data_JP5
#

_chem_comp.id                                   JP5
_chem_comp.name                                 "(phenylmethyl) ~{N}-[(3~{S})-2,5-bis(oxidanylidene)pyrrolidin-3-yl]carbamate"
_chem_comp.type                                 NON-POLYMER
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C12 H12 N2 O4"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        ?
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2019-03-14
_chem_comp.pdbx_modified_date                   2019-08-02
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       248.235
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    JP5
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       6R1D
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
JP5  O    O1   O  0  1  N  N  N   8.021   5.375  2.957   2.776  -2.022   0.451  O    JP5   1  
JP5  C    C1   C  0  1  N  N  N   8.083   4.715  3.988   3.220  -0.913   0.246  C    JP5   2  
JP5  ND2  N1   N  0  1  N  N  N   7.695   3.406  4.062   4.324  -0.404   0.808  ND2  JP5   3  
JP5  CG   C2   C  0  1  N  N  N   7.781   2.914  5.328   4.615   0.845   0.424  CG   JP5   4  
JP5  OD1  O2   O  0  1  N  N  N   7.528   1.792  5.645   5.565   1.493   0.807  OD1  JP5   5  
JP5  CB   C3   C  0  1  N  N  N   8.248   4.009  6.275   3.571   1.319  -0.563  CB   JP5   6  
JP5  CA   C4   C  0  1  N  N  S   8.627   5.129  5.307   2.618   0.113  -0.689  CA   JP5   7  
JP5  N    N2   N  0  1  N  N  N   8.209   6.462  5.689   1.268   0.478  -0.255  N    JP5   8  
JP5  CAI  C5   C  0  1  N  N  N   8.892   7.505  5.406   0.210  -0.256  -0.654  CAI  JP5   9  
JP5  OAK  O3   O  0  1  N  N  N  10.045   7.519  4.925   0.377  -1.220  -1.375  OAK  JP5  10  
JP5  OAJ  O4   O  0  1  N  N  N   8.241   8.661  5.688  -1.031   0.079  -0.255  OAJ  JP5  11  
JP5  CAL  C6   C  0  1  N  N  N   8.858   9.938  5.528  -2.122  -0.756  -0.724  CAL  JP5  12  
JP5  CAM  C7   C  0  1  Y  N  N   9.865  10.227  6.568  -3.426  -0.232  -0.179  CAM  JP5  13  
JP5  CAN  C8   C  0  1  Y  N  N  11.167  10.473  6.190  -3.900  -0.687   1.037  CAN  JP5  14  
JP5  CAO  C9   C  0  1  Y  N  N  12.087  10.720  7.060  -5.096  -0.205   1.536  CAO  JP5  15  
JP5  CAP  C10  C  0  1  Y  N  N  11.906  10.869  8.474  -5.818   0.731   0.820  CAP  JP5  16  
JP5  CAQ  C11  C  0  1  Y  N  N  10.543  10.655  8.807  -5.343   1.186  -0.396  CAQ  JP5  17  
JP5  CAR  C12  C  0  1  Y  N  N   9.618  10.277  7.907  -4.145   0.708  -0.894  CAR  JP5  18  
JP5  H1   H1   H  0  1  N  N  N   7.384   2.872  3.276   4.867  -0.899   1.440  H1   JP5  19  
JP5  H2   H2   H  0  1  N  N  N   9.116   3.682  6.867   3.043   2.190  -0.174  H2   JP5  20  
JP5  H3   H3   H  0  1  N  N  N   7.440   4.323  6.952   4.029   1.548  -1.525  H3   JP5  21  
JP5  H4   H4   H  0  1  N  N  N   9.724   5.127  5.227   2.603  -0.263  -1.712  H4   JP5  22  
JP5  H5   H5   H  0  1  N  N  N   7.353   6.571  6.194   1.135   1.247   0.320  H5   JP5  23  
JP5  H6   H6   H  0  1  N  N  N   9.351   9.968  4.545  -2.151  -0.740  -1.813  H6   JP5  24  
JP5  H7   H7   H  0  1  N  N  N   8.078  10.712  5.571  -1.970  -1.780  -0.380  H7   JP5  25  
JP5  H8   H8   H  0  1  N  N  N  11.423  10.459  5.141  -3.336  -1.418   1.597  H8   JP5  26  
JP5  H9   H9   H  0  1  N  N  N  13.094  10.825  6.685  -5.466  -0.561   2.486  H9   JP5  27  
JP5  H10  H10  H  0  1  N  N  N  12.688  11.108  9.179  -6.752   1.106   1.209  H10  JP5  28  
JP5  H11  H11  H  0  1  N  N  N  10.234  10.803  9.831  -5.907   1.917  -0.957  H11  JP5  29  
JP5  H12  H12  H  0  1  N  N  N   8.636  10.001  8.261  -3.773   1.067  -1.842  H12  JP5  30  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
JP5  O    C    DOUB  N  N   1  
JP5  C    ND2  SING  N  N   2  
JP5  C    CA   SING  N  N   3  
JP5  ND2  CG   SING  N  N   4  
JP5  OAK  CAI  DOUB  N  N   5  
JP5  CA   N    SING  N  N   6  
JP5  CA   CB   SING  N  N   7  
JP5  CG   OD1  DOUB  N  N   8  
JP5  CG   CB   SING  N  N   9  
JP5  CAI  OAJ  SING  N  N  10  
JP5  CAI  N    SING  N  N  11  
JP5  CAL  OAJ  SING  N  N  12  
JP5  CAL  CAM  SING  N  N  13  
JP5  CAN  CAM  DOUB  Y  N  14  
JP5  CAN  CAO  SING  Y  N  15  
JP5  CAM  CAR  SING  Y  N  16  
JP5  CAO  CAP  DOUB  Y  N  17  
JP5  CAR  CAQ  DOUB  Y  N  18  
JP5  CAP  CAQ  SING  Y  N  19  
JP5  ND2  H1   SING  N  N  20  
JP5  CB   H2   SING  N  N  21  
JP5  CB   H3   SING  N  N  22  
JP5  CA   H4   SING  N  N  23  
JP5  N    H5   SING  N  N  24  
JP5  CAL  H6   SING  N  N  25  
JP5  CAL  H7   SING  N  N  26  
JP5  CAN  H8   SING  N  N  27  
JP5  CAO  H9   SING  N  N  28  
JP5  CAP  H10  SING  N  N  29  
JP5  CAQ  H11  SING  N  N  30  
JP5  CAR  H12  SING  N  N  31  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
JP5  InChI             InChI                 1.03   "InChI=1S/C12H12N2O4/c15-10-6-9(11(16)14-10)13-12(17)18-7-8-4-2-1-3-5-8/h1-5,9H,6-7H2,(H,13,17)(H,14,15,16)/t9-/m0/s1"  
JP5  InChIKey          InChI                 1.03   QRQMHYISDDHZBY-VIFPVBQESA-N  
JP5  SMILES_CANONICAL  CACTVS                3.385  "O=C1C[C@H](NC(=O)OCc2ccccc2)C(=O)N1"  
JP5  SMILES            CACTVS                3.385  "O=C1C[CH](NC(=O)OCc2ccccc2)C(=O)N1"  
JP5  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.7  "c1ccc(cc1)COC(=O)N[C@H]2CC(=O)NC2=O"  
JP5  SMILES            "OpenEye OEToolkits"  2.0.7  "c1ccc(cc1)COC(=O)NC2CC(=O)NC2=O"  
#
_pdbx_chem_comp_identifier.comp_id          JP5
_pdbx_chem_comp_identifier.type             "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program          "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version  2.0.7
_pdbx_chem_comp_identifier.identifier       "(phenylmethyl) ~{N}-[(3~{S})-2,5-bis(oxidanylidene)pyrrolidin-3-yl]carbamate"
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
JP5  "Create component"  2019-03-14  RCSB  
JP5  "Initial release"   2019-08-07  RCSB  
##
