data_JY5
#

_chem_comp.id                                   JY5
_chem_comp.name                                 "3-[6-azanyl-9-[(2~{R})-oxan-2-yl]purin-8-yl]prop-2-yn-1-ol"
_chem_comp.type                                 NON-POLYMER
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C13 H15 N5 O2"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        ?
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2019-04-11
_chem_comp.pdbx_modified_date                   2020-02-14
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       273.291
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    JY5
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       6RC6
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 EBI
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
JY5  CAQ  C1   C  0  1  N  N  N  16.648  11.013  12.829   1.114   1.630   0.185  CAQ  JY5   1  
JY5  CAR  C2   C  0  1  N  N  N  15.453  10.791  12.963   2.164   2.153   0.242  CAR  JY5   2  
JY5  CAS  C3   C  0  1  N  N  N  14.020  10.520  13.128   3.480   2.809   0.313  CAS  JY5   3  
JY5  C2   C4   C  0  1  Y  N  N  22.445  11.474  12.408  -3.819  -1.519  -0.087  C2   JY5   4  
JY5  C4   C5   C  0  1  Y  N  N  20.187  11.081  12.657  -1.728  -0.571   0.026  C4   JY5   5  
JY5  C5   C6   C  0  1  Y  N  N  19.863  12.346  12.191  -2.318   0.706   0.005  C5   JY5   6  
JY5  C6   C7   C  0  1  Y  N  N  20.883  13.212  11.816  -3.722   0.787  -0.055  C6   JY5   7  
JY5  C8   C8   C  0  1  Y  N  N  18.043  11.284  12.667  -0.166   0.992   0.116  C8   JY5   8  
JY5  CAK  C9   C  0  1  N  N  R  19.041   9.063  13.461   0.660  -1.403   0.143  CAK  JY5   9  
JY5  CAL  C10  C  0  1  N  N  N  18.760   9.053  14.966   1.356  -1.492  -1.218  CAL  JY5  10  
JY5  CAM  C11  C  0  1  N  N  N  18.750   7.611  15.462   2.474  -2.536  -1.144  CAM  JY5  11  
JY5  CAN  C12  C  0  1  N  N  N  17.656   6.860  14.715   3.442  -2.152  -0.021  CAN  JY5  12  
JY5  CAO  C13  C  0  1  N  N  N  17.985   6.922  13.223   2.667  -2.037   1.294  CAO  JY5  13  
JY5  N1   N1   N  0  1  Y  N  N  22.199  12.766  11.929  -4.420  -0.343  -0.104  N1   JY5  14  
JY5  N3   N2   N  0  1  Y  N  N  21.460  10.677  12.758  -2.510  -1.644  -0.021  N3   JY5  15  
JY5  N6   N3   N  0  1  N  N  N  20.622  14.434  11.363  -4.360   2.015  -0.074  N6   JY5  16  
JY5  N7   N4   N  0  1  Y  N  N  18.537  12.437  12.212  -1.320   1.614   0.061  N7   JY5  17  
JY5  N9   N5   N  0  1  Y  N  N  19.059  10.457  12.945  -0.373  -0.366   0.097  N9   JY5  18  
JY5  OAP  O1   O  0  1  N  N  N  18.035   8.291  12.760   1.622  -1.072   1.147  OAP  JY5  19  
JY5  OAT  O2   O  0  1  N  N  N  13.383  10.487  11.848   4.265   2.426  -0.818  OAT  JY5  20  
JY5  H1   H1   H  0  1  N  N  N  13.567  11.313  13.741   3.346   3.891   0.313  H1   JY5  21  
JY5  H2   H2   H  0  1  N  N  N  13.887   9.549  13.627   3.988   2.506   1.228  H2   JY5  22  
JY5  H3   H3   H  0  1  N  N  N  23.464  11.125  12.492  -4.425  -2.412  -0.123  H3   JY5  23  
JY5  H4   H4   H  0  1  N  N  N  20.029   8.610  13.293   0.202  -2.362   0.380  H4   JY5  24  
JY5  H5   H5   H  0  1  N  N  N  19.545   9.618  15.491   0.632  -1.787  -1.978  H5   JY5  25  
JY5  H6   H6   H  0  1  N  N  N  17.782   9.516  15.161   1.780  -0.521  -1.475  H6   JY5  26  
JY5  H7   H7   H  0  1  N  N  N  18.545   7.590  16.543   2.045  -3.516  -0.936  H7   JY5  27  
JY5  H8   H8   H  0  1  N  N  N  19.725   7.142  15.264   3.009  -2.566  -2.094  H8   JY5  28  
JY5  H9   H9   H  0  1  N  N  N  16.681   7.333  14.904   4.211  -2.918   0.075  H9   JY5  29  
JY5  H10  H10  H  0  1  N  N  N  17.626   5.812  15.049   3.909  -1.195  -0.254  H10  JY5  30  
JY5  H11  H11  H  0  1  N  N  N  17.210   6.380  12.661   2.234  -3.005   1.546  H11  JY5  31  
JY5  H12  H12  H  0  1  N  N  N  18.962   6.448  13.050   3.343  -1.722   2.089  H12  JY5  32  
JY5  H13  H13  H  0  1  N  N  N  21.480  14.901  11.149  -5.328   2.057  -0.124  H13  JY5  33  
JY5  H14  H14  H  0  1  N  N  N  20.062  14.371  10.537  -3.840   2.832  -0.038  H14  JY5  34  
JY5  H15  H15  H  0  1  N  N  N  12.456  10.311  11.960   5.147   2.822  -0.837  H15  JY5  35  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
JY5  N6   C6   SING  N  N   1  
JY5  C6   N1   DOUB  Y  N   2  
JY5  C6   C5   SING  Y  N   3  
JY5  OAT  CAS  SING  N  N   4  
JY5  N1   C2   SING  Y  N   5  
JY5  C5   N7   SING  Y  N   6  
JY5  C5   C4   DOUB  Y  N   7  
JY5  N7   C8   DOUB  Y  N   8  
JY5  C2   N3   DOUB  Y  N   9  
JY5  C4   N3   SING  Y  N  10  
JY5  C4   N9   SING  Y  N  11  
JY5  C8   CAQ  SING  N  N  12  
JY5  C8   N9   SING  Y  N  13  
JY5  OAP  CAO  SING  N  N  14  
JY5  OAP  CAK  SING  N  N  15  
JY5  CAQ  CAR  TRIP  N  N  16  
JY5  N9   CAK  SING  N  N  17  
JY5  CAR  CAS  SING  N  N  18  
JY5  CAO  CAN  SING  N  N  19  
JY5  CAK  CAL  SING  N  N  20  
JY5  CAN  CAM  SING  N  N  21  
JY5  CAL  CAM  SING  N  N  22  
JY5  CAS  H1   SING  N  N  23  
JY5  CAS  H2   SING  N  N  24  
JY5  C2   H3   SING  N  N  25  
JY5  CAK  H4   SING  N  N  26  
JY5  CAL  H5   SING  N  N  27  
JY5  CAL  H6   SING  N  N  28  
JY5  CAM  H7   SING  N  N  29  
JY5  CAM  H8   SING  N  N  30  
JY5  CAN  H9   SING  N  N  31  
JY5  CAN  H10  SING  N  N  32  
JY5  CAO  H11  SING  N  N  33  
JY5  CAO  H12  SING  N  N  34  
JY5  N6   H13  SING  N  N  35  
JY5  N6   H14  SING  N  N  36  
JY5  OAT  H15  SING  N  N  37  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
JY5  InChI             InChI                 1.03   "InChI=1S/C13H15N5O2/c14-12-11-13(16-8-15-12)18(9(17-11)4-3-6-19)10-5-1-2-7-20-10/h8,10,19H,1-2,5-7H2,(H2,14,15,16)/t10-/m1/s1"  
JY5  InChIKey          InChI                 1.03   AVGMEYBYAVAZNQ-SNVBAGLBSA-N  
JY5  SMILES_CANONICAL  CACTVS                3.385  "Nc1ncnc2n([C@H]3CCCCO3)c(nc12)C#CCO"  
JY5  SMILES            CACTVS                3.385  "Nc1ncnc2n([CH]3CCCCO3)c(nc12)C#CCO"  
JY5  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.7  "c1nc(c2c(n1)n(c(n2)C#CCO)[C@H]3CCCCO3)N"  
JY5  SMILES            "OpenEye OEToolkits"  2.0.7  "c1nc(c2c(n1)n(c(n2)C#CCO)C3CCCCO3)N"  
#
_pdbx_chem_comp_identifier.comp_id          JY5
_pdbx_chem_comp_identifier.type             "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program          "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version  2.0.7
_pdbx_chem_comp_identifier.identifier       "3-[6-azanyl-9-[(2~{R})-oxan-2-yl]purin-8-yl]prop-2-yn-1-ol"
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
JY5  "Create component"  2019-04-11  EBI   
JY5  "Initial release"   2020-02-19  RCSB  
##
