data_KD5
#

_chem_comp.id                                   KD5
_chem_comp.name                                 "4,7-anhydro-3-deoxy-D-manno-oct-2-ulosonic acid"
_chem_comp.type                                 D-saccharide
_chem_comp.pdbx_type                            ATOMS
_chem_comp.formula                              "C8 H12 O7"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        ?
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2012-03-22
_chem_comp.pdbx_modified_date                   2020-07-17
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       220.177
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    KD5
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  Y
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       4E52
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
KD5  O5    O5   O  0  1  N  Y  N  29.549  19.518  -27.487   1.783  -2.603  -1.007  O5    KD5   1  
KD5  C4    C4   C  0  1  N  N  R  30.669  17.526  -26.312   0.229  -0.760  -0.626  C4    KD5   2  
KD5  C5    C5   C  0  1  N  N  S  29.565  18.182  -27.136   1.376  -1.617  -0.057  C5    KD5   3  
KD5  C6    C6   C  0  1  N  N  S  29.454  17.364  -28.424   2.519  -0.603   0.194  C6    KD5   4  
KD5  O6    O6   O  0  1  N  N  N  28.481  16.310  -28.409   3.182  -0.877   1.430  O6    KD5   5  
KD5  C7    C7   C  0  1  N  N  R  30.876  16.854  -28.535   1.750   0.741   0.266  C7    KD5   6  
KD5  O7    O7   O  0  1  N  N  N  31.606  17.373  -27.385   0.710   0.591  -0.727  O7    KD5   7  
KD5  O8    O8   O  0  1  N  N  N  31.350  18.724  -30.032   1.974   3.142   0.095  O8    KD5   8  
KD5  C8    C8   C  0  1  N  N  N  31.424  17.322  -29.879   2.673   1.909  -0.091  C8    KD5   9  
KD5  HO5   H1   H  0  1  N  Y  N  29.617  20.052  -26.704   2.503  -3.171  -0.701  HO5   KD5  10  
KD5  H4    H2   H  0  1  N  N  N  31.024  18.170  -25.494  -0.054  -1.127  -1.612  H4    KD5  11  
KD5  H5    H4   H  0  1  N  N  N  28.634  17.983  -26.585   1.072  -2.090   0.877  H5    KD5  12  
KD5  H6    H5   H  0  1  N  N  N  29.254  18.049  -29.261   3.228  -0.603  -0.634  H6    KD5  13  
KD5  HO6   H6   H  0  1  N  N  N  27.610  16.683  -28.338   3.906  -0.269   1.632  HO6   KD5  14  
KD5  H7    H7   H  0  1  N  N  N  30.870  15.754  -28.512   1.316   0.883   1.256  H7    KD5  15  
KD5  HO8   H8   H  0  1  N  N  N  31.701  18.969  -30.880   2.499   3.926  -0.114  HO8   KD5  16  
KD5  H81   H9   H  0  1  N  N  N  30.841  16.848  -30.683   3.551   1.888   0.553  H81   KD5  17  
KD5  H82   H10  H  0  1  N  N  N  32.477  17.013  -29.958   2.984   1.821  -1.132  H82   KD5  18  
KD5  C3    C3   C  0  1  N  N  N       ?       ?        ?  -0.977  -0.813   0.315  C3    KD5  19  
KD5  C2    C2   C  0  1  N  N  N       ?       ?        ?  -2.131  -0.068  -0.305  C2    KD5  20  
KD5  C1    C1   C  0  1  N  N  N       ?       ?        ?  -3.431   0.027   0.418  C1    KD5  21  
KD5  O2    O2   O  0  1  N  N  N       ?       ?        ?  -2.002   0.453  -1.387  O2    KD5  22  
KD5  O1B   OH   O  0  1  N  N  N       ?       ?        ?  -4.461   0.693  -0.135  O1B   KD5  23  
KD5  O1A   O1   O  0  1  N  N  N       ?       ?        ?  -3.560  -0.496   1.505  O1A   KD5  24  
KD5  H31   H3   H  0  1  N  N  N       ?       ?        ?  -1.262  -1.852   0.481  H31   KD5  25  
KD5  H32   H11  H  0  1  N  N  N       ?       ?        ?  -0.715  -0.352   1.267  H32   KD5  26  
KD5  HO1B  H17  H  0  0  N  N  N       ?       ?        ?  -5.284   0.727   0.371  HO1B  KD5  27  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
KD5  O8   C8    SING  N  N   1  
KD5  C8   C7    SING  N  N   2  
KD5  C7   C6    SING  N  N   3  
KD5  C7   O7    SING  N  N   4  
KD5  C6   O6    SING  N  N   5  
KD5  C6   C5    SING  N  N   6  
KD5  O5   C5    SING  N  N   7  
KD5  O7   C4    SING  N  N   8  
KD5  C5   C4    SING  N  N   9  
KD5  O5   HO5   SING  N  N  10  
KD5  C4   H4    SING  N  N  11  
KD5  C5   H5    SING  N  N  12  
KD5  C6   H6    SING  N  N  13  
KD5  O6   HO6   SING  N  N  14  
KD5  C7   H7    SING  N  N  15  
KD5  O8   HO8   SING  N  N  16  
KD5  C8   H81   SING  N  N  17  
KD5  C8   H82   SING  N  N  18  
KD5  C4   C3    SING  N  N  19  
KD5  C3   C2    SING  N  N  20  
KD5  C2   C1    SING  N  N  21  
KD5  C2   O2    DOUB  N  N  22  
KD5  C1   O1B   SING  N  N  23  
KD5  C1   O1A   DOUB  N  N  24  
KD5  C3   H31   SING  N  N  25  
KD5  C3   H32   SING  N  N  26  
KD5  O1B  HO1B  SING  N  N  27  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
KD5  SMILES            ACDLabs               12.01  "O=C(O)C(=O)CC1OC(CO)C(O)C1O"  
KD5  InChI             InChI                 1.03   "InChI=1S/C8H12O7/c9-2-5-7(12)6(11)4(15-5)1-3(10)8(13)14/h4-7,9,11-12H,1-2H2,(H,13,14)/t4?,5-,6-,7-/m1/s1"  
KD5  InChIKey          InChI                 1.03   HVHHMEMCULPBED-UVSCYPECSA-N  
KD5  SMILES_CANONICAL  CACTVS                3.370  "OC[C@H]1O[C@H](CC(=O)C(O)=O)[C@@H](O)[C@@H]1O"  
KD5  SMILES            CACTVS                3.370  "OC[CH]1O[CH](CC(=O)C(O)=O)[CH](O)[CH]1O"  
KD5  SMILES_CANONICAL  "OpenEye OEToolkits"  1.7.6  "C([C@@H]1[C@H]([C@@H]([C@H](O1)CO)O)O)C(=O)C(=O)O"  
KD5  SMILES            "OpenEye OEToolkits"  1.7.6  "C(C1C(C(C(O1)CO)O)O)C(=O)C(=O)O"  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
KD5  "SYSTEMATIC NAME"  ACDLabs               12.01  "4,7-anhydro-3-deoxy-D-manno-oct-2-ulosonic acid"  
KD5  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  1.7.6  "3-[(2R,3S,4S,5R)-5-(hydroxymethyl)-3,4-bis(oxidanyl)oxolan-2-yl]-2-oxidanylidene-propanoic acid"  
#   #
loop_
_pdbx_chem_comp_feature.comp_id
_pdbx_chem_comp_feature.type
_pdbx_chem_comp_feature.value
_pdbx_chem_comp_feature.source
_pdbx_chem_comp_feature.support
KD5  "CARBOHYDRATE ISOMER"  D         PDB  ?  
KD5  "CARBOHYDRATE RING"    furanose  PDB  ?  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
KD5  "Create component"          2012-03-22  RCSB  
KD5  "Initial release"           2013-03-27  RCSB  
KD5  "Other modification"        2020-07-03  RCSB  
KD5  "Modify internal type"      2020-07-17  RCSB  
KD5  "Modify linking type"       2020-07-17  RCSB  
KD5  "Modify atom id"            2020-07-17  RCSB  
KD5  "Modify component atom id"  2020-07-17  RCSB  
##
