data_JK5
# 
_chem_comp.id                                    JK5 
_chem_comp.name                                  "6-{[(3R,4R)-4-(2-{[2-(3-chloro-5-fluorophenyl)-2,2-difluoroethyl]amino}ethoxy)pyrrolidin-3-yl]methyl}-4-methylpyridin-2-amine" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C21 H26 Cl F3 N4 O" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2011-07-25 
_chem_comp.pdbx_modified_date                    2011-09-23 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        442.906 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     JK5 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        3SVP 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
JK5 N01    N01    N  0 1 Y N N 5.108  5.606  26.779 -5.797 0.572  -1.038 N01    JK5 1  
JK5 C02    C02    C  0 1 Y N N 4.735  6.823  27.269 -6.837 1.391  -1.026 C02    JK5 2  
JK5 N02    N02    N  0 1 N N N 5.658  7.837  27.350 -7.929 1.129  -1.845 N02    JK5 3  
JK5 C03    C03    C  0 1 Y N N 3.384  6.993  27.688 -6.846 2.512  -0.202 C03    JK5 4  
JK5 C04    C04    C  0 1 Y N N 2.462  5.934  27.588 -5.752 2.760  0.607  C04    JK5 5  
JK5 C05    C05    C  0 1 Y N N 2.876  4.704  27.081 -4.682 1.876  0.566  C05    JK5 6  
JK5 C06    C06    C  0 1 Y N N 4.227  4.560  26.687 -4.740 0.783  -0.276 C06    JK5 7  
JK5 C07    C07    C  0 1 N N N 1.011  6.113  28.024 -5.722 3.964  1.514  C07    JK5 8  
JK5 C08    C08    C  0 1 N N N 4.720  3.240  26.131 -3.582 -0.180 -0.326 C08    JK5 9  
JK5 O09    O09    O  0 1 N N N 6.184  1.163  25.458 -1.732 -1.947 -0.584 O09    JK5 10 
JK5 "N1'"  "N1'"  N  0 1 N N N 6.797  1.316  28.478 -4.105 -3.096 1.826  "N1'"  JK5 11 
JK5 C10    C10    C  0 1 N N N 7.153  0.183  25.087 -0.825 -2.759 -1.333 C10    JK5 12 
JK5 C11    C11    C  0 1 N N N 7.967  0.792  23.964 0.425  -1.946 -1.674 C11    JK5 13 
JK5 N12    N12    N  0 1 N N N 9.012  1.647  24.504 1.140  -1.604 -0.437 N12    JK5 14 
JK5 C13    C13    C  0 1 N N N 10.397 1.194  24.586 2.348  -0.821 -0.727 C13    JK5 15 
JK5 C14    C14    C  0 1 N N N 10.769 0.108  23.580 3.064  -0.486 0.583  C14    JK5 16 
JK5 F15    F15    F  0 1 N N N 10.083 0.206  22.440 2.211  0.260  1.403  F15    JK5 17 
JK5 F16    F16    F  0 1 N N N 10.456 -1.106 24.021 3.421  -1.670 1.237  F16    JK5 18 
JK5 "C2'"  "C2'"  C  0 1 N N N 6.247  0.185  27.744 -2.782 -3.276 1.174  "C2'"  JK5 19 
JK5 C21    C21    C  0 1 Y N N 12.256 0.257  23.292 4.304  0.318  0.286  C21    JK5 20 
JK5 C22    C22    C  0 1 Y N N 13.232 -0.465 23.978 4.238  1.697  0.238  C22    JK5 21 
JK5 C23    C23    C  0 1 Y N N 14.578 -0.307 23.673 5.377  2.436  -0.036 C23    JK5 22 
JK5 F23    F23    F  0 1 N N N 15.510 -0.999 24.303 5.313  3.784  -0.083 F23    JK5 23 
JK5 C24    C24    C  0 1 Y N N 14.988 0.547  22.702 6.582  1.791  -0.259 C24    JK5 24 
JK5 C25    C25    C  0 1 Y N N 14.027 1.256  22.039 6.646  0.410  -0.210 C25    JK5 25 
JK5 CL25   CL25   CL 0 0 N N N 14.563 2.349  20.781 8.156  -0.399 -0.489 CL25   JK5 26 
JK5 C26    C26    C  0 1 Y N N 12.679 1.145  22.302 5.508  -0.326 0.069  C26    JK5 27 
JK5 "C3'"  "C3'"  C  0 1 N N R 5.412  0.854  26.639 -2.940 -2.616 -0.213 "C3'"  JK5 28 
JK5 "C4'"  "C4'"  C  0 1 N N R 4.982  2.198  27.229 -4.086 -1.597 -0.044 "C4'"  JK5 29 
JK5 "C5'"  "C5'"  C  0 1 N N N 6.135  2.582  28.162 -4.524 -1.727 1.430  "C5'"  JK5 30 
JK5 HN02   HN02   H  0 0 N N N 6.541  7.512  27.011 -7.928 0.349  -2.421 HN02   JK5 31 
JK5 HN0A   HN0A   H  0 0 N N N 5.352  8.611  26.795 -8.693 1.727  -1.840 HN0A   JK5 32 
JK5 H03    H03    H  0 1 N N N 3.064  7.944  28.087 -7.695 3.180  -0.195 H03    JK5 33 
JK5 H05    H05    H  0 1 N N N 2.183  3.881  26.991 -3.813 2.041  1.185  H05    JK5 34 
JK5 H07    H07    H  0 1 N N N 0.412  6.465  27.171 -6.145 3.699  2.483  H07    JK5 35 
JK5 H07A   H07A   H  0 0 N N N 0.613  5.150  28.378 -4.692 4.294  1.645  H07A   JK5 36 
JK5 H07B   H07B   H  0 0 N N N 0.961  6.852  28.837 -6.308 4.768  1.070  H07B   JK5 37 
JK5 H08    H08    H  0 1 N N N 3.954  2.842  25.449 -3.124 -0.146 -1.314 H08    JK5 38 
JK5 H08A   H08A   H  0 0 N N N 5.661  3.420  25.590 -2.845 0.100  0.426  H08A   JK5 39 
JK5 "HN1'" "HN1'" H  0 0 N N N 6.686  1.139  29.456 -4.766 -3.786 1.499  "HN1'" JK5 40 
JK5 H10    H10    H  0 1 N N N 7.799  -0.063 25.942 -0.542 -3.629 -0.740 H10    JK5 41 
JK5 H10A   H10A   H  0 0 N N N 6.659  -0.739 24.749 -1.307 -3.088 -2.254 H10A   JK5 42 
JK5 H11    H11    H  0 1 N N N 8.428  -0.014 23.374 1.077  -2.535 -2.320 H11    JK5 43 
JK5 H11A   H11A   H  0 0 N N N 7.305  1.392  23.322 0.133  -1.031 -2.190 H11A   JK5 44 
JK5 HN12   HN12   H  0 0 N N N 9.027  2.458  23.919 0.536  -1.114 0.205  HN12   JK5 45 
JK5 H13    H13    H  0 1 N N N 11.047 2.062  24.400 3.013  -1.403 -1.365 H13    JK5 46 
JK5 H13A   H13A   H  0 0 N N N 10.559 0.788  25.595 2.070  0.101  -1.236 H13A   JK5 47 
JK5 "H2'"  "H2'"  H  0 1 N N N 7.041  -0.449 27.323 -2.004 -2.773 1.748  "H2'"  JK5 48 
JK5 "H2'A" "H2'A" H  0 0 N N N 5.626  -0.454 28.390 -2.552 -4.336 1.066  "H2'A" JK5 49 
JK5 H22    H22    H  0 1 N N N 12.938 -1.155 24.755 3.298  2.199  0.412  H22    JK5 50 
JK5 H24    H24    H  0 1 N N N 16.035 0.662  22.462 7.471  2.366  -0.473 H24    JK5 51 
JK5 H26    H26    H  0 1 N N N 11.962 1.735  21.751 5.560  -1.403 0.111  H26    JK5 52 
JK5 "H3'"  "H3'"  H  0 1 N N N 4.595  0.179  26.345 -3.203 -3.364 -0.961 "H3'"  JK5 53 
JK5 "H4'"  "H4'"  H  0 1 N N N 4.027  2.142  27.773 -4.912 -1.844 -0.710 "H4'"  JK5 54 
JK5 "H5'"  "H5'"  H  0 1 N N N 5.760  3.070  29.074 -5.606 -1.621 1.516  "H5'"  JK5 55 
JK5 "H5'A" "H5'A" H  0 0 N N N 6.829  3.278  27.668 -4.018 -0.982 2.045  "H5'A" JK5 56 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
JK5 N01   C02    DOUB Y N 1  
JK5 N01   C06    SING Y N 2  
JK5 C02   N02    SING N N 3  
JK5 C02   C03    SING Y N 4  
JK5 C03   C04    DOUB Y N 5  
JK5 C04   C05    SING Y N 6  
JK5 C04   C07    SING N N 7  
JK5 C05   C06    DOUB Y N 8  
JK5 C06   C08    SING N N 9  
JK5 C08   "C4'"  SING N N 10 
JK5 O09   C10    SING N N 11 
JK5 O09   "C3'"  SING N N 12 
JK5 "N1'" "C2'"  SING N N 13 
JK5 "N1'" "C5'"  SING N N 14 
JK5 C10   C11    SING N N 15 
JK5 C11   N12    SING N N 16 
JK5 N12   C13    SING N N 17 
JK5 C13   C14    SING N N 18 
JK5 C14   F15    SING N N 19 
JK5 C14   F16    SING N N 20 
JK5 C14   C21    SING N N 21 
JK5 "C2'" "C3'"  SING N N 22 
JK5 C21   C22    DOUB Y N 23 
JK5 C21   C26    SING Y N 24 
JK5 C22   C23    SING Y N 25 
JK5 C23   F23    SING N N 26 
JK5 C23   C24    DOUB Y N 27 
JK5 C24   C25    SING Y N 28 
JK5 C25   CL25   SING N N 29 
JK5 C25   C26    DOUB Y N 30 
JK5 "C3'" "C4'"  SING N N 31 
JK5 "C4'" "C5'"  SING N N 32 
JK5 N02   HN02   SING N N 33 
JK5 N02   HN0A   SING N N 34 
JK5 C03   H03    SING N N 35 
JK5 C05   H05    SING N N 36 
JK5 C07   H07    SING N N 37 
JK5 C07   H07A   SING N N 38 
JK5 C07   H07B   SING N N 39 
JK5 C08   H08    SING N N 40 
JK5 C08   H08A   SING N N 41 
JK5 "N1'" "HN1'" SING N N 42 
JK5 C10   H10    SING N N 43 
JK5 C10   H10A   SING N N 44 
JK5 C11   H11    SING N N 45 
JK5 C11   H11A   SING N N 46 
JK5 N12   HN12   SING N N 47 
JK5 C13   H13    SING N N 48 
JK5 C13   H13A   SING N N 49 
JK5 "C2'" "H2'"  SING N N 50 
JK5 "C2'" "H2'A" SING N N 51 
JK5 C22   H22    SING N N 52 
JK5 C24   H24    SING N N 53 
JK5 C26   H26    SING N N 54 
JK5 "C3'" "H3'"  SING N N 55 
JK5 "C4'" "H4'"  SING N N 56 
JK5 "C5'" "H5'"  SING N N 57 
JK5 "C5'" "H5'A" SING N N 58 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
JK5 SMILES           ACDLabs              12.01 "Fc1cc(cc(Cl)c1)C(F)(F)CNCCOC2C(CNC2)Cc3nc(N)cc(c3)C"                                                                                                                                 
JK5 InChI            InChI                1.03  "InChI=1S/C21H26ClF3N4O/c1-13-4-18(29-20(26)5-13)6-14-10-28-11-19(14)30-3-2-27-12-21(24,25)15-7-16(22)9-17(23)8-15/h4-5,7-9,14,19,27-28H,2-3,6,10-12H2,1H3,(H2,26,29)/t14-,19+/m1/s1" 
JK5 InChIKey         InChI                1.03  WCMZHGFWPJYQKM-KUHUBIRLSA-N                                                                                                                                                           
JK5 SMILES_CANONICAL CACTVS               3.370 "Cc1cc(N)nc(C[C@@H]2CNC[C@@H]2OCCNCC(F)(F)c3cc(F)cc(Cl)c3)c1"                                                                                                                         
JK5 SMILES           CACTVS               3.370 "Cc1cc(N)nc(C[CH]2CNC[CH]2OCCNCC(F)(F)c3cc(F)cc(Cl)c3)c1"                                                                                                                             
JK5 SMILES_CANONICAL "OpenEye OEToolkits" 1.7.2 "Cc1cc(nc(c1)N)C[C@@H]2CNC[C@@H]2OCCNCC(c3cc(cc(c3)Cl)F)(F)F"                                                                                                                         
JK5 SMILES           "OpenEye OEToolkits" 1.7.2 "Cc1cc(nc(c1)N)CC2CNCC2OCCNCC(c3cc(cc(c3)Cl)F)(F)F"                                                                                                                                   
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
JK5 "SYSTEMATIC NAME" ACDLabs              12.01 "6-{[(3R,4R)-4-(2-{[2-(3-chloro-5-fluorophenyl)-2,2-difluoroethyl]amino}ethoxy)pyrrolidin-3-yl]methyl}-4-methylpyridin-2-amine"               
JK5 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.2 "6-[[(3R,4R)-4-[2-[[2-(3-chloranyl-5-fluoranyl-phenyl)-2,2-bis(fluoranyl)ethyl]amino]ethoxy]pyrrolidin-3-yl]methyl]-4-methyl-pyridin-2-amine" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
JK5 "Create component" 2011-07-25 RCSB 
# 
