data_CM5
#

_chem_comp.id                                   CM5
_chem_comp.name                                 5-CYCLOHEXYL-1-PENTYL-BETA-D-MALTOSIDE
_chem_comp.type                                 NON-POLYMER
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C23 H42 O11"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        "5-CYCLOHEXYLPENTYL 4-O-ALPHA-D-GLUCOPYRANOSYL-BETA-D-GLUCOPYRANOSIDE; CYMAL-5"
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2005-10-27
_chem_comp.pdbx_modified_date                   2020-06-17
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       494.573
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    CM5
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       ?
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       2BDM
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
CM5  C7    C7    C  0  1  N  N  N  95.194  36.050  15.024   9.533   0.953  -1.391  C7    CM5   1  
CM5  C8    C8    C  0  1  N  N  N  95.165  35.396  16.408  10.966   0.759  -0.891  C8    CM5   2  
CM5  C9    C9    C  0  1  N  N  N  96.584  35.215  16.953  11.086   1.301   0.535  C9    CM5   3  
CM5  C10   C10   C  0  1  N  N  N  97.319  36.557  16.994  10.120   0.547   1.450  C10   CM5   4  
CM5  C11   C11   C  0  1  N  N  N  97.346  37.199  15.604   8.687   0.741   0.950  C11   CM5   5  
CM5  C6    C6    C  0  1  N  N  N  95.922  37.395  15.074   8.567   0.199  -0.476  C6    CM5   6  
CM5  C5    C5    C  0  1  N  N  N  95.953  38.042  13.688   7.134   0.393  -0.976  C5    CM5   7  
CM5  C4    C4    C  0  1  N  N  N  94.551  38.520  13.302   6.180  -0.460  -0.137  C4    CM5   8  
CM5  C3    C3    C  0  1  N  N  N  94.469  39.110  11.893   4.748  -0.265  -0.637  C3    CM5   9  
CM5  C2    C2    C  0  1  N  N  N  95.357  40.341  11.698   3.794  -1.118   0.202  C2    CM5  10  
CM5  C1    C1    C  0  1  N  N  N  94.758  41.235  10.610   2.362  -0.924  -0.299  C1    CM5  11  
CM5  O12   O12   O  0  1  N  N  N  93.541  41.770  11.152   1.471  -1.721   0.485  O12   CM5  12  
CM5  C13   C13   C  0  1  N  N  R  92.651  42.279  10.148   0.156  -1.497  -0.028  C13   CM5  13  
CM5  C18   C18   C  0  1  N  N  R  91.363  42.723  10.848  -0.833  -2.418   0.689  C18   CM5  14  
CM5  O22   O22   O  0  1  N  N  N  90.728  41.578  11.423  -0.448  -3.781   0.494  O22   CM5  15  
CM5  C17   C17   C  0  1  N  N  R  90.406  43.380   9.851  -2.234  -2.194   0.109  C17   CM5  16  
CM5  O21   O21   O  0  1  N  N  N  89.314  43.964  10.564  -3.194  -2.934   0.866  O21   CM5  17  
CM5  O14   O14   O  0  1  N  N  N  93.234  43.381   9.431  -0.209  -0.135   0.186  O14   CM5  18  
CM5  C15   C15   C  0  1  N  N  R  92.353  43.867   8.404  -1.443   0.095  -0.493  C15   CM5  19  
CM5  C19   C19   C  0  1  N  N  N  93.072  44.890   7.520  -1.777   1.587  -0.450  C19   CM5  20  
CM5  O20   O20   O  0  1  N  N  N  93.504  46.000   8.312  -0.776   2.320  -1.159  O20   CM5  21  
CM5  C16   C16   C  0  1  N  N  S  91.113  44.474   9.046  -2.563  -0.699   0.184  C16   CM5  22  
CM5  O23   O23   O  0  1  N  N  N  90.209  44.992   8.058  -3.800  -0.446  -0.485  O23   CM5  23  
CM5  C24   C24   C  0  1  N  N  R  89.449  46.089   8.590  -4.840  -0.687   0.464  C24   CM5  24  
CM5  O25   O25   O  0  1  N  N  N  90.123  47.323   8.293  -4.893   0.394   1.394  O25   CM5  25  
CM5  C26   C26   C  0  1  N  N  R  90.354  47.527   6.887  -4.981   1.604   0.644  C26   CM5  26  
CM5  C30   C30   C  0  1  N  N  N  91.042  48.887   6.745  -4.847   2.799   1.590  C30   CM5  27  
CM5  O31   O31   O  0  1  N  N  N  91.317  49.163   5.369  -3.541   2.804   2.170  O31   CM5  28  
CM5  C27   C27   C  0  1  N  N  S  89.031  47.538   6.115  -6.331   1.671  -0.073  C27   CM5  29  
CM5  O32   O32   O  0  1  N  N  N  89.293  47.557   4.709  -6.426   2.898  -0.800  O32   CM5  30  
CM5  C28   C28   C  0  1  N  N  S  88.208  46.287   6.432  -6.440   0.490  -1.044  C28   CM5  31  
CM5  O33   O33   O  0  1  N  N  N  86.916  46.408   5.831  -7.751   0.452  -1.612  O33   CM5  32  
CM5  C29   C29   C  0  1  N  N  R  88.061  46.125   7.946  -6.178  -0.806  -0.269  C29   CM5  33  
CM5  O34   O34   O  0  1  N  N  N  87.349  44.922   8.244  -6.129  -1.908  -1.178  O34   CM5  34  
CM5  H71   1H7   H  0  1  N  N  N  94.170  36.151  14.594   9.448   0.567  -2.407  H71   CM5  35  
CM5  H72   2H7   H  0  1  N  N  N  95.633  35.371  14.256   9.287   2.015  -1.384  H72   CM5  36  
CM5  H81   1H8   H  0  1  N  N  N  94.601  34.434  16.398  11.212  -0.303  -0.898  H81   CM5  37  
CM5  H82   2H8   H  0  1  N  N  N  94.519  35.963  17.119  11.655   1.296  -1.543  H82   CM5  38  
CM5  H91   1H9   H  0  1  N  N  N  97.154  34.448  16.378  12.107   1.162   0.891  H91   CM5  39  
CM5  H92   2H9   H  0  1  N  N  N  96.585  34.712  17.948  10.840   2.362   0.542  H92   CM5  40  
CM5  H101  1H10  H  0  0  N  N  N  98.343  36.455  17.423  10.366  -0.515   1.443  H101  CM5  41  
CM5  H102  2H10  H  0  0  N  N  N  96.886  37.243  17.759  10.205   0.933   2.466  H102  CM5  42  
CM5  H111  1H11  H  0  0  N  N  N  97.977  36.618  14.892   8.441   1.803   0.957  H111  CM5  43  
CM5  H112  2H11  H  0  0  N  N  N  97.925  38.152  15.599   7.998   0.204   1.602  H112  CM5  44  
CM5  H6    H6    H  0  1  N  N  N  95.370  38.075  15.764   8.813  -0.863  -0.483  H6    CM5  45  
CM5  H51   1H5   H  0  1  N  N  N  96.389  37.362  12.919   7.070   0.089  -2.021  H51   CM5  46  
CM5  H52   2H5   H  0  1  N  N  N  96.706  38.862  13.626   6.857   1.444  -0.886  H52   CM5  47  
CM5  H41   1H4   H  0  1  N  N  N  94.161  39.244  14.055   6.245  -0.156   0.908  H41   CM5  48  
CM5  H42   2H4   H  0  1  N  N  N  93.807  37.700  13.429   6.458  -1.510  -0.228  H42   CM5  49  
CM5  H31A  1H3   H  0  0  N  N  N  93.412  39.337  11.620   4.683  -0.569  -1.682  H31A  CM5  50  
CM5  H32A  2H3   H  0  0  N  N  N  94.695  38.334  11.125   4.471   0.785  -0.547  H32A  CM5  51  
CM5  H21A  1H2   H  0  0  N  N  N  96.416  40.067  11.482   3.859  -0.814   1.246  H21A  CM5  52  
CM5  H22A  2H2   H  0  0  N  N  N  95.527  40.894  12.652   4.071  -2.169   0.111  H22A  CM5  53  
CM5  H11   1H1   H  0  1  N  N  N  94.616  40.712   9.636   2.297  -1.228  -1.343  H11   CM5  54  
CM5  H12   2H1   H  0  1  N  N  N  95.462  42.019  10.244   2.084   0.126  -0.208  H12   CM5  55  
CM5  H13   H13   H  0  1  N  N  N  92.441  41.481   9.399   0.143  -1.712  -1.097  H13   CM5  56  
CM5  H18   H18   H  0  1  N  N  N  91.619  43.465  11.640  -0.839  -2.189   1.754  H18   CM5  57  
CM5  H22   H22   H  0  1  N  N  N  89.929  41.853  11.857   0.437  -3.878   0.872  H22   CM5  58  
CM5  H17   H17   H  0  1  N  N  N  90.042  42.597   9.146  -2.257  -2.521  -0.931  H17   CM5  59  
CM5  H21   H21   H  0  1  N  N  N  88.720  44.372   9.945  -2.950  -3.867   0.791  H21   CM5  60  
CM5  H15   H15   H  0  1  N  N  N  92.041  43.018   7.753  -1.350  -0.226  -1.530  H15   CM5  61  
CM5  H191  1H19  H  0  0  N  N  N  92.444  45.211   6.656  -2.748   1.756  -0.914  H191  CM5  62  
CM5  H192  2H19  H  0  0  N  N  N  93.912  44.432   6.948  -1.807   1.923   0.587  H192  CM5  63  
CM5  H20   H20   H  0  1  N  N  N  93.950  46.635   7.764  -1.024   3.253  -1.108  H20   CM5  64  
CM5  H16   H16   H  0  1  N  N  N  91.424  45.320   9.703  -2.645  -0.395   1.228  H16   CM5  65  
CM5  H24   H24   H  0  1  N  N  N  89.348  45.958   9.693  -4.635  -1.614   0.999  H24   CM5  66  
CM5  H26   H26   H  0  1  N  N  N  90.981  46.704   6.472  -4.178   1.633  -0.093  H26   CM5  67  
CM5  H301  1H30  H  0  0  N  N  N  91.960  48.957   7.375  -5.595   2.724   2.379  H301  CM5  68  
CM5  H302  2H30  H  0  0  N  N  N  90.452  49.703   7.223  -5.000   3.723   1.032  H302  CM5  69  
CM5  H31   H31   H  0  1  N  N  N  91.744  50.007   5.281  -3.499   3.571   2.757  H31   CM5  70  
CM5  H27   H27   H  0  1  N  N  N  88.461  48.447   6.420  -7.137   1.618   0.659  H27   CM5  71  
CM5  H32   H32   H  0  1  N  N  N  88.473  47.564   4.230  -7.286   2.895  -1.242  H32   CM5  72  
CM5  H28   H28   H  0  1  N  N  N  88.729  45.390   6.024  -5.701   0.597  -1.837  H28   CM5  73  
CM5  H33   H33   H  0  1  N  N  N  86.405  45.632   6.028  -7.777  -0.312  -2.204  H33   CM5  74  
CM5  H29   H29   H  0  1  N  N  N  87.487  46.989   8.356  -6.977  -0.966   0.455  H29   CM5  75  
CM5  H34   H34   H  0  1  N  N  N  86.488  44.944   7.844  -5.956  -2.699  -0.649  H34   CM5  76  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
CM5  C7   C8    SING  N  N   1  
CM5  C7   C6    SING  N  N   2  
CM5  C7   H71   SING  N  N   3  
CM5  C7   H72   SING  N  N   4  
CM5  C8   C9    SING  N  N   5  
CM5  C8   H81   SING  N  N   6  
CM5  C8   H82   SING  N  N   7  
CM5  C9   C10   SING  N  N   8  
CM5  C9   H91   SING  N  N   9  
CM5  C9   H92   SING  N  N  10  
CM5  C10  C11   SING  N  N  11  
CM5  C10  H101  SING  N  N  12  
CM5  C10  H102  SING  N  N  13  
CM5  C11  C6    SING  N  N  14  
CM5  C11  H111  SING  N  N  15  
CM5  C11  H112  SING  N  N  16  
CM5  C6   C5    SING  N  N  17  
CM5  C6   H6    SING  N  N  18  
CM5  C5   C4    SING  N  N  19  
CM5  C5   H51   SING  N  N  20  
CM5  C5   H52   SING  N  N  21  
CM5  C4   C3    SING  N  N  22  
CM5  C4   H41   SING  N  N  23  
CM5  C4   H42   SING  N  N  24  
CM5  C3   C2    SING  N  N  25  
CM5  C3   H31A  SING  N  N  26  
CM5  C3   H32A  SING  N  N  27  
CM5  C2   C1    SING  N  N  28  
CM5  C2   H21A  SING  N  N  29  
CM5  C2   H22A  SING  N  N  30  
CM5  C1   O12   SING  N  N  31  
CM5  C1   H11   SING  N  N  32  
CM5  C1   H12   SING  N  N  33  
CM5  O12  C13   SING  N  N  34  
CM5  C13  C18   SING  N  N  35  
CM5  C13  O14   SING  N  N  36  
CM5  C13  H13   SING  N  N  37  
CM5  C18  O22   SING  N  N  38  
CM5  C18  C17   SING  N  N  39  
CM5  C18  H18   SING  N  N  40  
CM5  O22  H22   SING  N  N  41  
CM5  C17  O21   SING  N  N  42  
CM5  C17  C16   SING  N  N  43  
CM5  C17  H17   SING  N  N  44  
CM5  O21  H21   SING  N  N  45  
CM5  O14  C15   SING  N  N  46  
CM5  C15  C19   SING  N  N  47  
CM5  C15  C16   SING  N  N  48  
CM5  C15  H15   SING  N  N  49  
CM5  C19  O20   SING  N  N  50  
CM5  C19  H191  SING  N  N  51  
CM5  C19  H192  SING  N  N  52  
CM5  O20  H20   SING  N  N  53  
CM5  C16  O23   SING  N  N  54  
CM5  C16  H16   SING  N  N  55  
CM5  O23  C24   SING  N  N  56  
CM5  C24  O25   SING  N  N  57  
CM5  C24  C29   SING  N  N  58  
CM5  C24  H24   SING  N  N  59  
CM5  O25  C26   SING  N  N  60  
CM5  C26  C30   SING  N  N  61  
CM5  C26  C27   SING  N  N  62  
CM5  C26  H26   SING  N  N  63  
CM5  C30  O31   SING  N  N  64  
CM5  C30  H301  SING  N  N  65  
CM5  C30  H302  SING  N  N  66  
CM5  O31  H31   SING  N  N  67  
CM5  C27  O32   SING  N  N  68  
CM5  C27  C28   SING  N  N  69  
CM5  C27  H27   SING  N  N  70  
CM5  O32  H32   SING  N  N  71  
CM5  C28  O33   SING  N  N  72  
CM5  C28  C29   SING  N  N  73  
CM5  C28  H28   SING  N  N  74  
CM5  O33  H33   SING  N  N  75  
CM5  C29  O34   SING  N  N  76  
CM5  C29  H29   SING  N  N  77  
CM5  O34  H34   SING  N  N  78  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
CM5  SMILES            ACDLabs               10.04  "O(CCCCCC1CCCCC1)C3OC(C(OC2OC(CO)C(O)C(O)C2O)C(O)C3O)CO"  
CM5  SMILES_CANONICAL  CACTVS                3.341  "OC[C@H]1O[C@H](O[C@H]2[C@H](O)[C@@H](O)[C@H](OCCCCCC3CCCCC3)O[C@@H]2CO)[C@H](O)[C@@H](O)[C@@H]1O"  
CM5  SMILES            CACTVS                3.341  "OC[CH]1O[CH](O[CH]2[CH](O)[CH](O)[CH](OCCCCCC3CCCCC3)O[CH]2CO)[CH](O)[CH](O)[CH]1O"  
CM5  SMILES_CANONICAL  "OpenEye OEToolkits"  1.5.0  "C1CCC(CC1)CCCCCO[C@H]2[C@@H]([C@H]([C@@H]([C@H](O2)CO)O[C@@H]3[C@@H]([C@H]([C@@H]([C@H](O3)CO)O)O)O)O)O"  
CM5  SMILES            "OpenEye OEToolkits"  1.5.0  "C1CCC(CC1)CCCCCOC2C(C(C(C(O2)CO)OC3C(C(C(C(O3)CO)O)O)O)O)O"  
CM5  InChI             InChI                 1.03   "InChI=1S/C23H42O11/c24-11-14-16(26)17(27)19(29)23(32-14)34-21-15(12-25)33-22(20(30)18(21)28)31-10-6-2-5-9-13-7-3-1-4-8-13/h13-30H,1-12H2/t14-,15-,16-,17+,18-,19-,20-,21-,22-,23-/m1/s1"  
CM5  InChIKey          InChI                 1.03   RVTGFZGNOSKUDA-ZNGNCRBCSA-N  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
CM5  "SYSTEMATIC NAME"  ACDLabs               10.04  "5-cyclohexylpentyl 4-O-alpha-D-glucopyranosyl-beta-D-glucopyranoside"  
CM5  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  1.5.0  "(2R,3R,4S,5S,6R)-2-[(2R,3S,4R,5R,6R)-6-(5-cyclohexylpentoxy)-4,5-dihydroxy-2-(hydroxymethyl)oxan-3-yl]oxy-6-(hydroxymethyl)oxane-3,4,5-triol"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
CM5  "Create component"   2005-10-27  RCSB  
CM5  "Modify descriptor"  2011-06-04  RCSB  
CM5  "Modify synonyms"    2020-06-05  PDBE  
#   #
loop_
_pdbx_chem_comp_synonyms.ordinal
_pdbx_chem_comp_synonyms.comp_id
_pdbx_chem_comp_synonyms.name
_pdbx_chem_comp_synonyms.provenance
_pdbx_chem_comp_synonyms.type
1  CM5  "5-CYCLOHEXYLPENTYL 4-O-ALPHA-D-GLUCOPYRANOSYL-BETA-D-GLUCOPYRANOSIDE"  ?  ?  
2  CM5  CYMAL-5                                                                 ?  ?  
##
