data_KP5
#

_chem_comp.id                                   KP5
_chem_comp.name                                 "(2~{S},3~{R},4~{S},5~{S},6~{R})-2-[(2~{S},3~{R},4~{S},5~{R},6~{R})-4-[4-(2-fluorophenyl)-1,2,3-triazol-1-yl]-6-(hydroxymethyl)-3,5-bis(oxidanyl)oxan-2-yl]sulfanyl-6-(hydroxymethyl)oxane-3,4,5-triol"
_chem_comp.type                                 NON-POLYMER
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C20 H26 F N3 O9 S"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        ?
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2019-06-13
_chem_comp.pdbx_modified_date                   2020-07-03
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       503.499
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    KP5
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       6RZF
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 EBI
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
KP5  C10   C1   C  0  1  N  N  N  -20.551   5.515  -0.286   0.633  -2.971  -2.485  C10   KP5   1  
KP5  C17   C2   C  0  1  Y  N  N  -14.409   8.521  -0.962  -4.730  -0.141   0.442  C17   KP5   2  
KP5  C20   C3   C  0  1  Y  N  N  -10.856   9.601  -0.247  -6.744   2.707  -0.961  C20   KP5   3  
KP5  C21   C4   C  0  1  Y  N  N  -10.774   9.468   1.134  -8.005   2.415  -0.473  C21   KP5   4  
KP5  C22   C5   C  0  1  Y  N  N  -11.864   9.044   1.825  -8.204   1.300   0.319  C22   KP5   5  
KP5  C02   C6   C  0  1  N  N  N  -24.984  10.397  -4.186   5.610  -1.064   2.296  C02   KP5   6  
KP5  C03   C7   C  0  1  N  N  R  -24.698   9.903  -2.762   5.298  -0.369   0.969  C03   KP5   7  
KP5  C05   C8   C  0  1  N  N  S  -22.953   9.784  -1.124   3.549   0.766  -0.216  C05   KP5   8  
KP5  C07   C9   C  0  1  N  N  S  -20.208   8.999  -1.520   0.919  -0.267   0.067  C07   KP5   9  
KP5  C09   C10  C  0  1  N  N  R  -19.895   6.755  -1.108   0.398  -2.269  -1.146  C09   KP5  10  
KP5  C12   C11  C  0  1  N  N  R  -18.438   6.864  -0.934  -1.104  -2.065  -0.934  C12   KP5  11  
KP5  C14   C12  C  0  1  N  N  S  -17.948   8.061  -1.798  -1.328  -1.308   0.379  C14   KP5  12  
KP5  C16   C13  C  0  1  Y  N  N  -15.742   8.560  -0.507  -3.437   0.004   0.029  C16   KP5  13  
KP5  C18   C14  C  0  1  Y  N  N  -13.158   8.835  -0.273  -5.871   0.755   0.129  C18   KP5  14  
KP5  C19   C15  C  0  1  Y  N  N  -12.030   9.291  -0.944  -5.677   1.883  -0.664  C19   KP5  15  
KP5  C23   C16  C  0  1  Y  N  N  -13.035   8.712   1.116  -7.143   0.470   0.628  C23   KP5  16  
KP5  C27   C17  C  0  1  N  N  R  -18.722   9.315  -1.431  -0.563   0.018   0.328  C27   KP5  17  
KP5  C29   C18  C  0  1  N  N  R  -23.803  10.195   0.021   4.441   1.985  -0.464  C29   KP5  18  
KP5  C31   C19  C  0  1  N  N  S  -25.270   9.809  -0.289   5.903   1.532  -0.531  C31   KP5  19  
KP5  C33   C20  C  0  1  N  N  S  -25.737  10.324  -1.678   6.260   0.804   0.769  C33   KP5  20  
KP5  F24   F1   F  0  1  N  N  N  -14.063   8.311   1.769  -7.339  -0.622   1.398  F24   KP5  21  
KP5  N15   N1   N  0  1  Y  N  N  -16.521   8.227  -1.632  -2.758  -1.042   0.553  N15   KP5  22  
KP5  N25   N2   N  0  1  Y  N  N  -14.485   8.144  -2.319  -4.764  -1.263   1.184  N25   KP5  23  
KP5  N26   N3   N  0  1  Y  N  N  -15.686   7.954  -2.682  -3.580  -1.763   1.231  N26   KP5  24  
KP5  O01   O1   O  0  1  N  N  N  -24.915  11.789  -4.173   4.789  -2.227   2.429  O01   KP5  25  
KP5  O04   O2   O  0  1  N  N  N  -23.404  10.343  -2.351   3.954   0.118   0.991  O04   KP5  26  
KP5  O08   O3   O  0  1  N  N  N  -20.580   7.859  -0.780   1.054  -0.999  -1.152  O08   KP5  27  
KP5  O11   O4   O  0  1  N  N  N  -21.887   5.410  -0.483   2.024  -3.266  -2.630  O11   KP5  28  
KP5  O13   O5   O  0  1  N  N  N  -18.140   7.165   0.410  -1.641  -1.306  -2.020  O13   KP5  29  
KP5  O28   O6   O  0  1  N  N  N  -18.436  10.280  -2.418  -0.705   0.700   1.576  O28   KP5  30  
KP5  O30   O7   O  0  1  N  N  N  -23.390   9.555   1.186   4.075   2.601  -1.701  O30   KP5  31  
KP5  O32   O8   O  0  1  N  N  N  -26.109  10.427   0.663   6.750   2.672  -0.688  O32   KP5  32  
KP5  O34   O9   O  0  1  N  N  N  -26.985   9.740  -1.989   7.600   0.315   0.689  O34   KP5  33  
KP5  S06   S1   S  0  1  N  N  N  -21.216  10.372  -0.883   1.822   1.301  -0.065  S06   KP5  34  
KP5  H101  H1   H  0  0  N  N  N  -20.072   4.581  -0.615   0.060  -3.898  -2.515  H101  KP5  35  
KP5  H102  H2   H  0  0  N  N  N  -20.364   5.665   0.787   0.313  -2.320  -3.298  H102  KP5  36  
KP5  H201  H3   H  0  0  N  N  N   -9.994   9.952  -0.795  -6.595   3.580  -1.580  H201  KP5  37  
KP5  H211  H4   H  0  0  N  N  N   -9.855   9.699   1.652  -8.837   3.061  -0.712  H211  KP5  38  
KP5  H221  H5   H  0  0  N  N  N  -11.833   8.963   2.901  -9.191   1.077   0.698  H221  KP5  39  
KP5  H022  H6   H  0  0  N  N  N  -25.988  10.074  -4.500   6.660  -1.357   2.314  H022  KP5  40  
KP5  H021  H7   H  0  0  N  N  N  -24.234   9.991  -4.881   5.408  -0.381   3.121  H021  KP5  41  
KP5  H031  H8   H  0  0  N  N  N  -24.698   8.803  -2.794   5.414  -1.079   0.150  H031  KP5  42  
KP5  H051  H9   H  0  0  N  N  N  -22.899   8.687  -1.183   3.642   0.071  -1.051  H051  KP5  43  
KP5  H071  H10  H  0  0  N  N  N  -20.489   8.885  -2.577   1.327  -0.853   0.891  H071  KP5  44  
KP5  H091  H11  H  0  0  N  N  N  -20.076   6.529  -2.169   0.799  -2.881  -0.339  H091  KP5  45  
KP5  H121  H12  H  0  0  N  N  N  -17.937   5.942  -1.264  -1.600  -3.034  -0.886  H121  KP5  46  
KP5  H141  H13  H  0  0  N  N  N  -18.162   7.823  -2.850  -0.964  -1.907   1.214  H141  KP5  47  
KP5  H161  H14  H  0  0  N  N  N  -16.090   8.794   0.488  -3.037   0.793  -0.591  H161  KP5  48  
KP5  H191  H15  H  0  0  N  N  N  -12.059   9.408  -2.017  -4.695   2.108  -1.054  H191  KP5  49  
KP5  H271  H16  H  0  0  N  N  N  -18.456   9.656  -0.420  -0.961   0.638  -0.474  H271  KP5  50  
KP5  H291  H17  H  0  0  N  N  N  -23.748  11.287   0.140   4.316   2.699   0.350  H291  KP5  51  
KP5  H311  H18  H  0  0  N  N  N  -25.371   8.714  -0.257   6.038   0.858  -1.376  H311  KP5  52  
KP5  H331  H19  H  0  0  N  N  N  -25.807  11.421  -1.652   6.173   1.494   1.609  H331  KP5  53  
KP5  H011  H20  H  0  0  N  N  N  -25.089  12.123  -5.045   4.934  -2.719   3.249  H011  KP5  54  
KP5  H111  H21  H  0  0  N  N  N  -22.224   4.675   0.015   2.247  -3.713  -3.458  H111  KP5  55  
KP5  H131  H22  H  0  0  N  N  N  -18.428   6.451   0.966  -1.530  -1.725  -2.884  H131  KP5  56  
KP5  H281  H23  H  0  0  N  N  N  -18.905  11.083  -2.222  -0.241   1.547   1.617  H281  KP5  57  
KP5  H301  H24  H  0  0  N  N  N  -23.942   9.827   1.910   3.159   2.908  -1.731  H301  KP5  58  
KP5  H321  H25  H  0  0  N  N  N  -25.862  10.143   1.535   6.574   3.185  -1.489  H321  KP5  59  
KP5  H341  H26  H  0  0  N  N  N  -27.625   9.991  -1.333   8.265   1.005   0.562  H341  KP5  60  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
KP5  C02  O01   SING  N  N   1  
KP5  C02  C03   SING  N  N   2  
KP5  C03  O04   SING  N  N   3  
KP5  C03  C33   SING  N  N   4  
KP5  N26  N25   DOUB  Y  N   5  
KP5  N26  N15   SING  Y  N   6  
KP5  O28  C27   SING  N  N   7  
KP5  O04  C05   SING  N  N   8  
KP5  N25  C17   SING  Y  N   9  
KP5  O34  C33   SING  N  N  10  
KP5  C14  N15   SING  N  N  11  
KP5  C14  C27   SING  N  N  12  
KP5  C14  C12   SING  N  N  13  
KP5  C33  C31   SING  N  N  14  
KP5  N15  C16   SING  Y  N  15  
KP5  C07  C27   SING  N  N  16  
KP5  C07  S06   SING  N  N  17  
KP5  C07  O08   SING  N  N  18  
KP5  C05  S06   SING  N  N  19  
KP5  C05  C29   SING  N  N  20  
KP5  C09  C12   SING  N  N  21  
KP5  C09  O08   SING  N  N  22  
KP5  C09  C10   SING  N  N  23  
KP5  C17  C16   DOUB  Y  N  24  
KP5  C17  C18   SING  N  N  25  
KP5  C19  C18   DOUB  Y  N  26  
KP5  C19  C20   SING  Y  N  27  
KP5  C12  O13   SING  N  N  28  
KP5  O11  C10   SING  N  N  29  
KP5  C31  C29   SING  N  N  30  
KP5  C31  O32   SING  N  N  31  
KP5  C18  C23   SING  Y  N  32  
KP5  C20  C21   DOUB  Y  N  33  
KP5  C29  O30   SING  N  N  34  
KP5  C23  F24   SING  N  N  35  
KP5  C23  C22   DOUB  Y  N  36  
KP5  C21  C22   SING  Y  N  37  
KP5  C10  H101  SING  N  N  38  
KP5  C10  H102  SING  N  N  39  
KP5  C20  H201  SING  N  N  40  
KP5  C21  H211  SING  N  N  41  
KP5  C22  H221  SING  N  N  42  
KP5  C02  H022  SING  N  N  43  
KP5  C02  H021  SING  N  N  44  
KP5  C03  H031  SING  N  N  45  
KP5  C05  H051  SING  N  N  46  
KP5  C07  H071  SING  N  N  47  
KP5  C09  H091  SING  N  N  48  
KP5  C12  H121  SING  N  N  49  
KP5  C14  H141  SING  N  N  50  
KP5  C16  H161  SING  N  N  51  
KP5  C19  H191  SING  N  N  52  
KP5  C27  H271  SING  N  N  53  
KP5  C29  H291  SING  N  N  54  
KP5  C31  H311  SING  N  N  55  
KP5  C33  H331  SING  N  N  56  
KP5  O01  H011  SING  N  N  57  
KP5  O11  H111  SING  N  N  58  
KP5  O13  H131  SING  N  N  59  
KP5  O28  H281  SING  N  N  60  
KP5  O30  H301  SING  N  N  61  
KP5  O32  H321  SING  N  N  62  
KP5  O34  H341  SING  N  N  63  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
KP5  InChI             InChI                 1.03   "InChI=1S/C20H26FN3O9S/c21-9-4-2-1-3-8(9)10-5-24(23-22-10)13-14(27)11(6-25)32-19(16(13)29)34-20-18(31)17(30)15(28)12(7-26)33-20/h1-5,11-20,25-31H,6-7H2/t11-,12-,13+,14+,15-,16-,17+,18-,19+,20+/m1/s1"  
KP5  InChIKey          InChI                 1.03   YTGURWPREJHRAC-CPMKIQJPSA-N  
KP5  SMILES_CANONICAL  CACTVS                3.385  "OC[C@H]1O[C@@H](S[C@@H]2O[C@H](CO)[C@H](O)[C@@H]([C@H]2O)n3cc(nn3)c4ccccc4F)[C@H](O)[C@@H](O)[C@@H]1O"  
KP5  SMILES            CACTVS                3.385  "OC[CH]1O[CH](S[CH]2O[CH](CO)[CH](O)[CH]([CH]2O)n3cc(nn3)c4ccccc4F)[CH](O)[CH](O)[CH]1O"  
KP5  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.7  "c1ccc(c(c1)c2cn(nn2)[C@H]3[C@H]([C@H](O[C@H]([C@@H]3O)S[C@H]4[C@@H]([C@H]([C@@H]([C@H](O4)CO)O)O)O)CO)O)F"  
KP5  SMILES            "OpenEye OEToolkits"  2.0.7  "c1ccc(c(c1)c2cn(nn2)C3C(C(OC(C3O)SC4C(C(C(C(O4)CO)O)O)O)CO)O)F"  
#
_pdbx_chem_comp_identifier.comp_id          KP5
_pdbx_chem_comp_identifier.type             "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program          "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version  2.0.7
_pdbx_chem_comp_identifier.identifier       "(2~{S},3~{R},4~{S},5~{S},6~{R})-2-[(2~{S},3~{R},4~{S},5~{R},6~{R})-4-[4-(2-fluorophenyl)-1,2,3-triazol-1-yl]-6-(hydroxymethyl)-3,5-bis(oxidanyl)oxan-2-yl]sulfanyl-6-(hydroxymethyl)oxane-3,4,5-triol"
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
KP5  "Create component"  2019-06-13  EBI   
KP5  "Initial release"   2020-07-08  RCSB  
##
