data_BP5
# 
_chem_comp.id                                    BP5 
_chem_comp.name                                  "3-(2,2'-BIPYRIDIN-5-YL)-L-ALANINE" 
_chem_comp.type                                  "L-PEPTIDE LINKING" 
_chem_comp.pdbx_type                             ATOMP 
_chem_comp.formula                               "C13 H13 N3 O2" 
_chem_comp.mon_nstd_parent_comp_id               ALA 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2007-05-23 
_chem_comp.pdbx_modified_date                    2024-09-27 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        243.261 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     BP5 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        ? 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
_chem_comp.pdbx_pcm                              Y 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
BP5 C9   C9   C 0 1 Y N N N N N -22.020 -9.884  21.951 -1.095 -0.086 0.650  C9   BP5 1  
BP5 C8   C8   C 0 1 Y N N N N N -22.776 -8.717  21.779 -0.434 1.133  0.714  C8   BP5 2  
BP5 C7   C7   C 0 1 Y N N N N N -22.432 -7.593  22.572 0.934  1.154  0.504  C7   BP5 3  
BP5 C6   C6   C 0 1 Y N N N N N -21.365 -7.685  23.511 1.597  -0.042 0.237  C6   BP5 4  
BP5 C5   C5   C 0 1 Y N N N N N -19.850 -4.277  25.316 5.755  0.008  -0.402 C5   BP5 5  
BP5 C4   C4   C 0 1 Y N N N N N -19.095 -5.405  25.031 5.034  1.158  -0.133 C4   BP5 6  
BP5 C3   C3   C 0 1 Y N N N N N -20.951 -6.554  24.188 3.063  -0.036 0.010  C3   BP5 7  
BP5 C2   C2   C 0 1 Y N N N N N -21.741 -5.425  24.415 3.726  -1.231 -0.257 C2   BP5 8  
BP5 C1   C1   C 0 1 Y N N N N N -21.198 -4.270  24.994 5.094  -1.210 -0.467 C1   BP5 9  
BP5 C12  C12  C 0 1 N N N N N N -22.247 -11.189 21.094 -2.584 -0.156 0.872  C12  BP5 10 
BP5 C11  C11  C 0 1 Y N N N N N -20.957 -9.892  22.868 -0.375 -1.234 0.375  C11  BP5 11 
BP5 N1   N1   N 0 1 Y N N N N N -19.643 -6.496  24.468 3.732  1.109  0.063  N1   BP5 12 
BP5 N2   N2   N 0 1 Y N N N N N -20.622 -8.828  23.624 0.928  -1.186 0.185  N2   BP5 13 
BP5 CA   C13  C 0 1 N N S Y N N -23.682 -11.581 20.843 -3.307 0.014  -0.465 C13  BP5 14 
BP5 C    C14  C 0 1 N N N Y N Y -23.677 -12.642 19.718 -4.788 -0.179 -0.263 C14  BP5 15 
BP5 OXT  O1   O 0 1 N Y N Y N Y -24.283 -13.737 19.928 -5.299 -1.418 -0.182 O1   BP5 16 
BP5 O    O2   O 0 1 N N N Y N Y -23.035 -12.353 18.685 -5.516 0.781  -0.174 O2   BP5 17 
BP5 N    N    N 0 1 N N N Y Y N -24.120 -12.153 22.130 -3.056 1.362  -0.990 N    BP5 18 
BP5 H8   H8   H 0 1 N N N N N N -23.589 -8.675  21.070 -0.975 2.044  0.923  H8   BP5 19 
BP5 H7   H7   H 0 1 N N N N N N -22.979 -6.668  22.464 1.480  2.085  0.546  H7   BP5 20 
BP5 H5   H5   H 0 1 N N N N N N -19.394 -3.416  25.782 6.821  0.059  -0.566 H5   BP5 21 
BP5 H4   H4   H 0 1 N N N N N N -18.041 -5.407  25.267 5.545  2.108  -0.082 H4   BP5 22 
BP5 H3   H2   H 0 1 N N N N N N -22.785 -5.442  24.140 3.180  -2.162 -0.299 H2   BP5 23 
BP5 H1   H1   H 0 1 N N N N N N -21.811 -3.401  25.183 5.635  -2.121 -0.676 H1   BP5 24 
BP5 H121 H121 H 0 0 N N N N N N -21.765 -11.037 20.117 -2.841 -1.123 1.305  H121 BP5 25 
BP5 H122 H122 H 0 0 N N N N N N -21.758 -12.024 21.618 -2.888 0.639  1.553  H122 BP5 26 
BP5 H11  H11  H 0 1 N N N N N N -20.378 -10.798 22.973 -0.886 -2.184 0.320  H11  BP5 27 
BP5 HA   H13  H 0 1 N N N Y N N -24.289 -10.710 20.555 -2.938 -0.727 -1.174 H13  BP5 28 
BP5 HXT  HO1  H 0 1 N Y N Y N Y -24.175 -14.308 19.177 -6.254 -1.491 -0.052 HO1  BP5 29 
BP5 H    HN1  H 0 1 N N N Y Y N -25.074 -12.445 22.058 -3.470 1.478  -1.903 HN1  BP5 30 
BP5 H2   HN2  H 0 1 N Y N Y Y N -23.547 -12.940 22.357 -3.390 2.068  -0.350 HN2  BP5 31 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
BP5 C9  C12  SING N N 1  
BP5 C9  C8   DOUB Y N 2  
BP5 C9  C11  SING Y N 3  
BP5 C8  C7   SING Y N 4  
BP5 C8  H8   SING N N 5  
BP5 C7  C6   DOUB Y N 6  
BP5 C7  H7   SING N N 7  
BP5 C6  N2   SING Y N 8  
BP5 C6  C3   SING N N 9  
BP5 C5  C1   DOUB Y N 10 
BP5 C5  C4   SING Y N 11 
BP5 C5  H5   SING N N 12 
BP5 C4  N1   DOUB Y N 13 
BP5 C4  H4   SING N N 14 
BP5 C3  C2   DOUB Y N 15 
BP5 C3  N1   SING Y N 16 
BP5 C2  C1   SING Y N 17 
BP5 C2  H3   SING N N 18 
BP5 C1  H1   SING N N 19 
BP5 C12 CA   SING N N 20 
BP5 C12 H121 SING N N 21 
BP5 C12 H122 SING N N 22 
BP5 C11 N2   DOUB Y N 23 
BP5 C11 H11  SING N N 24 
BP5 CA  C    SING N N 25 
BP5 CA  N    SING N N 26 
BP5 CA  HA   SING N N 27 
BP5 C   O    DOUB N N 28 
BP5 C   OXT  SING N N 29 
BP5 OXT HXT  SING N N 30 
BP5 N   H    SING N N 31 
BP5 N   H2   SING N N 32 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
BP5 SMILES           ACDLabs              12.01 "O=C(O)C(N)Cc2cnc(c1ncccc1)cc2"                                                                                 
BP5 InChI            InChI                1.03  "InChI=1S/C13H13N3O2/c14-10(13(17)18)7-9-4-5-12(16-8-9)11-3-1-2-6-15-11/h1-6,8,10H,7,14H2,(H,17,18)/t10-/m0/s1" 
BP5 InChIKey         InChI                1.03  VWTQURBMIRJISI-JTQLQIEISA-N                                                                                     
BP5 SMILES_CANONICAL CACTVS               3.370 "N[C@@H](Cc1ccc(nc1)c2ccccn2)C(O)=O"                                                                            
BP5 SMILES           CACTVS               3.370 "N[CH](Cc1ccc(nc1)c2ccccn2)C(O)=O"                                                                              
BP5 SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "c1ccnc(c1)c2ccc(cn2)C[C@@H](C(=O)O)N"                                                                          
BP5 SMILES           "OpenEye OEToolkits" 1.7.6 "c1ccnc(c1)c2ccc(cn2)CC(C(=O)O)N"                                                                               
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
BP5 "SYSTEMATIC NAME" ACDLabs              12.01 "3-(2,2'-bipyridin-5-yl)-L-alanine"                          
BP5 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 "(2S)-2-azanyl-3-(6-pyridin-2-ylpyridin-3-yl)propanoic acid" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
BP5 "Create component"         2007-05-23 RCSB 
BP5 "Modify aromatic_flag"     2011-06-04 RCSB 
BP5 "Modify descriptor"        2011-06-04 RCSB 
BP5 "Modify linking type"      2013-01-31 RCSB 
BP5 "Modify internal type"     2013-01-31 RCSB 
BP5 "Modify parent residue"    2013-01-31 RCSB 
BP5 "Modify leaving atom flag" 2013-01-31 RCSB 
BP5 "Modify backbone"          2023-11-03 PDBE 
BP5 "Modify PCM"               2024-09-27 PDBE 
# 
_pdbx_chem_comp_pcm.pcm_id                             1 
_pdbx_chem_comp_pcm.comp_id                            BP5 
_pdbx_chem_comp_pcm.modified_residue_id                ? 
_pdbx_chem_comp_pcm.type                               None 
_pdbx_chem_comp_pcm.category                           "Non-standard residue" 
_pdbx_chem_comp_pcm.position                           "Amino-acid side chain" 
_pdbx_chem_comp_pcm.polypeptide_position               "Any position" 
_pdbx_chem_comp_pcm.comp_id_linking_atom               ? 
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom   ? 
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession     ? 
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession      ? 
# 
