H5     KV5  31  
KV5  H6     H6   H  0  1  N  N  N  34.724  22.604  26.053   1.876  -0.751   1.350  H6     KV5  32  
KV5  H7     H7   H  0  1  N  N  N  32.597  23.420  28.078   3.066   1.817   0.203  H7     KV5  33  
KV5  H9     H9   H  0  1  N  N  N  34.667  24.852  26.674   2.395   0.388   3.387  H9     KV5  34  
KV5  H10    H10  H  0  1  N  N  N  33.190  23.524  23.837   3.979  -0.881   3.424  H10    KV5  35  
KV5  H11    H11  H  0  1  N  N  N  30.981  19.803  25.368   5.890  -2.230   0.907  H11    KV5  36  
KV5  H12    H12  H  0  1  N  N  N  31.069  19.113  27.429   5.309  -1.515  -2.314  H12    KV5  37  
KV5  H13    H13  H  0  1  N  N  N  32.091  19.438  28.870   3.567  -1.867  -2.424  H13    KV5  38  
KV5  H14    H14  H  0  1  N  N  N  32.953  17.763  27.516   4.345  -0.622  -4.309  H14    KV5  39  
KV5  H15    H15  H  0  1  N  N  N  34.095  24.625  32.348  -3.424   2.885  -0.253  H15    KV5  40  
KV5  H16    H16  H  0  1  N  N  N  34.651  25.537  34.534  -5.732   2.126  -0.303  H16    KV5  41  
KV5  H17    H17  H  0  1  N  N  N  38.126  25.109  31.070  -2.023  -1.152   0.084  H17    KV5  42  
KV5  H18    H18  H  0  1  N  N  N  36.346  26.538  36.110  -7.367   0.275  -0.241  H18    KV5  43  
KV5  H19    H19  H  0  1  N  N  N  38.627  27.253  36.545  -7.824  -2.112  -0.086  H19    KV5  44  
KV5  H20    H20  H  0  1  N  N  N  40.362  27.064  34.785  -5.991  -3.737   0.112  H20    KV5  45  
KV5  H21    H21  H  0  1  N  N  N  39.808  26.129  32.612  -3.670  -3.000   0.155  H21    KV5  46  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
KV5  "O3'"  "C3'"  SING  N  N   1  
KV5  "O4'"  "C4'"  SING  N  N   2  
KV5  "C3'"  "C4'"  SING  N  N   3  
KV5  "C3'"  "C2'"  SING  N  N   4  
KV5  "C4'"  "C5'"  SING  N  N   5  
KV5  "O2'"  "C2'"  SING  N  N   6  
KV5  "C2'"  "C1'"  SING  N  N   7  
KV5  "O6'"  "C6'"  SING  N  N   8  
KV5  "C5'"  "C6'"  SING  N  N   9  
KV5  "C5'"  "O5'"  SING  N  N  10  
KV5  "C1'"  "O5'"  SING  N  N  11  
KV5  "C1'"  C1     SING  N  N  12  
KV5  C2     C1     DOUB  Y  N  13  
KV5  C2     N3     SING  Y  N  14  
KV5  C1     N5     SING  Y  N  15  
KV5  N3     C4     SING  Y  N  16  
KV5  N5     C4     DOUB  Y  N  17  
KV5  C4     C6     SING  N  N  18  
KV5  C6     C7     DOUB  Y  N  19  
KV5  C6     C11    SING  Y  N  20  
KV5  C7     C8     SING  Y  N  21  
KV5  C11    C10    DOUB  Y  N  22  
KV5  C8     C12    DOUB  Y  N  23  
KV5  C8     C9     SING  Y  N  24  
KV5  C12    C13    SING  Y  N  25  
KV5  C10    C9     SING  Y  N  26  
KV5  C9     C15    DOUB  Y  N  27  
KV5  C13    C14    DOUB  Y  N  28  
KV5  C15    C14    SING  Y  N  29  
KV5  N3     H1     SING  N  N  30  
KV5  C2     H2     SING  N  N  31  
KV5  "C5'"  H3     SING  N  N  32  
KV5  "C4'"  H4     SING  N  N  33  
KV5  "C3'"  H5     SING  N  N  34  
KV5  "C2'"  H6     SING  N  N  35  
KV5  "C1'"  H7     SING  N  N  36  
KV5  "O2'"  H9     SING  N  N  37  
KV5  "O3'"  H10    SING  N  N  38  
KV5  "O4'"  H11    SING  N  N  39  
KV5  "C6'"  H12    SING  N  N  40  
KV5  "C6'"  H13    SING  N  N  41  
KV5  "O6'"  H14    SING  N  N  42  
KV5  C11    H15    SING  N  N  43  
KV5  C10    H16    SING  N  N  44  
KV5  C7     H17    SING  N  N  45  
KV5  C15    H18    SING  N  N  46  
KV5  C14    H19    SING  N  N  47  
KV5  C13    H20    SING  N  N  48  
KV5  C12    H21    SING  N  N  49  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
KV5  InChI             InChI                 1.03   "InChI=1S/C19H20N2O5/c22-9-14-15(23)16(24)17(25)18(26-14)13-8-20-19(21-13)12-6-5-10-3-1-2-4-11(10)7-12/h1-8,14-18,22-25H,9H2,(H,20,21)/t14-,15-,16+,17-,18+/m1/s1"  
KV5  InChIKey          InChI                 1.03   VRUXFQSZTNCMBM-SFFUCWETSA-N  
KV5  SMILES_CANONICAL  CACTVS                3.385  "OC[C@H]1O[C@H]([C@H](O)[C@@H](O)[C@@H]1O)c2c[nH]c(n2)c3ccc4ccccc4c3"  
KV5  SMILES            CACTVS                3.385  "OC[CH]1O[CH]([CH](O)[CH](O)[CH]1O)c2c[nH]c(n2)c3ccc4ccccc4c3"  
KV5  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.7  "c1ccc2cc(ccc2c1)c3[nH]cc(n3)[C@H]4[C@@H]([C@H]([C@@H]([C@H](O4)CO)O)O)O"  
KV5  SMILES            "OpenEye OEToolkits"  2.0.7  "c1ccc2cc(ccc2c1)c3[nH]cc(n3)C4C(C(C(C(O4)CO)O)O)O"  
#
_pdbx_chem_comp_identifier.comp_id          KV5
_pdbx_chem_comp_identifier.type             "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program          "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version  2.0.7
_pdbx_chem_comp_identifier.identifier       "(2~{R},3~{S},4~{R},5~{R},6~{S})-2-(hydroxymethyl)-6-(2-naphthalen-2-yl-1~{H}-imidazol-4-yl)oxane-3,4,5-triol"
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
KV5  "Create component"  2019-06-29  EBI   
KV5  "Initial release"   2020-02-19  RCSB  
##
