data_DK5
# 
_chem_comp.id                                    DK5 
_chem_comp.name                                  "1-(2,3-dideoxy-3-fluoro-beta-D-arabino-hexopyranosyl)-4-[(phenylcarbonyl)amino]pyrimidin-2(1H)-one" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C17 H18 F N3 O5" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2010-01-13 
_chem_comp.pdbx_modified_date                    2011-06-04 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        363.340 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     DK5 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        3L7D 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
DK5 C1  C1  C 0 1 N N R 33.522 23.129 27.909 -2.523 0.343  0.855  C1  DK5 1  
DK5 N1  N1  N 0 1 N N N 34.441 23.754 28.899 -1.059 0.304  0.890  N1  DK5 2  
DK5 C2  C2  C 0 1 N N N 33.794 23.413 26.409 -2.982 1.551  0.034  C2  DK5 3  
DK5 N2  N2  N 0 1 N N N 34.643 24.807 31.020 0.965  0.068  -0.243 N2  DK5 4  
DK5 C3  C3  C 0 1 N N R 32.859 22.581 25.504 -4.512 1.551  -0.049 C3  DK5 5  
DK5 F3  F3  F 0 1 N N N 33.379 22.490 24.234 -4.937 2.610  -0.857 F3  DK5 6  
DK5 N3  N3  N 0 1 N N N 36.635 25.508 31.895 3.024  0.178  0.876  N3  DK5 7  
DK5 C4  C4  C 0 1 N N R 32.601 21.153 26.020 -4.979 0.224  -0.656 C4  DK5 8  
DK5 O4  O4  O 0 1 N N N 31.459 20.644 25.320 -6.407 0.183  -0.671 O4  DK5 9  
DK5 C5  C5  C 0 1 N N R 32.362 21.075 27.548 -4.443 -0.933 0.192  C5  DK5 10 
DK5 O5  O5  O 0 1 N N N 33.475 21.700 28.234 -3.017 -0.855 0.253  O5  DK5 11 
DK5 C6  C6  C 0 1 N N N 32.295 19.607 28.018 -4.855 -2.263 -0.442 C6  DK5 12 
DK5 O6  O6  O 0 1 N N N 33.463 18.911 27.545 -4.456 -3.340 0.409  O6  DK5 13 
DK5 C7  C7  C 0 1 N N N 35.842 23.831 28.715 -0.405 0.467  2.073  C7  DK5 14 
DK5 C8  C8  C 0 1 N N N 36.622 24.429 29.717 0.949  0.428  2.093  C8  DK5 15 
DK5 C9  C9  C 0 1 N N N 35.978 24.922 30.875 1.644  0.221  0.885  C9  DK5 16 
DK5 C10 C10 C 0 1 N N N 33.864 24.245 30.079 -0.367 0.103  -0.247 C10 DK5 17 
DK5 O10 O10 O 0 1 N N N 32.638 24.170 30.240 -0.969 -0.045 -1.297 O10 DK5 18 
DK5 C11 C11 C 0 1 N N N 37.904 25.959 31.830 3.685  -0.021 -0.282 C11 DK5 19 
DK5 O11 O11 O 0 1 N N N 38.627 25.885 30.832 3.066  -0.162 -1.318 O11 DK5 20 
DK5 C12 C12 C 0 1 Y N N 38.437 26.606 33.123 5.162  -0.067 -0.291 C12 DK5 21 
DK5 C13 C13 C 0 1 Y N N 39.381 27.640 33.038 5.876  0.089  0.898  C13 DK5 22 
DK5 C14 C14 C 0 1 Y N N 39.879 28.237 34.201 7.255  0.045  0.882  C14 DK5 23 
DK5 C15 C15 C 0 1 Y N N 39.428 27.810 35.452 7.930  -0.154 -0.309 C15 DK5 24 
DK5 C16 C16 C 0 1 Y N N 38.481 26.788 35.534 7.228  -0.309 -1.491 C16 DK5 25 
DK5 C17 C17 C 0 1 Y N N 37.989 26.183 34.373 5.849  -0.272 -1.489 C17 DK5 26 
DK5 H1  H1  H 0 1 N N N 32.538 23.610 28.013 -2.909 0.426  1.871  H1  DK5 27 
DK5 H2  H2  H 0 1 N N N 33.622 24.481 26.212 -2.644 2.468  0.515  H2  DK5 28 
DK5 H2A H2A H 0 1 N N N 34.837 23.150 26.180 -2.562 1.490  -0.970 H2A DK5 29 
DK5 H3  H3  H 0 1 N N N 31.898 23.116 25.507 -4.931 1.662  0.951  H3  DK5 30 
DK5 HN3 HN3 H 0 1 N N N 36.147 25.616 32.761 3.518  0.291  1.703  HN3 DK5 31 
DK5 H4  H4  H 0 1 N N N 33.503 20.553 25.832 -4.600 0.136  -1.674 H4  DK5 32 
DK5 HO4 HO4 H 0 1 N N N 31.273 19.761 25.617 -6.816 0.891  -1.186 HO4 DK5 33 
DK5 H5  H5  H 0 1 N N N 31.412 21.583 27.773 -4.854 -0.867 1.199  H5  DK5 34 
DK5 H6  H6  H 0 1 N N N 32.263 19.572 29.117 -5.937 -2.284 -0.571 H6  DK5 35 
DK5 H6A H6A H 0 1 N N N 31.391 19.130 27.613 -4.371 -2.369 -1.413 H6A DK5 36 
DK5 HO6 HO6 H 0 1 N N N 33.430 18.005 27.830 -4.685 -4.215 0.070  HO6 DK5 37 
DK5 H7  H7  H 0 1 N N N 36.302 23.437 27.821 -0.960 0.625  2.987  H7  DK5 38 
DK5 H8  H8  H 0 1 N N N 37.693 24.511 29.606 1.488  0.555  3.020  H8  DK5 39 
DK5 H13 H13 H 0 1 N N N 39.725 27.977 32.071 5.350  0.245  1.829  H13 DK5 40 
DK5 H14 H14 H 0 1 N N N 40.612 29.027 34.132 7.808  0.166  1.802  H14 DK5 41 
DK5 H15 H15 H 0 1 N N N 39.810 28.269 36.352 9.009  -0.188 -0.316 H15 DK5 42 
DK5 H16 H16 H 0 1 N N N 38.126 26.462 36.500 7.762  -0.463 -2.418 H16 DK5 43 
DK5 H17 H17 H 0 1 N N N 37.262 25.388 34.445 5.303  -0.398 -2.412 H17 DK5 44 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
DK5 C2  C1  SING N N 1  
DK5 C1  O5  SING N N 2  
DK5 C1  N1  SING N N 3  
DK5 C1  H1  SING N N 4  
DK5 C7  N1  SING N N 5  
DK5 N1  C10 SING N N 6  
DK5 C3  C2  SING N N 7  
DK5 C2  H2  SING N N 8  
DK5 C2  H2A SING N N 9  
DK5 C10 N2  SING N N 10 
DK5 C9  N2  DOUB N N 11 
DK5 F3  C3  SING N N 12 
DK5 C3  C4  SING N N 13 
DK5 C3  H3  SING N N 14 
DK5 C9  N3  SING N N 15 
DK5 C11 N3  SING N N 16 
DK5 N3  HN3 SING N N 17 
DK5 O4  C4  SING N N 18 
DK5 C4  C5  SING N N 19 
DK5 C4  H4  SING N N 20 
DK5 O4  HO4 SING N N 21 
DK5 C5  C6  SING N N 22 
DK5 C5  O5  SING N N 23 
DK5 C5  H5  SING N N 24 
DK5 O6  C6  SING N N 25 
DK5 C6  H6  SING N N 26 
DK5 C6  H6A SING N N 27 
DK5 O6  HO6 SING N N 28 
DK5 C7  C8  DOUB N N 29 
DK5 C7  H7  SING N N 30 
DK5 C8  C9  SING N N 31 
DK5 C8  H8  SING N N 32 
DK5 C10 O10 DOUB N N 33 
DK5 O11 C11 DOUB N N 34 
DK5 C11 C12 SING N N 35 
DK5 C13 C12 DOUB Y N 36 
DK5 C12 C17 SING Y N 37 
DK5 C13 C14 SING Y N 38 
DK5 C13 H13 SING N N 39 
DK5 C14 C15 DOUB Y N 40 
DK5 C14 H14 SING N N 41 
DK5 C15 C16 SING Y N 42 
DK5 C15 H15 SING N N 43 
DK5 C17 C16 DOUB Y N 44 
DK5 C16 H16 SING N N 45 
DK5 C17 H17 SING N N 46 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
DK5 SMILES_CANONICAL CACTVS               3.352 "OC[C@H]1O[C@H](C[C@@H](F)[C@@H]1O)N2C=CC(=NC2=O)NC(=O)c3ccccc3"                                                                                                           
DK5 SMILES           CACTVS               3.352 "OC[CH]1O[CH](C[CH](F)[CH]1O)N2C=CC(=NC2=O)NC(=O)c3ccccc3"                                                                                                                 
DK5 SMILES_CANONICAL "OpenEye OEToolkits" 1.7.0 "c1ccc(cc1)C(=O)NC2=NC(=O)N(C=C2)[C@H]3C[C@H]([C@@H]([C@H](O3)CO)O)F"                                                                                                      
DK5 SMILES           "OpenEye OEToolkits" 1.7.0 "c1ccc(cc1)C(=O)NC2=NC(=O)N(C=C2)C3CC(C(C(O3)CO)O)F"                                                                                                                       
DK5 InChI            InChI                1.03  "InChI=1S/C17H18FN3O5/c18-11-8-14(26-12(9-22)15(11)23)21-7-6-13(20-17(21)25)19-16(24)10-4-2-1-3-5-10/h1-7,11-12,14-15,22-23H,8-9H2,(H,19,20,24,25)/t11-,12-,14-,15+/m1/s1" 
DK5 InChIKey         InChI                1.03  JDMVJAAWOFCRPK-GBOPCIDUSA-N                                                                                                                                                
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
DK5 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.6.1 "N-[1-[(2R,4R,5R,6R)-4-fluoro-5-hydroxy-6-(hydroxymethyl)oxan-2-yl]-2-oxo-pyrimidin-4-yl]benzamide" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
DK5 "Create component"     2010-01-13 RCSB 
DK5 "Modify aromatic_flag" 2011-06-04 RCSB 
DK5 "Modify descriptor"    2011-06-04 RCSB 
# 
