data_GY5
#

_chem_comp.id                                   GY5
_chem_comp.name                                 "5-hydroxy-N-(2-methoxyethyl)-6-oxo-2-[(2S)-1-(phenoxyacetyl)pyrrolidin-2-yl]-1,6-dihydropyrimidine-4-carboxamide"
_chem_comp.type                                 NON-POLYMER
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C20 H24 N4 O6"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        SRI-29685
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2017-06-09
_chem_comp.pdbx_modified_date                   2021-03-01
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       416.428
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    GY5
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       5W3I
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
GY5  N     N1   N  0  1  N  N  N  24.234  -20.893   9.432  -1.182  -1.063   1.593  N     GY5   1  
GY5  C     C1   C  0  1  Y  N  N  25.371  -17.558   5.243  -7.164   0.757  -0.075  C     GY5   2  
GY5  O     O1   O  0  1  N  N  N  26.474  -21.144   9.678  -1.036   0.867   0.508  O     GY5   3  
GY5  C01   C2   C  0  1  N  N  N  22.705  -19.519   7.863   0.969  -1.430   0.508  C01   GY5   4  
GY5  C02   C3   C  0  1  N  N  N  22.702  -17.142   7.711   2.529  -0.625  -1.002  C02   GY5   5  
GY5  C03   C4   C  0  1  N  N  N  22.080  -17.201   6.483   2.287  -1.687  -1.859  C03   GY5   6  
GY5  C04   C5   C  0  1  N  N  N  21.722  -18.535   5.854   1.296  -2.687  -1.444  C04   GY5   7  
GY5  C05   C6   C  0  1  N  N  N  23.107  -15.826   8.443   3.525   0.411  -1.360  C05   GY5   8  
GY5  C06   C7   C  0  1  N  N  N  24.232  -14.875  10.596   4.897   2.341  -0.787  C06   GY5   9  
GY5  C07   C8   C  0  1  N  N  N  22.285  -20.649  10.914  -0.978  -2.679   3.351  C07   GY5  10  
GY5  C08   C9   C  0  1  N  N  N  21.849  -21.174   9.549   0.411  -2.540   2.675  C08   GY5  11  
GY5  C09   C10  C  0  1  N  N  S  23.019  -20.879   8.569   0.256  -1.261   1.825  C09   GY5  12  
GY5  C1    C11  C  0  1  N  N  N  25.575  -15.253  11.362   5.129   3.251   0.421  C1    GY5  13  
GY5  C10   C12  C  0  1  N  N  N  23.828  -20.533  10.816  -1.921  -2.167   2.234  C10   GY5  14  
GY5  C11   C13  C  0  1  N  N  N  25.573  -21.176   8.910  -1.734  -0.039   0.913  C11   GY5  15  
GY5  C12   C14  C  0  1  N  N  N  25.791  -21.551   7.319  -3.219  -0.018   0.657  C12   GY5  16  
GY5  C13   C15  C  0  1  Y  N  N  25.815  -16.595   6.153  -7.541   1.753  -0.956  C13   GY5  17  
GY5  C14   C16  C  0  1  Y  N  N  26.577  -17.016   7.235  -6.580   2.530  -1.577  C14   GY5  18  
GY5  C15   C17  C  0  1  Y  N  N  26.887  -18.373   7.398  -5.241   2.312  -1.318  C15   GY5  19  
GY5  C16   C18  C  0  1  Y  N  N  26.448  -19.360   6.486  -4.860   1.313  -0.434  C16   GY5  20  
GY5  C17   C19  C  0  1  Y  N  N  25.677  -18.912   5.403  -5.826   0.535   0.188  C17   GY5  21  
GY5  N01   N2   N  0  1  N  N  N  23.012  -18.359   8.401   1.852  -0.543   0.157  N01   GY5  22  
GY5  N02   N3   N  0  1  N  N  N  22.087  -19.662   6.650   0.669  -2.505  -0.261  N02   GY5  23  
GY5  N03   N4   N  0  1  N  N  N  23.742  -15.974   9.707   3.833   1.382  -0.478  N03   GY5  24  
GY5  O01   O2   O  0  1  N  N  N  21.749  -16.151   5.779   2.951  -1.804  -3.036  O01   GY5  25  
GY5  O02   O3   O  0  1  N  N  N  21.173  -18.686   4.792   1.036  -3.646  -2.151  O02   GY5  26  
GY5  O03   O4   O  0  1  N  N  N  22.891  -14.750   7.981   4.064   0.385  -2.449  O03   GY5  27  
GY5  O1    O5   O  0  1  N  N  N  26.751  -20.715   6.640  -3.543   1.096  -0.177  O1    GY5  28  
GY5  O11   O6   O  0  1  N  N  N  25.635  -16.653  11.690   5.611   2.473   1.518  O11   GY5  29  
GY5  C18   C20  C  0  1  N  N  N  26.292  -17.491  10.740   5.755   3.210   2.734  C18   GY5  30  
GY5  H     H1   H  0  1  N  N  N  24.777  -17.248   4.396  -7.917   0.154   0.413  H     GY5  31  
GY5  H10   H2   H  0  1  N  N  N  24.418  -13.982   9.981   4.604   2.944  -1.646  H10   GY5  32  
GY5  H03   H3   H  0  1  N  N  N  23.454  -14.652  11.341   5.816   1.802  -1.018  H03   GY5  33  
GY5  H05   H4   H  0  1  N  N  N  21.834  -19.666  11.114  -1.191  -3.719   3.595  H05   GY5  34  
GY5  H11   H5   H  0  1  N  N  N  21.999  -21.352  11.710  -1.045  -2.049   4.238  H11   GY5  35  
GY5  H07   H6   H  0  1  N  N  N  20.936  -20.658   9.217   1.194  -2.413   3.423  H07   GY5  36  
GY5  H06   H7   H  0  1  N  N  N  21.660  -22.256   9.601   0.621  -3.403   2.042  H06   GY5  37  
GY5  H08   H8   H  0  1  N  N  N  23.076  -21.677   7.814   0.666  -0.405   2.361  H08   GY5  38  
GY5  H13   H9   H  0  1  N  N  N  26.432  -15.002  10.720   5.865   4.013   0.165  H13   GY5  39  
GY5  H12   H10  H  0  1  N  N  N  25.630  -14.668  12.292   4.191   3.731   0.700  H12   GY5  40  
GY5  H1    H11  H  0  1  N  N  N  24.299  -21.221  11.533  -2.853  -1.801   2.662  H1    GY5  41  
GY5  H09   H12  H  0  1  N  N  N  24.139  -19.502  11.039  -2.119  -2.959   1.512  H09   GY5  42  
GY5  H2    H13  H  0  1  N  N  N  24.823  -21.452   6.806  -3.515  -0.942   0.160  H2    GY5  43  
GY5  H3    H14  H  0  1  N  N  N  26.135  -22.594   7.254  -3.751   0.071   1.604  H3    GY5  44  
GY5  H120  H15  H  0  0  N  N  N  25.572  -15.551   6.018  -8.587   1.924  -1.160  H120  GY5  45  
GY5  H130  H16  H  0  0  N  N  N  26.933  -16.294   7.955  -6.877   3.307  -2.265  H130  GY5  46  
GY5  H14   H17  H  0  1  N  N  N  27.481  -18.675   8.248  -4.491   2.918  -1.804  H14   GY5  47  
GY5  H15   H18  H  0  1  N  N  N  25.313  -19.627   4.680  -5.532  -0.243   0.877  H15   GY5  48  
GY5  H01   H19  H  0  1  N  N  N  21.886  -20.581   6.312   0.004  -3.144   0.039  H01   GY5  49  
GY5  H04   H20  H  0  1  N  N  N  23.875  -16.909  10.035   3.352   1.446   0.362  H04   GY5  50  
GY5  H02   H21  H  0  1  N  N  N  21.329  -16.429   4.973   2.702  -2.582  -3.552  H02   GY5  51  
GY5  H112  H22  H  0  0  N  N  N  26.276  -18.532  11.096   6.394   4.076   2.560  H112  GY5  52  
GY5  H111  H23  H  0  0  N  N  N  25.772  -17.426   9.773   4.775   3.543   3.076  H111  GY5  53  
GY5  H113  H24  H  0  0  N  N  N  27.334  -17.161  10.619   6.208   2.572   3.494  H113  GY5  54  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
GY5  O02  C04   DOUB  N  N   1  
GY5  C    C17   DOUB  Y  N   2  
GY5  C    C13   SING  Y  N   3  
GY5  C17  C16   SING  Y  N   4  
GY5  O01  C03   SING  N  N   5  
GY5  C04  C03   SING  N  N   6  
GY5  C04  N02   SING  N  N   7  
GY5  C13  C14   DOUB  Y  N   8  
GY5  C03  C02   DOUB  N  N   9  
GY5  C16  O1    SING  N  N  10  
GY5  C16  C15   DOUB  Y  N  11  
GY5  O1   C12   SING  N  N  12  
GY5  N02  C01   SING  N  N  13  
GY5  C14  C15   SING  Y  N  14  
GY5  C12  C11   SING  N  N  15  
GY5  C02  N01   SING  N  N  16  
GY5  C02  C05   SING  N  N  17  
GY5  C01  N01   DOUB  N  N  18  
GY5  C01  C09   SING  N  N  19  
GY5  O03  C05   DOUB  N  N  20  
GY5  C05  N03   SING  N  N  21  
GY5  C09  N     SING  N  N  22  
GY5  C09  C08   SING  N  N  23  
GY5  C11  N     SING  N  N  24  
GY5  C11  O     DOUB  N  N  25  
GY5  N    C10   SING  N  N  26  
GY5  C08  C07   SING  N  N  27  
GY5  N03  C06   SING  N  N  28  
GY5  C06  C1    SING  N  N  29  
GY5  C18  O11   SING  N  N  30  
GY5  C10  C07   SING  N  N  31  
GY5  C1   O11   SING  N  N  32  
GY5  C    H     SING  N  N  33  
GY5  C06  H10   SING  N  N  34  
GY5  C06  H03   SING  N  N  35  
GY5  C07  H05   SING  N  N  36  
GY5  C07  H11   SING  N  N  37  
GY5  C08  H07   SING  N  N  38  
GY5  C08  H06   SING  N  N  39  
GY5  C09  H08   SING  N  N  40  
GY5  C1   H13   SING  N  N  41  
GY5  C1   H12   SING  N  N  42  
GY5  C10  H1    SING  N  N  43  
GY5  C10  H09   SING  N  N  44  
GY5  C12  H2    SING  N  N  45  
GY5  C12  H3    SING  N  N  46  
GY5  C13  H120  SING  N  N  47  
GY5  C14  H130  SING  N  N  48  
GY5  C15  H14   SING  N  N  49  
GY5  C17  H15   SING  N  N  50  
GY5  N02  H01   SING  N  N  51  
GY5  N03  H04   SING  N  N  52  
GY5  O01  H02   SING  N  N  53  
GY5  C18  H112  SING  N  N  54  
GY5  C18  H111  SING  N  N  55  
GY5  C18  H113  SING  N  N  56  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
GY5  SMILES            ACDLabs               12.01  "N1(CCCC1C2=NC(C(NCCOC)=O)=C(C(N2)=O)O)C(=O)COc3ccccc3"  
GY5  InChI             InChI                 1.03   "InChI=1S/C20H24N4O6/c1-29-11-9-21-19(27)16-17(26)20(28)23-18(22-16)14-8-5-10-24(14)15(25)12-30-13-6-3-2-4-7-13/h2-4,6-7,14,26H,5,8-12H2,1H3,(H,21,27)(H,22,23,28)/t14-/m0/s1"  
GY5  InChIKey          InChI                 1.03   QXPINDFCNAGJSF-AWEZNQCLSA-N  
GY5  SMILES_CANONICAL  CACTVS                3.385  "COCCNC(=O)C1=C(O)C(=O)NC(=N1)[C@@H]2CCCN2C(=O)COc3ccccc3"  
GY5  SMILES            CACTVS                3.385  "COCCNC(=O)C1=C(O)C(=O)NC(=N1)[CH]2CCCN2C(=O)COc3ccccc3"  
GY5  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.6  "COCCNC(=O)C1=C(C(=O)NC(=N1)[C@@H]2CCCN2C(=O)COc3ccccc3)O"  
GY5  SMILES            "OpenEye OEToolkits"  2.0.6  "COCCNC(=O)C1=C(C(=O)NC(=N1)C2CCCN2C(=O)COc3ccccc3)O"  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
GY5  "SYSTEMATIC NAME"  ACDLabs               12.01  "5-hydroxy-N-(2-methoxyethyl)-6-oxo-2-[(2S)-1-(phenoxyacetyl)pyrrolidin-2-yl]-1,6-dihydropyrimidine-4-carboxamide"  
GY5  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  2.0.6  "~{N}-(2-methoxyethyl)-5-oxidanyl-6-oxidanylidene-2-[(2~{S})-1-(2-phenoxyethanoyl)pyrrolidin-2-yl]-1~{H}-pyrimidine-4-carboxamide"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
GY5  "Create component"  2017-06-09  RCSB  
GY5  "Initial release"   2017-12-27  RCSB  
GY5  "Modify synonyms"   2021-03-01  PDBE  
#
_pdbx_chem_comp_synonyms.ordinal     1
_pdbx_chem_comp_synonyms.comp_id     GY5
_pdbx_chem_comp_synonyms.name        SRI-29685
_pdbx_chem_comp_synonyms.provenance  ?
_pdbx_chem_comp_synonyms.type        ?
##
