data_G35
# 
_chem_comp.id                                    G35 
_chem_comp.name                                  "(5R)-5-carbamimidamido-1-(2-deoxy-5-O-phosphono-beta-D-erythro-pentofuranosyl)imidazolidine-2,4-dione" 
_chem_comp.type                                  "DNA linking" 
_chem_comp.pdbx_type                             ATOMN 
_chem_comp.formula                               "C9 H16 N5 O8 P" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2010-02-24 
_chem_comp.pdbx_modified_date                    2011-06-04 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        353.226 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     G35 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        ? 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
G35 P      P      P 0 1 N N N 24.164 -11.985 68.007 -4.468 0.877  0.524  P      G35 1  
G35 C2     C2     C 0 1 N N N 28.999 -7.345  65.786 3.597  2.109  -1.114 C2     G35 2  
G35 N3     N3     N 0 1 N N N 28.085 -8.230  66.182 3.272  1.479  0.064  N3     G35 3  
G35 C4     C4     C 0 1 N N R 26.727 -8.297  65.624 3.391  0.023  0.172  C4     G35 4  
G35 C5     C5     C 0 1 N N N 26.260 -6.927  65.131 3.981  -0.366 1.514  C5     G35 5  
G35 O5     O5     O 0 1 N N N 26.018 -5.965  65.858 5.073  -0.068 1.947  O5     G35 6  
G35 N7     N7     N 0 1 N N N 26.116 -6.946  63.809 3.038  -1.110 2.125  N7     G35 7  
G35 C8     C8     C 0 1 N N N 26.415 -8.166  63.357 1.946  -1.245 1.363  C8     G35 8  
G35 O8     O8     O 0 1 N N N 26.394 -8.475  62.167 0.961  -1.873 1.700  O8     G35 9  
G35 N9     N9     N 0 1 N N N 26.759 -9.000  64.335 2.060  -0.608 0.180  N9     G35 10 
G35 "C1'"  "C1'"  C 0 1 N N R 27.118 -10.402 64.151 1.054  -0.551 -0.884 "C1'"  G35 11 
G35 N11    N11    N 0 1 N N N 30.198 -7.340  66.360 3.485  3.476  -1.216 N11    G35 12 
G35 N12    N12    N 0 1 N N N 28.728 -6.458  64.833 4.012  1.411  -2.134 N12    G35 13 
G35 "C2'"  "C2'"  C 0 1 N N N 27.792 -11.044 65.354 0.824  -1.961 -1.462 "C2'"  G35 14 
G35 "C3'"  "C3'"  C 0 1 N N S 27.377 -12.499 65.224 -0.686 -2.220 -1.241 "C3'"  G35 15 
G35 "O3'"  "O3'"  O 0 1 N N N 28.217 -13.154 64.300 -1.264 -2.866 -2.377 "O3'"  G35 16 
G35 "C4'"  "C4'"  C 0 1 N N R 25.990 -12.420 64.593 -1.242 -0.783 -1.078 "C4'"  G35 17 
G35 "O4'"  "O4'"  O 0 1 N N N 25.909 -11.125 63.955 -0.201 -0.100 -0.347 "O4'"  G35 18 
G35 "C5'"  "C5'"  C 0 1 N N N 24.860 -12.602 65.574 -2.544 -0.796 -0.275 "C5'"  G35 19 
G35 "O5'"  "O5'"  O 0 1 N N N 25.113 -11.840 66.745 -3.095 0.522  -0.238 "O5'"  G35 20 
G35 OP3    OP3    O 0 1 N Y N 22.772 -11.913 67.494 -4.716 2.467  0.469  OP3    G35 21 
G35 OP2    OP2    O 0 1 N N N 24.617 -11.027 69.041 -5.693 0.118  -0.195 OP2    G35 22 
G35 HN3    HN3    H 0 1 N N N 28.336 -8.883  66.896 2.963  1.998  0.823  HN3    G35 23 
G35 H4     H4     H 0 1 N N N 26.109 -8.744  66.416 3.998  -0.373 -0.642 H4     G35 24 
G35 HN7    HN7    H 0 1 N N N 25.830 -6.172  63.245 3.139  -1.500 3.007  HN7    G35 25 
G35 "H1'"  "H1'"  H 0 1 N N N 27.824 -10.435 63.308 1.387  0.123  -1.673 "H1'"  G35 26 
G35 HN11   HN11   H 0 0 N N N 30.886 -6.673  66.074 3.176  3.995  -0.457 HN11   G35 27 
G35 HN1A   HN1A   H 0 0 N N N 30.412 -8.003  67.078 3.715  3.921  -2.046 HN1A   G35 28 
G35 HN12   HN12   H 0 0 N N N 29.505 -5.856  64.650 4.241  1.856  -2.964 HN12   G35 29 
G35 "H2'"  "H2'"  H 0 1 N N N 28.885 -10.925 65.323 1.063  -1.980 -2.526 "H2'"  G35 30 
G35 "H2'A" "H2'A" H 0 0 N N N 27.448 -10.603 66.301 1.423  -2.696 -0.925 "H2'A" G35 31 
G35 "H3'"  "H3'"  H 0 1 N N N 27.416 -13.032 66.185 -0.851 -2.806 -0.337 "H3'"  G35 32 
G35 "HO3'" "HO3'" H 0 0 N N N 27.954 -14.064 64.222 -0.884 -3.733 -2.573 "HO3'" G35 33 
G35 "H4'"  "H4'"  H 0 1 N N N 25.872 -13.248 63.879 -1.398 -0.319 -2.052 "H4'"  G35 34 
G35 "H5'"  "H5'"  H 0 1 N N N 23.920 -12.263 65.114 -3.255 -1.475 -0.747 "H5'"  G35 35 
G35 "H5'A" "H5'A" H 0 0 N N N 24.777 -13.666 65.842 -2.340 -1.133 0.742  "H5'A" G35 36 
G35 HOP3   HOP3   H 0 0 N Y N 22.639 -12.590 66.841 -5.527 2.754  0.910  HOP3   G35 37 
G35 HOP2   HOP2   H 0 0 N N N 25.522 -10.789 68.878 -5.812 0.357  -1.124 HOP2   G35 38 
G35 OP1    OP1    O 0 1 N N N 25.654 -11.176 68.295 -4.376 0.440  1.935  OP1    G35 39 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
G35 P     OP2    SING N N 1  
G35 C2    N3     SING N N 2  
G35 C2    N11    SING N N 3  
G35 N3    HN3    SING N N 4  
G35 C4    N3     SING N N 5  
G35 C4    H4     SING N N 6  
G35 C5    C4     SING N N 7  
G35 C5    O5     DOUB N N 8  
G35 N7    C5     SING N N 9  
G35 N7    HN7    SING N N 10 
G35 C8    N7     SING N N 11 
G35 C8    N9     SING N N 12 
G35 O8    C8     DOUB N N 13 
G35 N9    C4     SING N N 14 
G35 "C1'" N9     SING N N 15 
G35 "C1'" "C2'"  SING N N 16 
G35 "C1'" "H1'"  SING N N 17 
G35 N11   HN11   SING N N 18 
G35 N11   HN1A   SING N N 19 
G35 N12   C2     DOUB N N 20 
G35 N12   HN12   SING N N 21 
G35 "C2'" "H2'"  SING N N 22 
G35 "C2'" "H2'A" SING N N 23 
G35 "C3'" "C2'"  SING N N 24 
G35 "C3'" "H3'"  SING N N 25 
G35 "O3'" "C3'"  SING N N 26 
G35 "O3'" "HO3'" SING N N 27 
G35 "C4'" "C3'"  SING N N 28 
G35 "C4'" "C5'"  SING N N 29 
G35 "C4'" "H4'"  SING N N 30 
G35 "O4'" "C1'"  SING N N 31 
G35 "O4'" "C4'"  SING N N 32 
G35 "C5'" "O5'"  SING N N 33 
G35 "C5'" "H5'"  SING N N 34 
G35 "C5'" "H5'A" SING N N 35 
G35 "O5'" P      SING N N 36 
G35 OP3   P      SING N N 37 
G35 OP3   HOP3   SING N N 38 
G35 OP2   HOP2   SING N N 39 
G35 P     OP1    DOUB N N 40 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
G35 SMILES_CANONICAL CACTVS               3.352 "NC(=N)N[C@@H]1N([C@H]2C[C@H](O)[C@@H](CO[P](O)(O)=O)O2)C(=O)NC1=O"                                                                                             
G35 SMILES           CACTVS               3.352 "NC(=N)N[CH]1N([CH]2C[CH](O)[CH](CO[P](O)(O)=O)O2)C(=O)NC1=O"                                                                                                   
G35 SMILES_CANONICAL "OpenEye OEToolkits" 1.7.0 "[H]/N=C(\N)/N[C@H]1C(=O)NC(=O)N1[C@H]2C[C@@H]([C@H](O2)COP(=O)(O)O)O"                                                                                          
G35 SMILES           "OpenEye OEToolkits" 1.7.0 "C1C(C(OC1N2C(C(=O)NC2=O)NC(=N)N)COP(=O)(O)O)O"                                                                                                                 
G35 InChI            InChI                1.03  "InChI=1S/C9H16N5O8P/c10-8(11)12-6-7(16)13-9(17)14(6)5-1-3(15)4(22-5)2-21-23(18,19)20/h3-6,15H,1-2H2,(H4,10,11,12)(H,13,16,17)(H2,18,19,20)/t3-,4+,5+,6+/m0/s1" 
G35 InChIKey         InChI                1.03  IMJMAQUBWVPHQG-SLPGGIOYSA-N                                                                                                                                     
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
G35 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.6.1 "[(2R,3S,5R)-5-[(5R)-5-carbamimidamido-2,4-dioxo-imidazolidin-1-yl]-3-hydroxy-oxolan-2-yl]methyl dihydrogen phosphate" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
G35 "Create component"  2010-02-24 RCSB 
G35 "Modify descriptor" 2011-06-04 RCSB 
# 
