data_JL5
#

_chem_comp.id                                   JL5
_chem_comp.name                                 "(2~{R})-2-[5-[3-chloranyl-2-methyl-5-(4-methylpiperazin-1-yl)-4-oxidanyl-phenyl]-6-ethyl-thieno[2,3-d]pyrimidin-4-yl]oxy-3-phenyl-propanoic acid"
_chem_comp.type                                 NON-POLYMER
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C29 H31 Cl N4 O4 S"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        ?
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2019-03-09
_chem_comp.pdbx_modified_date                   2019-08-02
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       567.099
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    JL5
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       6QYP
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
JL5  C4   C1   C   0  1  Y  N  N   4.288   0.583  -5.916   1.778   0.719   1.546  C4    JL5   1  
JL5  C8   C2   C   0  1  Y  N  N   5.072   1.565  -6.510   1.493   1.913   0.843  C8    JL5   2  
JL5  N3   N1   N   0  1  Y  N  N   3.738   1.402  -8.442   3.011   3.013   2.273  N3    JL5   3  
JL5  C2   C3   C   0  1  Y  N  N   2.994   0.477  -7.822   3.236   1.881   2.898  C2    JL5   4  
JL5  N1   N2   N   0  1  Y  N  N   3.270   0.051  -6.590   2.639   0.755   2.550  N1    JL5   5  
JL5  C6   C4   C   0  1  Y  N  N   6.690   3.153  -6.903   0.572   3.418  -0.703  C6    JL5   6  
JL5  C12  C5   C   0  1  N  N  R   3.676  -0.839  -4.116   1.459  -1.588   2.007  C12   JL5   7  
JL5  C13  C6   C   0  1  N  N  N   3.913  -0.910  -2.631   1.479  -2.839   1.127  C13   JL5   8  
JL5  C14  C7   C   0  1  N  N  N   3.963  -2.183  -4.807   0.397  -1.735   3.066  C14   JL5   9  
JL5  C7   C8   C   0  1  Y  N  N   6.175   2.246  -6.003   0.597   2.155  -0.281  C7    JL5  10  
JL5  C9   C9   C   0  1  Y  N  N   4.772   1.956  -7.801   2.151   3.076   1.249  C9    JL5  11  
JL5  C10  C10  C   0  1  N  N  N   7.902   4.047  -6.636  -0.273   3.916  -1.847  C10   JL5  12  
JL5  C34  C11  C   0  1  N  N  N   9.862  -0.853  -4.106  -4.369   0.534  -0.381  C34   JL5  13  
JL5  C35  C12  C   0  1  N  N  N  10.627  -2.144  -3.703  -5.732   0.090   0.154  C35   JL5  14  
JL5  N36  N3   N   0  1  N  N  N   9.682  -3.137  -3.206  -5.570  -0.454   1.509  N36   JL5  15  
JL5  C39  C13  C   0  1  N  N  N  10.353  -4.427  -3.010  -6.870  -0.823   2.087  C39   JL5  16  
JL5  C37  C14  C   0  1  N  N  N   9.164  -2.668  -1.932  -4.651  -1.601   1.506  C37   JL5  17  
JL5  C38  C15  C   0  1  N  N  N   8.191  -1.538  -2.174  -3.288  -1.157   0.971  C38   JL5  18  
JL5  N32  N4   N   0  1  N  N  N   8.793  -0.487  -3.074  -3.450  -0.613  -0.384  N32   JL5  19  
JL5  C26  C16  C   0  1  Y  N  N   8.135   0.742  -3.195  -2.212  -0.262  -0.935  C26   JL5  20  
JL5  C28  C17  C   0  1  Y  N  N   7.483   0.955  -4.408  -1.452   0.739  -0.352  C28   JL5  21  
JL5  C25  C18  C   0  1  Y  N  N   8.040   1.711  -2.206  -1.740  -0.923  -2.067  C25   JL5  22  
JL5  O30  O1   O   0  1  N  N  N   8.598   1.606  -1.008  -2.484  -1.910  -2.637  O30   JL5  23  
JL5  C27  C19  C   0  1  Y  N  N   7.330   2.862  -2.452  -0.514  -0.577  -2.614  C27   JL5  24  
JL5  CL   CL1  CL  0  0  N  N  N   7.285   4.027  -1.180   0.069  -1.403  -4.025  CL31  JL5  25  
JL5  C24  C20  C   0  1  Y  N  N   6.705   3.082  -3.682   0.245   0.424  -2.039  C24   JL5  26  
JL5  C29  C21  C   0  1  N  N  N   5.947   4.376  -3.930   1.577   0.797  -2.636  C29   JL5  27  
JL5  C23  C22  C   0  1  Y  N  N   6.790   2.100  -4.669  -0.219   1.085  -0.902  C23   JL5  28  
JL5  C22  C23  C   0  1  N  N  N   8.454   4.510  -7.972  -1.634   4.371  -1.314  C22   JL5  29  
JL5  S5   S1   S   0  1  Y  N  N   5.840   3.153  -8.371   1.655   4.426   0.238  S5    JL5  30  
JL5  O11  O2   O   0  1  N  N  N   4.524   0.209  -4.642   1.173  -0.443   1.201  O11   JL5  31  
JL5  O16  O3   O   0  1  N  N  N   4.997  -2.267  -5.428  -0.559  -0.997   3.070  O16   JL5  32  
JL5  O15  O4   O   0  1  N  N  N   3.167  -3.124  -4.787   0.514  -2.687   4.005  O15   JL5  33  
JL5  C17  C24  C   0  1  Y  N  N   3.387   0.349  -1.916   2.618  -2.744   0.144  C17   JL5  34  
JL5  C18  C25  C   0  1  Y  N  N   4.274   1.319  -1.517   2.423  -2.138  -1.083  C18   JL5  35  
JL5  C21  C26  C   0  1  Y  N  N   3.796   2.432  -0.851   3.467  -2.051  -1.985  C21   JL5  36  
JL5  C19  C27  C   0  1  Y  N  N   2.445   2.621  -0.621   4.707  -2.569  -1.659  C19   JL5  37  
JL5  C20  C28  C   0  1  Y  N  N   1.535   1.661  -1.038   4.902  -3.174  -0.431  C20   JL5  38  
JL5  C33  C29  C   0  1  Y  N  N   2.024   0.523  -1.667   3.859  -3.257   0.472  C33   JL5  39  
JL5  H1   H1   H   0  1  N  N  N   2.141   0.062  -8.338   3.937   1.868   3.720  H1    JL5  40  
JL5  H2   H2   H   0  1  N  N  N   2.622  -0.580  -4.292   2.432  -1.463   2.483  H2    JL5  41  
JL5  H3   H3   H   0  1  N  N  N   3.395  -1.793  -2.228   1.612  -3.721   1.752  H3    JL5  42  
JL5  H4   H4   H   0  1  N  N  N   4.993  -1.002  -2.445   0.537  -2.917   0.585  H4    JL5  43  
JL5  H5   H5   H   0  1  N  N  N   8.671   3.479  -6.092   0.227   4.755  -2.330  H5    JL5  44  
JL5  H6   H6   H   0  1  N  N  N   7.597   4.918  -6.037  -0.416   3.113  -2.570  H6    JL5  45  
JL5  H7   H7   H   0  1  N  N  N  10.580  -0.023  -4.187  -4.482   0.911  -1.397  H7    JL5  46  
JL5  H8   H8   H   0  1  N  N  N   9.377  -1.015  -5.080  -3.967   1.321   0.257  H8    JL5  47  
JL5  H9   H9   H   0  1  N  N  N  11.154  -2.547  -4.581  -6.407   0.946   0.184  H9    JL5  48  
JL5  H10  H10  H   0  1  N  N  N  11.357  -1.906  -2.915  -6.147  -0.678  -0.500  H10   JL5  49  
JL5  H12  H12  H   0  1  N  N  N   9.628  -5.165  -2.635  -7.345  -1.578   1.462  H12   JL5  50  
JL5  H13  H13  H   0  1  N  N  N  10.767  -4.774  -3.968  -6.721  -1.223   3.090  H13   JL5  51  
JL5  H14  H14  H   0  1  N  N  N  11.167  -4.309  -2.280  -7.507   0.060   2.139  H14   JL5  52  
JL5  H15  H15  H   0  1  N  N  N   8.649  -3.493  -1.419  -4.538  -1.979   2.523  H15   JL5  53  
JL5  H16  H16  H   0  1  N  N  N   9.995  -2.310  -1.307  -5.054  -2.388   0.869  H16   JL5  54  
JL5  H17  H17  H   0  1  N  N  N   7.928  -1.078  -1.210  -2.873  -0.390   1.625  H17   JL5  55  
JL5  H18  H18  H   0  1  N  N  N   7.284  -1.940  -2.648  -2.613  -2.013   0.942  H18   JL5  56  
JL5  H19  H19  H   0  1  N  N  N   7.528   0.188  -5.167  -1.814   1.250   0.528  H19   JL5  57  
JL5  H20  H20  H   0  1  N  N  N   8.403   2.383  -0.498  -3.097  -1.597  -3.316  H20   JL5  58  
JL5  H21  H21  H   0  1  N  N  N   4.897   4.250  -3.628   1.436   1.588  -3.373  H21   JL5  59  
JL5  H22  H22  H   0  1  N  N  N   6.403   5.186  -3.342   2.243   1.149  -1.847  H22   JL5  60  
JL5  H23  H23  H   0  1  N  N  N   5.993   4.629  -5.000   2.016  -0.076  -3.119  H23   JL5  61  
JL5  H24  H24  H   0  1  N  N  N   9.328   5.156  -7.804  -2.246   4.731  -2.142  H24   JL5  62  
JL5  H25  H25  H   0  1  N  N  N   8.754   3.635  -8.568  -2.134   3.531  -0.831  H25   JL5  63  
JL5  H26  H26  H   0  1  N  N  N   7.680   5.074  -8.513  -1.492   5.174  -0.591  H26   JL5  64  
JL5  H27  H27  H   0  1  N  N  N   3.510  -3.841  -5.307  -0.192  -2.743   4.663  H27   JL5  65  
JL5  H28  H28  H   0  1  N  N  N   5.329   1.214  -1.721   1.454  -1.734  -1.338  H28   JL5  66  
JL5  H29  H29  H   0  1  N  N  N   4.497   3.175  -0.500   3.314  -1.579  -2.944  H29   JL5  67  
JL5  H30  H30  H   0  1  N  N  N   2.100   3.513  -0.119   5.523  -2.501  -2.363  H30   JL5  68  
JL5  H31  H31  H   0  1  N  N  N   0.475   1.795  -0.878   5.870  -3.578  -0.176  H31   JL5  69  
JL5  H32  H32  H   0  1  N  N  N   1.332  -0.248  -1.972   4.012  -3.726   1.433  H32   JL5  70  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
JL5  N3   C2   DOUB  Y  N   1  
JL5  N3   C9   SING  Y  N   2  
JL5  S5   C9   SING  Y  N   3  
JL5  S5   C6   SING  Y  N   4  
JL5  C22  C10  SING  N  N   5  
JL5  C2   N1   SING  Y  N   6  
JL5  C9   C8   DOUB  Y  N   7  
JL5  C6   C10  SING  N  N   8  
JL5  C6   C7   DOUB  Y  N   9  
JL5  N1   C4   DOUB  Y  N  10  
JL5  C8   C7   SING  Y  N  11  
JL5  C8   C4   SING  Y  N  12  
JL5  C7   C23  SING  N  N  13  
JL5  C4   O11  SING  N  N  14  
JL5  O16  C14  DOUB  N  N  15  
JL5  C14  O15  SING  N  N  16  
JL5  C14  C12  SING  N  N  17  
JL5  C23  C28  DOUB  Y  N  18  
JL5  C23  C24  SING  Y  N  19  
JL5  O11  C12  SING  N  N  20  
JL5  C28  C26  SING  Y  N  21  
JL5  C12  C13  SING  N  N  22  
JL5  C34  C35  SING  N  N  23  
JL5  C34  N32  SING  N  N  24  
JL5  C29  C24  SING  N  N  25  
JL5  C35  N36  SING  N  N  26  
JL5  C24  C27  DOUB  Y  N  27  
JL5  N36  C39  SING  N  N  28  
JL5  N36  C37  SING  N  N  29  
JL5  C26  N32  SING  N  N  30  
JL5  C26  C25  DOUB  Y  N  31  
JL5  N32  C38  SING  N  N  32  
JL5  C13  C17  SING  N  N  33  
JL5  C27  C25  SING  Y  N  34  
JL5  C27  CL   SING  N  N  35  
JL5  C25  O30  SING  N  N  36  
JL5  C38  C37  SING  N  N  37  
JL5  C17  C33  DOUB  Y  N  38  
JL5  C17  C18  SING  Y  N  39  
JL5  C33  C20  SING  Y  N  40  
JL5  C18  C21  DOUB  Y  N  41  
JL5  C20  C19  DOUB  Y  N  42  
JL5  C21  C19  SING  Y  N  43  
JL5  C2   H1   SING  N  N  44  
JL5  C12  H2   SING  N  N  45  
JL5  C13  H3   SING  N  N  46  
JL5  C13  H4   SING  N  N  47  
JL5  C10  H5   SING  N  N  48  
JL5  C10  H6   SING  N  N  49  
JL5  C34  H7   SING  N  N  50  
JL5  C34  H8   SING  N  N  51  
JL5  C35  H9   SING  N  N  52  
JL5  C35  H10  SING  N  N  53  
JL5  C39  H12  SING  N  N  54  
JL5  C39  H13  SING  N  N  55  
JL5  C39  H14  SING  N  N  56  
JL5  C37  H15  SING  N  N  57  
JL5  C37  H16  SING  N  N  58  
JL5  C38  H17  SING  N  N  59  
JL5  C38  H18  SING  N  N  60  
JL5  C28  H19  SING  N  N  61  
JL5  O30  H20  SING  N  N  62  
JL5  C29  H21  SING  N  N  63  
JL5  C29  H22  SING  N  N  64  
JL5  C29  H23  SING  N  N  65  
JL5  C22  H24  SING  N  N  66  
JL5  C22  H25  SING  N  N  67  
JL5  C22  H26  SING  N  N  68  
JL5  O15  H27  SING  N  N  69  
JL5  C18  H28  SING  N  N  70  
JL5  C21  H29  SING  N  N  71  
JL5  C19  H30  SING  N  N  72  
JL5  C20  H31  SING  N  N  73  
JL5  C33  H32  SING  N  N  74  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
JL5  InChI             InChI                 1.03   "InChI=1S/C29H31ClN4O4S/c1-4-22-23(19-15-20(26(35)25(30)17(19)2)34-12-10-33(3)11-13-34)24-27(31-16-32-28(24)39-22)38-21(29(36)37)14-18-8-6-5-7-9-18/h5-9,15-16,21,35H,4,10-14H2,1-3H3,(H,36,37)/t21-/m1/s1"  
JL5  InChIKey          InChI                 1.03   OZKTZQZOQQOTJP-OAQYLSRUSA-N  
JL5  SMILES_CANONICAL  CACTVS                3.385  "CCc1sc2ncnc(O[C@H](Cc3ccccc3)C(O)=O)c2c1c4cc(N5CCN(C)CC5)c(O)c(Cl)c4C"  
JL5  SMILES            CACTVS                3.385  "CCc1sc2ncnc(O[CH](Cc3ccccc3)C(O)=O)c2c1c4cc(N5CCN(C)CC5)c(O)c(Cl)c4C"  
JL5  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.7  "CCc1c(c2c(ncnc2s1)O[C@H](Cc3ccccc3)C(=O)O)c4cc(c(c(c4C)Cl)O)N5CCN(CC5)C"  
JL5  SMILES            "OpenEye OEToolkits"  2.0.7  "CCc1c(c2c(ncnc2s1)OC(Cc3ccccc3)C(=O)O)c4cc(c(c(c4C)Cl)O)N5CCN(CC5)C"  
#
_pdbx_chem_comp_identifier.comp_id          JL5
_pdbx_chem_comp_identifier.type             "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program          "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version  2.0.7
_pdbx_chem_comp_identifier.identifier       "(2~{R})-2-[5-[3-chloranyl-2-methyl-5-(4-methylpiperazin-1-yl)-4-oxidanyl-phenyl]-6-ethyl-thieno[2,3-d]pyrimidin-4-yl]oxy-3-phenyl-propanoic acid"
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
JL5  "Create component"  2019-03-09  RCSB  
JL5  "Initial release"   2019-08-07  RCSB  
##
