data_IK5
# 
_chem_comp.id                                    IK5 
_chem_comp.name                                  "(3~{R},5~{R})-5-[3-[2-azanyl-4-(trifluoromethyl)phenyl]-1,2,4-oxadiazol-5-yl]-3-[2-[[methyl(prop-2-ynyl)amino]methyl]-1,3-thiazol-4-yl]pyrrolidin-3-ol" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C21 H21 F3 N6 O2 S" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2023-08-01 
_chem_comp.pdbx_modified_date                    2024-08-02 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        478.491 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     IK5 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        8Q13 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBE 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
IK5 C13  C1  C 0 1 N N N N N N 0.114  5.496  9.066  -1.682 -0.817 0.011  C13  IK5 1  
IK5 C12  C2  C 0 1 N N R N N N 1.113  6.079  10.098 -2.686 -1.992 0.048  C12  IK5 2  
IK5 C01  C3  C 0 1 N N N N N N 0.359  11.357 11.012 -5.168 2.530  0.407  C01  IK5 3  
IK5 C03  C4  C 0 1 N N N N N N -0.040 13.094 9.454  -7.529 3.041  0.572  C03  IK5 4  
IK5 C04  C5  C 0 1 N N N N N N -1.545 12.830 9.463  -7.402 4.281  -0.211 C04  IK5 5  
IK5 C05  C6  C 0 1 N N N N N N -2.715 12.627 9.475  -7.302 5.270  -0.836 C05  IK5 6  
IK5 C06  C7  C 0 1 N N N N N N 0.396  10.885 8.682  -6.776 0.743  0.699  C06  IK5 7  
IK5 C07  C8  C 0 1 Y N N N N N 1.215  9.625  8.940  -5.896 -0.277 0.024  C07  IK5 8  
IK5 C09  C9  C 0 1 Y N N N N N 1.616  7.490  9.559  -4.075 -1.517 -0.293 C09  IK5 9  
IK5 C10  C10 C 0 1 Y N N N N N 2.940  7.764  9.246  -4.766 -1.990 -1.335 C10  IK5 10 
IK5 C14  C11 C 0 1 N N R N N N 0.682  4.069  8.682  -0.742 -1.054 1.207  C14  IK5 11 
IK5 C16  C12 C 0 1 N N N N N N 2.136  5.182  10.228 -2.615 -2.463 1.522  C16  IK5 12 
IK5 C17  C13 C 0 1 Y N N N N N 0.001  2.853  9.311  0.680  -1.187 0.725  C17  IK5 13 
IK5 C19  C14 C 0 1 Y N N N N N -1.529 1.487  9.989  2.721  -0.841 0.266  C19  IK5 14 
IK5 C22  C15 C 0 1 Y N N N N N -2.774 0.934  10.256 4.059  -0.216 0.141  C22  IK5 15 
IK5 C23  C16 C 0 1 Y N N N N N -2.973 -0.424 10.063 4.283  1.064  0.642  C23  IK5 16 
IK5 C24  C17 C 0 1 Y N N N N N -4.210 -0.992 10.323 5.530  1.642  0.523  C24  IK5 17 
IK5 C25  C18 C 0 1 Y N N N N N -5.252 -0.194 10.768 6.562  0.956  -0.093 C25  IK5 18 
IK5 C26  C19 C 0 1 Y N N N N N -5.054 1.161  10.962 6.353  -0.314 -0.595 C26  IK5 19 
IK5 C27  C20 C 0 1 Y N N N N N -3.819 1.728  10.706 5.106  -0.911 -0.477 C27  IK5 20 
IK5 C29  C21 C 0 1 N N N N N N -6.625 -0.791 11.061 7.920  1.597  -0.218 C29  IK5 21 
IK5 F30  F1  F 0 1 N N N N N N -7.475 -0.498 10.034 7.889  2.872  0.357  F30  IK5 22 
IK5 F31  F2  F 0 1 N N N N N N -6.529 -2.142 11.220 8.870  0.811  0.442  F31  IK5 23 
IK5 F32  F3  F 0 1 N N N N N N -7.109 -0.235 12.206 8.263  1.704  -1.570 F32  IK5 24 
IK5 N02  N1  N 0 1 N N N N N N 0.707  11.874 9.701  -6.530 2.067  0.111  N02  IK5 25 
IK5 N08  N2  N 0 1 Y N N N N N 0.755  8.475  9.388  -4.710 -0.603 0.414  N08  IK5 26 
IK5 N15  N3  N 0 1 N N N N N N 1.968  4.056  9.053  -1.176 -2.309 1.859  N15  IK5 27 
IK5 N18  N4  N 0 1 Y N N N N N -1.301 2.647  9.396  1.626  -0.288 0.836  N18  IK5 28 
IK5 N20  N5  N 0 1 Y N N N N N -0.368 0.927  10.271 2.379  -2.034 -0.150 N20  IK5 29 
IK5 N28  N6  N 0 1 N N N N N N -3.639 3.151  10.915 4.894  -2.194 -0.977 N28  IK5 30 
IK5 O21  O1  O 0 1 Y N N N N N 0.606  1.781  9.845  1.212  -2.246 0.107  O21  IK5 31 
IK5 O33  O2  O 0 1 N N N N N N 0.452  6.260  11.319 -2.278 -3.034 -0.840 O33  IK5 32 
IK5 S11  S1  S 0 1 Y N N N N N 2.912  9.413  8.724  -6.328 -1.176 -1.364 S11  IK5 33 
IK5 H132 H1  H 0 0 N N N N N N 0.062  6.140  8.176  -1.119 -0.830 -0.922 H132 IK5 34 
IK5 H131 H2  H 0 0 N N N N N N -0.888 5.403  9.511  -2.206 0.132  0.123  H131 IK5 35 
IK5 H013 H3  H 0 0 N N N N N N 0.923  10.432 11.204 -5.055 2.664  1.483  H013 IK5 36 
IK5 H011 H4  H 0 0 N N N N N N 0.609  12.105 11.779 -4.449 1.790  0.055  H011 IK5 37 
IK5 H012 H5  H 0 0 N N N N N N -0.719 11.143 11.047 -4.989 3.479  -0.098 H012 IK5 38 
IK5 H032 H6  H 0 0 N N N N N N 0.248  13.499 8.472  -7.363 3.260  1.627  H032 IK5 39 
IK5 H031 H7  H 0 0 N N N N N N 0.201  13.827 10.238 -8.528 2.628  0.439  H031 IK5 40 
IK5 H051 H8  H 0 0 N N N N N N -3.759 12.446 9.486  -7.212 6.154  -1.395 H051 IK5 41 
IK5 H061 H9  H 0 0 N N N N N N -0.676 10.641 8.721  -7.822 0.472  0.558  H061 IK5 42 
IK5 H062 H10 H 0 0 N N N N N N 0.645  11.289 7.689  -6.548 0.771  1.765  H062 IK5 43 
IK5 H101 H11 H 0 0 N N N N N N 3.790  7.102  9.313  -4.427 -2.740 -2.033 H101 IK5 44 
IK5 H141 H12 H 0 0 N N N N N N 0.598  3.971  7.590  -0.819 -0.225 1.911  H141 IK5 45 
IK5 H161 H13 H 0 0 N N N N N N 2.088  4.701  11.216 -3.229 -1.827 2.160  H161 IK5 46 
IK5 H162 H14 H 0 0 N N N N N N 3.102  5.697  10.117 -2.920 -3.506 1.608  H162 IK5 47 
IK5 H231 H15 H 0 0 N N N N N N -2.161 -1.042 9.709  3.481  1.604  1.123  H231 IK5 48 
IK5 H241 H16 H 0 0 N N N N N N -4.361 -2.052 10.180 5.702  2.635  0.912  H241 IK5 49 
IK5 H261 H17 H 0 0 N N N N N N -5.867 1.778  11.315 7.162  -0.845 -1.075 H261 IK5 50 
IK5 H2   H19 H 0 1 N N N N N N 2.553  4.282  8.274  -1.041 -2.263 2.858  H2   IK5 51 
IK5 H282 H21 H 0 0 N N N N N N -2.699 3.406  10.688 4.021  -2.608 -0.898 H282 IK5 52 
IK5 H281 H22 H 0 0 N N N N N N -4.272 3.657  10.329 5.621  -2.674 -1.405 H281 IK5 53 
IK5 H331 H23 H 0 0 N N N N N N 0.150  5.420  11.644 -2.875 -3.795 -0.854 H331 IK5 54 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
IK5 N02 C01  SING N N 1  
IK5 C04 C03  SING N N 2  
IK5 C05 C04  TRIP N N 3  
IK5 C03 N02  SING N N 4  
IK5 C06 N02  SING N N 5  
IK5 C07 C06  SING N N 6  
IK5 N08 C07  DOUB Y N 7  
IK5 C09 N08  SING Y N 8  
IK5 S11 C10  SING Y N 9  
IK5 C10 C09  DOUB Y N 10 
IK5 C12 C09  SING N N 11 
IK5 C14 C13  SING N N 12 
IK5 C16 N15  SING N N 13 
IK5 N15 C14  SING N N 14 
IK5 C17 C14  SING N N 15 
IK5 N18 C17  DOUB Y N 16 
IK5 C19 N18  SING Y N 17 
IK5 O21 N20  SING Y N 18 
IK5 N20 C19  DOUB Y N 19 
IK5 C22 C19  SING N N 20 
IK5 C23 C22  DOUB Y N 21 
IK5 C24 C23  SING Y N 22 
IK5 C25 C24  DOUB Y N 23 
IK5 C27 C26  DOUB Y N 24 
IK5 N28 C27  SING N N 25 
IK5 C26 C25  SING Y N 26 
IK5 C29 C25  SING N N 27 
IK5 F30 C29  SING N N 28 
IK5 F31 C29  SING N N 29 
IK5 F32 C29  SING N N 30 
IK5 C13 C12  SING N N 31 
IK5 O33 C12  SING N N 32 
IK5 C07 S11  SING Y N 33 
IK5 C12 C16  SING N N 34 
IK5 C17 O21  SING Y N 35 
IK5 C22 C27  SING Y N 36 
IK5 C13 H132 SING N N 37 
IK5 C13 H131 SING N N 38 
IK5 C01 H013 SING N N 39 
IK5 C01 H011 SING N N 40 
IK5 C01 H012 SING N N 41 
IK5 C03 H032 SING N N 42 
IK5 C03 H031 SING N N 43 
IK5 C05 H051 SING N N 44 
IK5 C06 H061 SING N N 45 
IK5 C06 H062 SING N N 46 
IK5 C10 H101 SING N N 47 
IK5 C14 H141 SING N N 48 
IK5 C16 H161 SING N N 49 
IK5 C16 H162 SING N N 50 
IK5 C23 H231 SING N N 51 
IK5 C24 H241 SING N N 52 
IK5 C26 H261 SING N N 53 
IK5 N15 H2   SING N N 54 
IK5 N28 H282 SING N N 55 
IK5 N28 H281 SING N N 56 
IK5 O33 H331 SING N N 57 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
IK5 InChI            InChI                1.06  "InChI=1S/C21H21F3N6O2S/c1-3-6-30(2)9-17-27-16(10-33-17)20(31)8-15(26-11-20)19-28-18(29-32-19)13-5-4-12(7-14(13)25)21(22,23)24/h1,4-5,7,10,15,26,31H,6,8-9,11,25H2,2H3/t15-,20-/m1/s1" 
IK5 InChIKey         InChI                1.06  SGWUDBLAHJGXJU-FOIQADDNSA-N                                                                                                                                                            
IK5 SMILES_CANONICAL CACTVS               3.385 "CN(CC#C)Cc1scc(n1)[C@]2(O)CN[C@H](C2)c3onc(n3)c4ccc(cc4N)C(F)(F)F"                                                                                                                    
IK5 SMILES           CACTVS               3.385 "CN(CC#C)Cc1scc(n1)[C]2(O)CN[CH](C2)c3onc(n3)c4ccc(cc4N)C(F)(F)F"                                                                                                                      
IK5 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CN(CC#C)Cc1nc(cs1)[C@]2(C[C@@H](NC2)c3nc(no3)c4ccc(cc4N)C(F)(F)F)O"                                                                                                                   
IK5 SMILES           "OpenEye OEToolkits" 2.0.7 "CN(CC#C)Cc1nc(cs1)C2(CC(NC2)c3nc(no3)c4ccc(cc4N)C(F)(F)F)O"                                                                                                                           
# 
_pdbx_chem_comp_identifier.comp_id           IK5 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   2.0.7 
_pdbx_chem_comp_identifier.identifier        "(3~{R},5~{R})-5-[3-[2-azanyl-4-(trifluoromethyl)phenyl]-1,2,4-oxadiazol-5-yl]-3-[2-[[methyl(prop-2-ynyl)amino]methyl]-1,3-thiazol-4-yl]pyrrolidin-3-ol" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
IK5 "Create component" 2023-08-01 PDBE 
IK5 "Initial release"  2024-08-07 RCSB 
# 
