data_IE5
# 
_chem_comp.id                                    IE5 
_chem_comp.name                                  "Biliverdine IX Alpha" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C33 H34 N4 O6" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         "3-[5-[(3-ethenyl-4-methyl-5-oxidanylidene-pyrrol-2-ylidene)methyl]-2-[(~{Z})-[5-[(~{Z})-(4-ethenyl-3-methyl-5-oxidanylidene-pyrrol-2-ylidene)methyl]-3-(3-hydroxy-3-oxopropyl)-4-methyl-pyrrol-2-ylidene]methyl]-4-methyl-1~{H}-pyrrol-3-yl]propanoic acid" 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2022-06-27 
_chem_comp.pdbx_modified_date                    2023-09-20 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        582.646 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     IE5 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        7Y48 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBJ 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
IE5 N3    N1  N 0 1 N N N 170.706 156.289 184.801 -0.556 1.425  0.108  N3    IE5 1  
IE5 C4    C1  C 0 1 N N N 169.596 155.434 184.758 -1.809 1.144  0.486  C4    IE5 2  
IE5 C5    C2  C 0 1 N N N 168.841 155.250 185.862 -2.342 -0.141 0.676  C5    IE5 3  
IE5 C6    C3  C 0 1 Y N N 169.186 155.860 187.240 -1.519 -1.264 0.550  C6    IE5 4  
IE5 C8    C4  C 0 1 N N N 171.492 159.317 188.745 2.632  -2.133 0.782  C8    IE5 5  
IE5 C10   C5  C 0 1 N N N 172.621 157.126 183.103 0.789  3.418  -0.338 C10   IE5 6  
IE5 C13   C6  C 0 1 N N N 175.056 158.820 185.395 4.032  2.184  -1.237 C13   IE5 7  
IE5 C15   C7  C 0 1 N N N 170.439 155.312 182.546 -1.629 3.363  0.378  C15   IE5 8  
IE5 C17   C8  C 0 1 N N N 169.350 154.813 183.483 -2.507 2.367  0.662  C17   IE5 9  
IE5 C20   C9  C 0 1 N N N 167.342 151.437 183.236 -6.288 2.587  0.275  C20   IE5 10 
IE5 C21   C10 C 0 1 Y N N 168.830 155.340 188.466 -1.950 -2.585 0.392  C21   IE5 11 
IE5 C22   C11 C 0 1 N N N 168.045 154.029 188.686 -3.380 -3.054 0.326  C22   IE5 12 
IE5 C26   C12 C 0 1 N N N 169.157 156.017 190.955 -0.808 -4.879 0.129  C26   IE5 13 
IE5 C28   C13 C 0 1 N N N 174.383 159.777 182.810 3.561  4.695  -0.883 C28   IE5 14 
IE5 "C1'" C14 C 0 1 N N N 173.372 160.861 188.451 4.688  -1.243 1.218  "C1'" IE5 15 
IE5 CAC   C15 C 0 1 N N N 172.725 159.873 189.521 4.083  -2.358 0.666  CAC   IE5 16 
IE5 CAB   C16 C 0 1 N N N 170.662 158.458 189.376 1.641  -2.975 0.367  CAB   IE5 17 
IE5 CAA   C17 C 0 1 Y N N 169.959 157.231 188.762 0.293  -2.554 0.407  CAA   IE5 18 
IE5 N6    N2  N 0 1 Y N N 169.837 156.979 187.488 -0.140 -1.263 0.554  N6    IE5 19 
IE5 C2    C18 C 0 1 N N N 171.338 156.303 183.442 -0.402 2.744  0.030  C2    IE5 20 
IE5 C11   C19 C 0 1 N N N 173.425 157.520 184.105 1.914  2.695  -0.676 C11   IE5 21 
IE5 NAA   N3  N 0 1 N N N 173.564 156.845 185.303 1.973  1.314  -0.819 NAA   IE5 22 
IE5 C12   C20 C 0 1 N N N 174.470 157.553 186.050 3.228  0.958  -1.154 C12   IE5 23 
IE5 OP3   O1  O 0 1 N N N 174.764 157.186 187.138 3.625  -0.176 -1.354 OP3   IE5 24 
IE5 C14   C21 C 0 1 N N N 174.289 158.793 183.977 3.186  3.236  -0.932 C14   IE5 25 
IE5 C16   C22 C 0 1 N N N 170.647 154.946 181.046 -1.906 4.843  0.423  C16   IE5 26 
IE5 C18   C23 C 0 1 N N N 168.204 153.831 183.108 -3.944 2.529  1.083  C18   IE5 27 
IE5 C19   C24 C 0 1 N N N 168.382 152.437 183.764 -4.850 2.425  -0.146 C19   IE5 28 
IE5 "O5'" O2  O 0 1 N N N 166.216 151.369 183.773 -7.266 2.531  -0.642 "O5'" IE5 29 
IE5 OP1   O3  O 0 1 N N N 167.624 150.694 182.267 -6.561 2.767  1.439  OP1   IE5 30 
IE5 "C4'" C25 C 0 1 N N N 166.530 154.236 188.526 -3.854 -3.044 -1.129 "C4'" IE5 31 
IE5 "C3'" C26 C 0 1 N N N 165.904 153.093 187.720 -5.285 -3.513 -1.194 "C3'" IE5 32 
IE5 "O3'" O4  O 0 1 N N N 165.814 153.176 186.464 -5.866 -3.823 -0.181 "O3'" IE5 33 
IE5 O5    O5  O 0 1 N N N 165.489 152.075 188.320 -5.914 -3.585 -2.378 O5    IE5 34 
IE5 C25   C27 C 0 1 Y N N 169.310 156.203 189.438 -0.825 -3.382 0.306  C25   IE5 35 
IE5 N4    N4  N 0 1 N N N 171.347 159.854 187.453 2.467  -0.902 1.400  N4    IE5 36 
IE5 C27   C28 C 0 1 N N N 172.405 160.702 187.299 3.675  -0.372 1.657  C27   IE5 37 
IE5 "O2'" O6  O 0 1 N N N 172.554 161.298 186.284 3.865  0.704  2.197  "O2'" IE5 38 
IE5 C29   C29 C 0 1 N N N 176.055 159.859 185.927 5.463  2.276  -1.574 C29   IE5 39 
IE5 C30   C30 C 0 1 N N N 176.950 159.570 186.866 6.127  1.190  -1.959 C30   IE5 40 
IE5 C31   C31 C 0 1 N N N 173.219 159.554 190.954 4.753  -3.532 0.083  C31   IE5 41 
IE5 C32   C32 C 0 1 N N N 173.499 160.550 191.772 5.724  -3.367 -0.812 C32   IE5 42 
IE5 C33   C33 C 0 1 N N N 174.641 161.722 188.580 6.172  -1.006 1.332  C33   IE5 43 
IE5 H3    H2  H 0 1 N N N 167.950 154.645 185.778 -3.387 -0.262 0.919  H3    IE5 44 
IE5 H4    H5  H 0 1 N N N 172.858 157.375 182.079 0.815  4.497  -0.355 H4    IE5 45 
IE5 H14   H7  H 0 1 N N N 168.382 153.284 187.950 -3.450 -4.066 0.724  H14   IE5 46 
IE5 H13   H8  H 0 1 N N N 168.248 153.659 189.702 -4.008 -2.388 0.917  H13   IE5 47 
IE5 H19   H9  H 0 1 N N N 170.009 155.439 191.342 -0.797 -5.119 -0.934 H19   IE5 48 
IE5 H17   H10 H 0 1 N N N 169.130 157.002 191.444 0.082  -5.291 0.605  H17   IE5 49 
IE5 H18   H11 H 0 1 N N N 168.222 155.477 191.166 -1.698 -5.309 0.589  H18   IE5 50 
IE5 H21   H12 H 0 1 N N N 175.100 160.574 183.058 3.891  4.952  0.123  H21   IE5 51 
IE5 H22   H13 H 0 1 N N N 174.723 159.246 181.909 4.367  4.887  -1.591 H22   IE5 52 
IE5 H23   H14 H 0 1 N N N 173.393 160.220 182.623 2.694  5.302  -1.147 H23   IE5 53 
IE5 H35   H17 H 0 1 N N N 170.471 158.651 190.421 1.888  -3.963 0.007  H35   IE5 54 
IE5 H2    H18 H 0 1 N N N 170.201 157.575 186.772 0.427  -0.482 0.645  H2    IE5 55 
IE5 H5    H19 H 0 1 N N N 173.095 156.004 185.573 1.230  0.703  -0.697 H5    IE5 56 
IE5 H7    H20 H 0 1 N N N 169.863 154.243 180.727 -1.006 5.390  0.143  H7    IE5 57 
IE5 H6    H21 H 0 1 N N N 170.591 155.859 180.435 -2.709 5.083  -0.274 H6    IE5 58 
IE5 H8    H22 H 0 1 N N N 171.634 154.478 180.916 -2.205 5.126  1.433  H8    IE5 59 
IE5 H10   H23 H 0 1 N N N 167.248 154.260 183.443 -4.205 1.745  1.794  H10   IE5 60 
IE5 H9    H24 H 0 1 N N N 168.188 153.708 182.015 -4.078 3.504  1.551  H9    IE5 61 
IE5 H11   H25 H 0 1 N N N 169.390 152.060 183.537 -4.717 1.449  -0.614 H11   IE5 62 
IE5 H12   H26 H 0 1 N N N 168.264 152.535 184.853 -4.589 3.208  -0.857 H12   IE5 63 
IE5 H36   H27 H 0 1 N N N 165.694 150.709 183.332 -8.173 2.641  -0.324 H36   IE5 64 
IE5 H15   H28 H 0 1 N N N 166.350 155.187 188.003 -3.785 -2.031 -1.526 H15   IE5 65 
IE5 H16   H29 H 0 1 N N N 166.064 154.272 189.522 -3.226 -3.710 -1.720 H16   IE5 66 
IE5 H37   H30 H 0 1 N N N 165.135 151.458 187.690 -6.831 -3.891 -2.370 H37   IE5 67 
IE5 H20   H31 H 0 1 N N N 170.624 159.657 186.790 1.616  -0.489 1.612  H20   IE5 68 
IE5 H24   H32 H 0 1 N N N 176.029 160.860 185.523 5.973  3.226  -1.509 H24   IE5 69 
IE5 H26   H33 H 0 1 N N N 177.634 160.330 187.212 5.598  0.261  -2.114 H26   IE5 70 
IE5 H25   H34 H 0 1 N N N 176.993 158.575 187.283 7.194  1.236  -2.115 H25   IE5 71 
IE5 H27   H35 H 0 1 N N N 173.333 158.530 191.279 4.457  -4.527 0.381  H27   IE5 72 
IE5 H53   H36 H 0 1 N N N 173.845 160.345 192.774 6.069  -2.374 -1.058 H53   IE5 73 
IE5 H29   H37 H 0 1 N N N 173.383 161.571 191.439 6.167  -4.227 -1.293 H29   IE5 74 
IE5 H30   H38 H 0 1 N N N 175.085 161.575 189.576 6.514  -0.424 0.477  H30   IE5 75 
IE5 H31   H39 H 0 1 N N N 175.366 161.425 187.808 6.383  -0.459 2.251  H31   IE5 76 
IE5 H32   H40 H 0 1 N N N 174.379 162.782 188.448 6.692  -1.964 1.352  H32   IE5 77 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
IE5 C16   C15   SING N N 1  
IE5 OP1   C20   DOUB N N 2  
IE5 C15   C2    SING N N 3  
IE5 C15   C17   DOUB N N 4  
IE5 C28   C14   SING N N 5  
IE5 C10   C2    SING N N 6  
IE5 C10   C11   DOUB N Z 7  
IE5 C18   C17   SING N N 8  
IE5 C18   C19   SING N N 9  
IE5 C20   C19   SING N N 10 
IE5 C20   "O5'" SING N N 11 
IE5 C2    N3    DOUB N N 12 
IE5 C17   C4    SING N N 13 
IE5 C14   C11   SING N N 14 
IE5 C14   C13   DOUB N N 15 
IE5 C11   NAA   SING N N 16 
IE5 C4    N3    SING N N 17 
IE5 C4    C5    DOUB N Z 18 
IE5 NAA   C12   SING N N 19 
IE5 C13   C29   SING N N 20 
IE5 C13   C12   SING N N 21 
IE5 C5    C6    SING N N 22 
IE5 C29   C30   DOUB N N 23 
IE5 C12   OP3   DOUB N N 24 
IE5 "O2'" C27   DOUB N N 25 
IE5 "O3'" "C3'" DOUB N N 26 
IE5 C6    N6    SING Y N 27 
IE5 C6    C21   DOUB Y N 28 
IE5 C27   N4    SING N N 29 
IE5 C27   "C1'" SING N N 30 
IE5 N4    C8    SING N N 31 
IE5 N6    CAA   SING Y N 32 
IE5 "C3'" O5    SING N N 33 
IE5 "C3'" "C4'" SING N N 34 
IE5 "C1'" C33   SING N N 35 
IE5 "C1'" CAC   DOUB N N 36 
IE5 C21   C22   SING N N 37 
IE5 C21   C25   SING Y N 38 
IE5 "C4'" C22   SING N N 39 
IE5 C8    CAB   DOUB N Z 40 
IE5 C8    CAC   SING N N 41 
IE5 CAA   CAB   SING N N 42 
IE5 CAA   C25   DOUB Y N 43 
IE5 C25   C26   SING N N 44 
IE5 CAC   C31   SING N N 45 
IE5 C31   C32   DOUB N N 46 
IE5 C5    H3    SING N N 47 
IE5 C10   H4    SING N N 48 
IE5 C22   H14   SING N N 49 
IE5 C22   H13   SING N N 50 
IE5 C26   H19   SING N N 51 
IE5 C26   H17   SING N N 52 
IE5 C26   H18   SING N N 53 
IE5 C28   H21   SING N N 54 
IE5 C28   H22   SING N N 55 
IE5 C28   H23   SING N N 56 
IE5 CAB   H35   SING N N 57 
IE5 N6    H2    SING N N 58 
IE5 NAA   H5    SING N N 59 
IE5 C16   H7    SING N N 60 
IE5 C16   H6    SING N N 61 
IE5 C16   H8    SING N N 62 
IE5 C18   H10   SING N N 63 
IE5 C18   H9    SING N N 64 
IE5 C19   H11   SING N N 65 
IE5 C19   H12   SING N N 66 
IE5 "O5'" H36   SING N N 67 
IE5 "C4'" H15   SING N N 68 
IE5 "C4'" H16   SING N N 69 
IE5 O5    H37   SING N N 70 
IE5 N4    H20   SING N N 71 
IE5 C29   H24   SING N N 72 
IE5 C30   H26   SING N N 73 
IE5 C30   H25   SING N N 74 
IE5 C31   H27   SING N N 75 
IE5 C32   H53   SING N N 76 
IE5 C32   H29   SING N N 77 
IE5 C33   H30   SING N N 78 
IE5 C33   H31   SING N N 79 
IE5 C33   H32   SING N N 80 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
IE5 InChI            InChI                1.06  "InChI=1S/C33H34N4O6/c1-7-20-19(6)32(42)37-27(20)14-25-18(5)23(10-12-31(40)41)29(35-25)15-28-22(9-11-30(38)39)17(4)24(34-28)13-26-16(3)21(8-2)33(43)36-26/h7-8,13-15,35H,1-2,9-12H2,3-6H3,(H,36,43)(H,37,42)(H,38,39)(H,40,41)/b26-13-,27-14-,28-15-" 
IE5 InChIKey         InChI                1.06  QBUVFDKTZJNUPP-BBROENKCSA-N                                                                                                                                                                                                                           
IE5 SMILES_CANONICAL CACTVS               3.385 "Cc1c([nH]c(\C=C2/N=C(\C=C3/NC(=O)C(=C3C)C=C)C(=C2CCC(O)=O)C)c1CCC(O)=O)/C=C/4NC(=O)C(=C/4C=C)C"                                                                                                                                                      
IE5 SMILES           CACTVS               3.385 "Cc1c([nH]c(C=C2N=C(C=C3NC(=O)C(=C3C)C=C)C(=C2CCC(O)=O)C)c1CCC(O)=O)C=C4NC(=O)C(=C4C=C)C"                                                                                                                                                             
IE5 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "Cc1c(c([nH]c1C=C2C(=C(C(=O)N2)C)C=C)/C=C\3/C(=C(C(=N3)/C=C\4/C(=C(C(=O)N4)C=C)C)C)CCC(=O)O)CCC(=O)O"                                                                                                                                                 
IE5 SMILES           "OpenEye OEToolkits" 2.0.7 "Cc1c(c([nH]c1C=C2C(=C(C(=O)N2)C)C=C)C=C3C(=C(C(=N3)C=C4C(=C(C(=O)N4)C=C)C)C)CCC(=O)O)CCC(=O)O"                                                                                                                                                       
# 
_pdbx_chem_comp_identifier.comp_id           IE5 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   2.0.7 
_pdbx_chem_comp_identifier.identifier        "3-[5-[(3-ethenyl-4-methyl-5-oxidanylidene-pyrrol-2-ylidene)methyl]-2-[(~{Z})-[5-[(~{Z})-(4-ethenyl-3-methyl-5-oxidanylidene-pyrrol-2-ylidene)methyl]-3-(3-hydroxy-3-oxopropyl)-4-methyl-pyrrol-2-ylidene]methyl]-4-methyl-1~{H}-pyrrol-3-yl]propanoic acid" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
IE5 "Create component"   2022-06-27 PDBJ 
IE5 "Other modification" 2023-05-15 PDBJ 
IE5 "Initial release"    2023-05-24 RCSB 
IE5 "Modify name"        2023-09-20 PDBJ 
# 
_pdbx_chem_comp_synonyms.ordinal      1 
_pdbx_chem_comp_synonyms.comp_id      IE5 
_pdbx_chem_comp_synonyms.name         "3-[5-[(3-ethenyl-4-methyl-5-oxidanylidene-pyrrol-2-ylidene)methyl]-2-[(~{Z})-[5-[(~{Z})-(4-ethenyl-3-methyl-5-oxidanylidene-pyrrol-2-ylidene)methyl]-3-(3-hydroxy-3-oxopropyl)-4-methyl-pyrrol-2-ylidene]methyl]-4-methyl-1~{H}-pyrrol-3-yl]propanoic acid" 
_pdbx_chem_comp_synonyms.provenance   ? 
_pdbx_chem_comp_synonyms.type         ? 
# 
