data_I55
# 
_chem_comp.id                                    I55 
_chem_comp.name                                  "[(2~{R},3~{R},4~{S},5~{R},6~{R})-6-[(~{E})-[(3~{a}~{S},7~{R},7~{a}~{S})-7-oxidanyl-4-oxidanylidene-3,3~{a},5,6,7,7~{a}-hexahydro-1~{H}-imidazo[4,5-c]pyridin-2-ylidene]amino]-5-(2-azanylethanoylamino)-2-(hydroxymethyl)-4-oxidanyl-oxan-3-yl] carbamate" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C15 H25 N7 O8" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2022-06-09 
_chem_comp.pdbx_modified_date                    2023-05-26 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        431.401 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     I55 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        7XXC 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBJ 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
I55 C4  C1  C 0 1 N N R -11.489 -16.439 -7.318  0.809  -0.114 -0.121 C4  I55 1  
I55 C14 C2  C 0 1 N N N -7.252  -15.367 -8.522  5.429  -0.302 0.737  C14 I55 2  
I55 C5  C3  C 0 1 N N N -13.462 -15.600 -6.150  -1.493 -0.151 0.552  C5  I55 3  
I55 C6  C4  C 0 1 N N S -15.562 -15.040 -5.427  -3.768 -0.339 0.678  C6  I55 4  
I55 C11 C5  C 0 1 N N R -9.533  -17.805 -7.063  2.772  -1.389 -0.645 C11 I55 5  
I55 C7  C6  C 0 1 N N N -16.400 -14.629 -4.245  -4.774 -1.271 1.290  C7  I55 6  
I55 C8  C7  C 0 1 N N N -17.708 -16.782 -4.452  -5.597 -1.512 -1.035 C8  I55 7  
I55 C9  C8  C 0 1 N N R -16.783 -17.135 -5.624  -4.240 -1.103 -1.611 C9  I55 8  
I55 C10 C9  C 0 1 N N S -15.389 -16.565 -5.353  -3.198 -1.154 -0.522 C10 I55 9  
I55 C12 C10 C 0 1 N N N -8.600  -18.232 -5.972  3.654  -2.525 -0.125 C12 I55 10 
I55 C13 C11 C 0 1 N N R -8.836  -17.107 -8.220  3.614  -0.119 -0.802 C13 I55 11 
I55 N1  N1  N 0 1 N N N -13.342 -12.370 -10.844 -1.745 4.592  0.817  N1  I55 12 
I55 N2  N2  N 0 1 N N N -11.912 -15.328 -9.452  0.661  2.253  -0.728 N2  I55 13 
I55 C3  C12 C 0 1 N N R -10.897 -15.741 -8.505  1.572  1.207  -0.257 C3  I55 14 
I55 N3  N3  N 0 1 N N N -12.218 -15.477 -6.538  -0.246 0.033  0.884  N3  I55 15 
I55 C1  C13 C 0 1 N N N -13.114 -13.829 -10.904 -1.036 4.008  -0.330 C1  I55 16 
I55 C2  C14 C 0 1 N N N -11.956 -14.119 -9.994  -0.099 2.932  0.155  C2  I55 17 
I55 O1  O1  O 0 1 N N N -11.167 -13.228 -9.703  -0.028 2.677  1.338  O1  I55 18 
I55 N4  N4  N 0 1 N N N -14.170 -14.612 -5.528  -2.562 -0.036 1.426  N4  I55 19 
I55 O2  O2  O 0 1 N N N -16.153 -13.573 -3.661  -4.862 -1.464 2.484  O2  I55 20 
I55 N5  N5  N 0 1 N N N -17.390 -15.458 -3.887  -5.580 -1.878 0.371  N5  I55 21 
I55 O3  O3  O 0 1 N N N -17.333 -16.612 -6.853  -4.322 0.226  -2.130 O3  I55 22 
I55 N6  N6  N 0 1 N N N -14.272 -16.705 -6.275  -1.925 -0.482 -0.728 N6  I55 23 
I55 O4  O4  O 0 1 N N N -10.487 -16.932 -6.453  1.712  -1.145 0.282  O4  I55 24 
I55 O5  O5  O 0 1 N N N -9.380  -18.922 -5.014  2.898  -3.737 -0.088 O5  I55 25 
I55 O6  O6  O 0 1 N N N -8.112  -15.967 -7.693  4.217  0.222  0.474  O6  I55 26 
I55 N7  N7  N 0 1 N N N -6.843  -14.169 -8.033  6.045  -0.025 1.903  N7  I55 27 
I55 O7  O7  O 0 1 N N N -6.908  -15.842 -9.585  5.967  -1.026 -0.077 O7  I55 28 
I55 C15 C15 C 0 1 N N S -9.892  -16.643 -9.210  2.711  1.028  -1.265 C15 I55 29 
I55 O8  O8  O 0 1 N N N -10.614 -17.754 -9.734  2.168  0.720  -2.550 O8  I55 30 
I55 H1  H1  H 0 1 N N N -12.153 -17.249 -7.655  0.363  -0.376 -1.081 H1  I55 31 
I55 H2  H2  H 0 1 N N N -16.098 -14.789 -6.354  -4.250 0.576  0.333  H2  I55 32 
I55 H3  H3  H 0 1 N N N -10.047 -18.695 -7.455  2.352  -1.668 -1.612 H3  I55 33 
I55 H4  H4  H 0 1 N N N -18.749 -16.777 -4.808  -6.289 -0.680 -1.166 H4  I55 34 
I55 H5  H5  H 0 1 N N N -17.593 -17.542 -3.665  -5.970 -2.361 -1.608 H5  I55 35 
I55 H6  H6  H 0 1 N N N -16.706 -18.230 -5.690  -3.965 -1.790 -2.411 H6  I55 36 
I55 H7  H7  H 0 1 N N N -15.078 -16.842 -4.335  -3.029 -2.188 -0.220 H7  I55 37 
I55 H8  H8  H 0 1 N N N -7.823  -18.897 -6.377  4.511  -2.652 -0.787 H8  I55 38 
I55 H9  H9  H 0 1 N N N -8.127  -17.352 -5.512  4.003  -2.284 0.879  H9  I55 39 
I55 H10 H10 H 0 1 N N N -8.148  -17.808 -8.715  4.396  -0.290 -1.541 H10 I55 40 
I55 H11 H11 H 0 1 N N N -14.109 -12.127 -11.438 -2.380 5.317  0.518  H11 I55 41 
I55 H12 H12 H 0 1 N N N -13.552 -12.104 -9.903  -2.230 3.881  1.343  H12 I55 42 
I55 H14 H14 H 0 1 N N N -12.616 -15.989 -9.710  0.604  2.456  -1.674 H14 I55 43 
I55 H15 H15 H 0 1 N N N -10.360 -14.850 -8.148  1.983  1.491  0.712  H15 I55 44 
I55 H16 H16 H 0 1 N N N -14.010 -14.368 -10.562 -1.759 3.575  -1.021 H16 I55 45 
I55 H17 H17 H 0 1 N N N -12.874 -14.134 -11.933 -0.466 4.785  -0.839 H17 I55 46 
I55 H18 H18 H 0 1 N N N -13.799 -13.744 -5.198  -2.513 0.203  2.365  H18 I55 47 
I55 H19 H19 H 0 1 N N N -17.984 -15.141 -3.148  -6.169 -2.588 0.671  H19 I55 48 
I55 H20 H20 H 0 1 N N N -18.196 -16.981 -6.996  -4.974 0.333  -2.836 H20 I55 49 
I55 H21 H21 H 0 1 N N N -14.119 -17.475 -6.895  -1.477 -0.304 -1.570 H21 I55 50 
I55 H22 H22 H 0 1 N N N -8.823  -19.212 -4.301  3.395  -4.502 0.232  H22 I55 51 
I55 H23 H23 H 0 1 N N N -6.209  -13.604 -8.560  5.615  0.553  2.553  H23 I55 52 
I55 H24 H24 H 0 1 N N N -7.176  -13.851 -7.145  6.918  -0.403 2.092  H24 I55 53 
I55 H25 H25 H 0 1 N N N -9.407  -16.080 -10.021 3.293  1.948  -1.325 H25 I55 54 
I55 H26 H26 H 0 1 N N N -10.014 -18.339 -10.182 2.835  0.594  -3.239 H26 I55 55 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
I55 C1  N1  SING N N 1  
I55 C1  C2  SING N N 2  
I55 C2  O1  DOUB N N 3  
I55 C2  N2  SING N N 4  
I55 O8  C15 SING N N 5  
I55 O7  C14 DOUB N N 6  
I55 N2  C3  SING N N 7  
I55 C15 C3  SING N N 8  
I55 C15 C13 SING N N 9  
I55 C14 N7  SING N N 10 
I55 C14 O6  SING N N 11 
I55 C3  C4  SING N N 12 
I55 C13 O6  SING N N 13 
I55 C13 C11 SING N N 14 
I55 C4  N3  SING N N 15 
I55 C4  O4  SING N N 16 
I55 C11 O4  SING N N 17 
I55 C11 C12 SING N N 18 
I55 O3  C9  SING N N 19 
I55 N3  C5  DOUB N N 20 
I55 N6  C5  SING N N 21 
I55 N6  C10 SING N N 22 
I55 C5  N4  SING N N 23 
I55 C12 O5  SING N N 24 
I55 C9  C10 SING N N 25 
I55 C9  C8  SING N N 26 
I55 N4  C6  SING N N 27 
I55 C6  C10 SING N N 28 
I55 C6  C7  SING N N 29 
I55 C8  N5  SING N N 30 
I55 C7  N5  SING N N 31 
I55 C7  O2  DOUB N N 32 
I55 C4  H1  SING N N 33 
I55 C6  H2  SING N N 34 
I55 C11 H3  SING N N 35 
I55 C8  H4  SING N N 36 
I55 C8  H5  SING N N 37 
I55 C9  H6  SING N N 38 
I55 C10 H7  SING N N 39 
I55 C12 H8  SING N N 40 
I55 C12 H9  SING N N 41 
I55 C13 H10 SING N N 42 
I55 N1  H11 SING N N 43 
I55 N1  H12 SING N N 44 
I55 N2  H14 SING N N 45 
I55 C3  H15 SING N N 46 
I55 C1  H16 SING N N 47 
I55 C1  H17 SING N N 48 
I55 N4  H18 SING N N 49 
I55 N5  H19 SING N N 50 
I55 O3  H20 SING N N 51 
I55 N6  H21 SING N N 52 
I55 O5  H22 SING N N 53 
I55 N7  H23 SING N N 54 
I55 N7  H24 SING N N 55 
I55 C15 H25 SING N N 56 
I55 O8  H26 SING N N 57 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
I55 InChI            InChI                1.03  "InChI=1S/C15H25N7O8/c16-1-6(25)19-9-10(26)11(30-14(17)28)5(3-23)29-13(9)22-15-20-7-4(24)2-18-12(27)8(7)21-15/h4-5,7-11,13,23-24,26H,1-3,16H2,(H2,17,28)(H,18,27)(H,19,25)(H2,20,21,22)/t4-,5-,7-,8+,9-,10+,11+,13-/m1/s1" 
I55 InChIKey         InChI                1.03  CSLHSYMCGVEZTI-JJYCVBLVSA-N                                                                                                                                                                                                
I55 SMILES_CANONICAL CACTVS               3.385 "NCC(=O)N[C@@H]1[C@H](O)[C@@H](OC(N)=O)[C@@H](CO)O[C@H]1N=C2N[C@@H]3[C@H](O)CNC(=O)[C@H]3N2"                                                                                                                               
I55 SMILES           CACTVS               3.385 "NCC(=O)N[CH]1[CH](O)[CH](OC(N)=O)[CH](CO)O[CH]1N=C2N[CH]3[CH](O)CNC(=O)[CH]3N2"                                                                                                                                           
I55 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C1[C@H]([C@@H]2[C@@H](C(=O)N1)N/C(=N/[C@H]3[C@@H]([C@@H]([C@H]([C@H](O3)CO)OC(=O)N)O)NC(=O)CN)/N2)O"                                                                                                                      
I55 SMILES           "OpenEye OEToolkits" 2.0.7 "C1C(C2C(C(=O)N1)NC(=NC3C(C(C(C(O3)CO)OC(=O)N)O)NC(=O)CN)N2)O"                                                                                                                                                             
# 
_pdbx_chem_comp_identifier.comp_id           I55 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   2.0.7 
_pdbx_chem_comp_identifier.identifier        "[(2~{R},3~{R},4~{S},5~{R},6~{R})-6-[(~{E})-[(3~{a}~{S},7~{R},7~{a}~{S})-7-oxidanyl-4-oxidanylidene-3,3~{a},5,6,7,7~{a}-hexahydro-1~{H}-imidazo[4,5-c]pyridin-2-ylidene]amino]-5-(2-azanylethanoylamino)-2-(hydroxymethyl)-4-oxidanyl-oxan-3-yl] carbamate" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
I55 "Create component" 2022-06-09 PDBJ 
I55 "Initial release"  2023-05-31 RCSB 
# 
