data_KU5
#

_chem_comp.id                                   KU5
_chem_comp.name                                 "2-[(2S)-1-{[(2-chlorophenyl)sulfanyl]acetyl}pyrrolidin-2-yl]-5-hydroxy-6-oxo-N-[2-(phenylsulfonyl)ethyl]-1,6-dihydropyrimidine-4-carboxamide"
_chem_comp.type                                 NON-POLYMER
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C25 H25 Cl N4 O6 S2"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        SRI-30024
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2017-07-11
_chem_comp.pdbx_modified_date                   2021-03-01
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       577.072
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    KU5
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       5WEB
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
KU5  C1   C1   C   0  1  N  N  N  194.850  -311.558  692.421  -4.546   0.718   0.015  C1   KU5   1  
KU5  C10  C2   C   0  1  Y  N  N  194.706  -315.874  695.087   5.436  -0.739  -2.144  C10  KU5   2  
KU5  C11  C3   C   0  1  Y  N  N  193.702  -314.937  695.186   6.103  -0.194  -1.063  C11  KU5   3  
KU5  C12  C4   C   0  1  Y  N  N  192.695  -314.905  694.249   5.699  -0.496   0.224  C12  KU5   4  
KU5  C13  C5   C   0  1  Y  N  N  192.685  -315.806  693.199   4.626  -1.344   0.430  C13  KU5   5  
KU5  C14  C6   C   0  1  N  N  S  193.621  -310.757  692.042  -4.285   2.190  -0.178  C14  KU5   6  
KU5  C15  C7   C   0  1  N  N  N  192.691  -310.447  693.224  -5.109   2.717  -1.372  C15  KU5   7  
KU5  C16  C8   C   0  1  N  N  N  191.958  -311.770  693.386  -4.136   3.718  -2.050  C16  KU5   8  
KU5  C17  C9   C   0  1  N  N  N  191.606  -312.122  691.955  -2.770   3.020  -1.833  C17  KU5   9  
KU5  C18  C10  C   0  1  N  N  N  192.839  -311.571  689.842  -1.826   2.103   0.305  C18  KU5  10  
KU5  C19  C11  C   0  1  N  N  N  191.999  -312.559  689.058  -0.417   2.385  -0.149  C19  KU5  11  
KU5  C2   C12  C   0  1  N  N  N  196.111  -313.476  692.145  -3.691  -1.430   0.152  C2   KU5  12  
KU5  C20  C13  C   0  1  Y  N  N  193.909  -312.988  686.948   2.316   2.266   0.440  C20  KU5  13  
KU5  C21  C14  C   0  1  Y  N  N  194.582  -313.811  687.852   2.389   2.841  -0.822  C21  KU5  14  
KU5  C22  C15  C   0  1  Y  N  N  195.878  -314.218  687.582   3.619   3.153  -1.367  C22  KU5  15  
KU5  C23  C16  C   0  1  Y  N  N  196.511  -313.814  686.428   4.777   2.895  -0.658  C23  KU5  16  
KU5  C24  C17  C   0  1  Y  N  N  195.861  -313.004  685.525   4.710   2.322   0.599  C24  KU5  17  
KU5  C25  C18  C   0  1  Y  N  N  194.567  -312.596  685.785   3.483   2.012   1.153  C25  KU5  18  
KU5  C3   C19  C   0  1  N  N  N  197.037  -313.049  693.048  -4.960  -1.952   0.346  C3   KU5  19  
KU5  C4   C20  C   0  1  N  N  N  196.878  -311.818  693.678  -6.088  -1.012   0.374  C4   KU5  20  
KU5  C5   C21  C   0  1  N  N  N  196.279  -314.807  691.458  -2.513  -2.326   0.113  C5   KU5  21  
KU5  C6   C22  C   0  1  N  N  N  195.237  -316.473  690.012  -0.116  -2.701  -0.115  C6   KU5  22  
KU5  C7   C23  C   0  1  N  N  N  195.238  -317.677  690.932   1.149  -1.871  -0.341  C7   KU5  23  
KU5  C8   C24  C   0  1  Y  N  N  193.698  -316.744  693.099   3.959  -1.889  -0.651  C8   KU5  24  
KU5  C9   C25  C   0  1  Y  N  N  194.710  -316.783  694.043   4.360  -1.582  -1.938  C9   KU5  25  
KU5  N1   N1   N   0  1  N  N  N  195.756  -311.091  693.338  -5.822   0.301   0.199  N1   KU5  26  
KU5  N2   N2   N   0  1  N  N  N  195.028  -312.746  691.835  -3.538  -0.103  -0.007  N2   KU5  27  
KU5  N3   N3   N   0  1  N  N  N  195.245  -315.203  690.719  -1.282  -1.813  -0.077  N3   KU5  28  
KU5  N4   N4   N   0  1  N  N  N  192.690  -311.506  691.177  -2.867   2.409  -0.495  N4   KU5  29  
KU5  O1   O1   O   0  1  N  N  N  197.678  -311.361  694.508  -7.229  -1.405   0.541  O1   KU5  30  
KU5  O2   O2   O   0  1  N  N  N  198.124  -313.753  693.389  -5.154  -3.285   0.504  O2   KU5  31  
KU5  O3   O3   O   0  1  N  N  N  197.320  -315.455  691.571  -2.658  -3.525   0.252  O3   KU5  32  
KU5  O4   O4   O   0  1  N  N  N  193.641  -310.845  689.265  -2.024   1.601   1.391  O4   KU5  33  
KU5  O5   O5   O   0  1  N  N  N  193.689  -319.222  692.349   2.832  -3.533   0.894  O5   KU5  34  
KU5  O6   O6   O   0  1  N  N  N  192.632  -317.557  690.869   2.560  -3.784  -1.552  O6   KU5  35  
KU5  S1   S1   S   0  1  N  N  N  193.691  -317.909  691.771   2.592  -2.969  -0.388  S1   KU5  36  
KU5  S2   S2   S   0  1  N  N  N  192.252  -312.458  687.260   0.749   1.865   1.139  S2   KU5  37  
KU5  CL1  CL1  CL  0  0  N  N  N  193.777  -311.575  684.631   3.398   1.294   2.731  CL1  KU5  38  
KU5  H1   H1   H   0  1  N  N  N  195.493  -315.900  695.826   5.752  -0.503  -3.149  H1   KU5  39  
KU5  H2   H2   H   0  1  N  N  N  193.705  -314.227  696.000   6.941   0.469  -1.224  H2   KU5  40  
KU5  H3   H3   H   0  1  N  N  N  191.907  -314.171  694.334   6.221  -0.071   1.068  H3   KU5  41  
KU5  H4   H4   H   0  1  N  N  N  191.894  -315.778  692.464   4.310  -1.580   1.435  H4   KU5  42  
KU5  H5   H5   H   0  1  N  N  N  193.924  -309.818  691.556  -4.554   2.735   0.727  H5   KU5  43  
KU5  H6   H6   H   0  1  N  N  N  193.262  -310.190  694.128  -5.363   1.905  -2.054  H6   KU5  44  
KU5  H7   H7   H   0  1  N  N  N  191.996  -309.629  692.985  -6.008   3.226  -1.026  H7   KU5  45  
KU5  H8   H8   H   0  1  N  N  N  191.054  -311.652  694.001  -4.359   3.821  -3.112  H8   KU5  46  
KU5  H9   H9   H   0  1  N  N  N  192.610  -312.534  693.835  -4.164   4.687  -1.552  H9   KU5  47  
KU5  H10  H10  H   0  1  N  N  N  190.630  -311.699  691.674  -2.613   2.252  -2.591  H10  KU5  48  
KU5  H11  H11  H   0  1  N  N  N  191.588  -313.212  691.811  -1.962   3.751  -1.861  H11  KU5  49  
KU5  H12  H12  H   0  1  N  N  N  190.938  -312.361  689.272  -0.215   1.833  -1.067  H12  KU5  50  
KU5  H13  H13  H   0  1  N  N  N  192.257  -313.576  689.390  -0.302   3.453  -0.335  H13  KU5  51  
KU5  H14  H14  H   0  1  N  N  N  194.093  -314.130  688.761   1.485   3.043  -1.377  H14  KU5  52  
KU5  H15  H15  H   0  1  N  N  N  196.396  -314.857  688.282   3.676   3.600  -2.349  H15  KU5  53  
KU5  H16  H16  H   0  1  N  N  N  197.523  -314.135  686.230   5.738   3.140  -1.087  H16  KU5  54  
KU5  H17  H17  H   0  1  N  N  N  196.359  -312.690  684.620   5.616   2.125   1.152  H17  KU5  55  
KU5  H18  H18  H   0  1  N  N  N  194.335  -316.516  689.383  -0.232  -3.416  -0.929  H18  KU5  56  
KU5  H19  H19  H   0  1  N  N  N  196.132  -316.522  689.374  -0.036  -3.236   0.831  H19  KU5  57  
KU5  H20  H20  H   0  1  N  N  N  195.451  -318.575  690.334   1.069  -1.336  -1.287  H20  KU5  58  
KU5  H21  H21  H   0  1  N  N  N  196.029  -317.542  691.685   1.264  -1.155   0.473  H21  KU5  59  
KU5  H22  H22  H   0  1  N  N  N  195.498  -317.518  693.965   3.838  -2.008  -2.782  H22  KU5  60  
KU5  H23  H23  H   0  1  N  N  N  195.600  -310.203  693.770  -6.546   0.947   0.205  H23  KU5  61  
KU5  H24  H24  H   0  1  N  N  N  194.446  -314.606  690.648  -1.167  -0.857  -0.188  H24  KU5  62  
KU5  H25  H25  H   0  1  N  N  N  198.167  -314.544  692.865  -6.079  -3.535   0.633  H25  KU5  63  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
KU5  CL1  C25  SING  N  N   1  
KU5  C24  C25  DOUB  Y  N   2  
KU5  C24  C23  SING  Y  N   3  
KU5  C25  C20  SING  Y  N   4  
KU5  C23  C22  DOUB  Y  N   5  
KU5  C20  S2   SING  N  N   6  
KU5  C20  C21  DOUB  Y  N   7  
KU5  S2   C19  SING  N  N   8  
KU5  C22  C21  SING  Y  N   9  
KU5  C19  C18  SING  N  N  10  
KU5  O4   C18  DOUB  N  N  11  
KU5  C18  N4   SING  N  N  12  
KU5  C6   N3   SING  N  N  13  
KU5  C6   C7   SING  N  N  14  
KU5  N3   C5   SING  N  N  15  
KU5  O6   S1   DOUB  N  N  16  
KU5  C7   S1   SING  N  N  17  
KU5  N4   C17  SING  N  N  18  
KU5  N4   C14  SING  N  N  19  
KU5  C5   O3   DOUB  N  N  20  
KU5  C5   C2   SING  N  N  21  
KU5  S1   O5   DOUB  N  N  22  
KU5  S1   C8   SING  N  N  23  
KU5  N2   C2   SING  N  N  24  
KU5  N2   C1   DOUB  N  N  25  
KU5  C17  C16  SING  N  N  26  
KU5  C14  C1   SING  N  N  27  
KU5  C14  C15  SING  N  N  28  
KU5  C2   C3   DOUB  N  N  29  
KU5  C1   N1   SING  N  N  30  
KU5  C3   O2   SING  N  N  31  
KU5  C3   C4   SING  N  N  32  
KU5  C8   C13  DOUB  Y  N  33  
KU5  C8   C9   SING  Y  N  34  
KU5  C13  C12  SING  Y  N  35  
KU5  C15  C16  SING  N  N  36  
KU5  N1   C4   SING  N  N  37  
KU5  C4   O1   DOUB  N  N  38  
KU5  C9   C10  DOUB  Y  N  39  
KU5  C12  C11  DOUB  Y  N  40  
KU5  C10  C11  SING  Y  N  41  
KU5  C10  H1   SING  N  N  42  
KU5  C11  H2   SING  N  N  43  
KU5  C12  H3   SING  N  N  44  
KU5  C13  H4   SING  N  N  45  
KU5  C14  H5   SING  N  N  46  
KU5  C15  H6   SING  N  N  47  
KU5  C15  H7   SING  N  N  48  
KU5  C16  H8   SING  N  N  49  
KU5  C16  H9   SING  N  N  50  
KU5  C17  H10  SING  N  N  51  
KU5  C17  H11  SING  N  N  52  
KU5  C19  H12  SING  N  N  53  
KU5  C19  H13  SING  N  N  54  
KU5  C21  H14  SING  N  N  55  
KU5  C22  H15  SING  N  N  56  
KU5  C23  H16  SING  N  N  57  
KU5  C24  H17  SING  N  N  58  
KU5  C6   H18  SING  N  N  59  
KU5  C6   H19  SING  N  N  60  
KU5  C7   H20  SING  N  N  61  
KU5  C7   H21  SING  N  N  62  
KU5  C9   H22  SING  N  N  63  
KU5  N1   H23  SING  N  N  64  
KU5  N3   H24  SING  N  N  65  
KU5  O2   H25  SING  N  N  66  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
KU5  SMILES            ACDLabs               12.01  "C=2(NC(C(=C(C(=O)NCCS(c1ccccc1)(=O)=O)N=2)O)=O)C3CCCN3C(CSc4ccccc4Cl)=O"  
KU5  InChI             InChI                 1.03   "InChI=1S/C25H25ClN4O6S2/c26-17-9-4-5-11-19(17)37-15-20(31)30-13-6-10-18(30)23-28-21(22(32)25(34)29-23)24(33)27-12-14-38(35,36)16-7-2-1-3-8-16/h1-5,7-9,11,18,32H,6,10,12-15H2,(H,27,33)(H,28,29,34)/t18-/m0/s1"  
KU5  InChIKey          InChI                 1.03   QBUADGUVTJBDDK-SFHVURJKSA-N  
KU5  SMILES_CANONICAL  CACTVS                3.385  "OC1=C(N=C(NC1=O)[C@@H]2CCCN2C(=O)CSc3ccccc3Cl)C(=O)NCC[S](=O)(=O)c4ccccc4"  
KU5  SMILES            CACTVS                3.385  "OC1=C(N=C(NC1=O)[CH]2CCCN2C(=O)CSc3ccccc3Cl)C(=O)NCC[S](=O)(=O)c4ccccc4"  
KU5  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.6  "c1ccc(cc1)S(=O)(=O)CCNC(=O)C2=C(C(=O)NC(=N2)[C@@H]3CCCN3C(=O)CSc4ccccc4Cl)O"  
KU5  SMILES            "OpenEye OEToolkits"  2.0.6  "c1ccc(cc1)S(=O)(=O)CCNC(=O)C2=C(C(=O)NC(=N2)C3CCCN3C(=O)CSc4ccccc4Cl)O"  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
KU5  "SYSTEMATIC NAME"  ACDLabs               12.01  "2-[(2S)-1-{[(2-chlorophenyl)sulfanyl]acetyl}pyrrolidin-2-yl]-5-hydroxy-6-oxo-N-[2-(phenylsulfonyl)ethyl]-1,6-dihydropyrimidine-4-carboxamide"  
KU5  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  2.0.6  "2-[(2~{S})-1-[2-(2-chlorophenyl)sulfanylethanoyl]pyrrolidin-2-yl]-5-oxidanyl-6-oxidanylidene-~{N}-[2-(phenylsulfonyl)ethyl]-1~{H}-pyrimidine-4-carboxamide"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
KU5  "Create component"  2017-07-11  RCSB  
KU5  "Initial release"   2018-01-03  RCSB  
KU5  "Modify synonyms"   2021-03-01  PDBE  
#
_pdbx_chem_comp_synonyms.ordinal     1
_pdbx_chem_comp_synonyms.comp_id     KU5
_pdbx_chem_comp_synonyms.name        SRI-30024
_pdbx_chem_comp_synonyms.provenance  ?
_pdbx_chem_comp_synonyms.type        ?
##
