data_BD5
# 
_chem_comp.id                                    BD5 
_chem_comp.name                                  "N-[(benzyloxy)carbonyl]-D-tyrosyl-L-phenylalanyl-L-tyrosine" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C35 H35 N3 O8" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2009-06-22 
_chem_comp.pdbx_modified_date                    2011-06-04 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        625.668 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     BD5 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        3HXB 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
BD5 C43  C43  C 0 1 Y N N 5.844  18.880 27.391 -6.168 -2.178 -0.088 C43  BD5 1  
BD5 C42  C42  C 0 1 Y N N 5.350  20.185 27.365 -5.865 -3.418 -0.617 C42  BD5 2  
BD5 C41  C41  C 0 1 Y N N 3.985  20.419 27.206 -6.149 -3.692 -1.947 C41  BD5 3  
BD5 O44  O44  O 0 1 N N N 3.507  21.693 27.179 -5.852 -4.911 -2.469 O44  BD5 4  
BD5 C40  C40  C 0 1 Y N N 3.114  19.340 27.074 -6.737 -2.720 -2.742 C40  BD5 5  
BD5 C39  C39  C 0 1 Y N N 3.600  18.032 27.101 -7.039 -1.482 -2.209 C39  BD5 6  
BD5 C38  C38  C 0 1 Y N N 4.969  17.797 27.251 -6.754 -1.211 -0.883 C38  BD5 7  
BD5 C37  C37  C 0 1 N N N 5.497  16.353 27.292 -7.085 0.140  -0.304 C37  BD5 8  
BD5 C35  C35  C 0 1 N N S 5.882  15.693 25.936 -5.890 1.079  -0.485 C35  BD5 9  
BD5 C36  C36  C 0 1 N N N 4.903  14.558 25.546 -6.263 2.462  -0.018 C36  BD5 10 
BD5 O45  O45  O 0 1 N N N 4.393  14.637 24.586 -7.280 3.116  -0.600 O45  BD5 11 
BD5 O46  O46  O 0 1 N N N 4.777  13.611 26.351 -5.645 2.983  0.881  O46  BD5 12 
BD5 N33  N33  N 0 1 N N N 5.931  16.596 24.769 -4.757 0.586  0.302  N33  BD5 13 
BD5 C32  C32  C 0 1 N N N 7.050  16.851 24.099 -3.498 0.906  -0.056 C32  BD5 14 
BD5 O34  O34  O 0 1 N N N 8.147  16.368 24.378 -3.302 1.602  -1.030 O34  BD5 15 
BD5 C24  C24  C 0 1 N N S 6.834  17.759 22.868 -2.333 0.399  0.754  C24  BD5 16 
BD5 C25  C25  C 0 1 N N N 7.660  17.206 21.639 -2.450 0.910  2.192  C25  BD5 17 
BD5 C26  C26  C 0 1 Y N N 7.910  18.214 20.491 -1.354 0.304  3.031  C26  BD5 18 
BD5 C31  C31  C 0 1 Y N N 9.091  18.158 19.770 -0.136 0.948  3.146  C31  BD5 19 
BD5 C30  C30  C 0 1 Y N N 9.311  19.079 18.756 0.868  0.393  3.916  C30  BD5 20 
BD5 C29  C29  C 0 1 Y N N 8.384  20.059 18.433 0.655  -0.806 4.571  C29  BD5 21 
BD5 C28  C28  C 0 1 Y N N 7.199  20.125 19.136 -0.563 -1.449 4.456  C28  BD5 22 
BD5 C27  C27  C 0 1 Y N N 6.986  19.200 20.147 -1.569 -0.892 3.690  C27  BD5 23 
BD5 N22  N22  N 0 1 N N N 6.877  19.240 23.043 -1.081 0.881  0.165  N22  BD5 24 
BD5 C21  C21  C 0 1 N N N 5.817  19.918 23.532 0.064  0.199  0.363  C21  BD5 25 
BD5 O23  O23  O 0 1 N N N 4.765  19.378 23.900 0.059  -0.814 1.030  O23  BD5 26 
BD5 C12  C12  C 0 1 N N R 5.890  21.481 23.540 1.351  0.696  -0.243 C12  BD5 27 
BD5 C13  C13  C 0 1 N N N 5.822  22.245 24.914 1.658  2.097  0.289  C13  BD5 28 
BD5 C14  C14  C 0 1 Y N N 6.243  23.724 24.735 2.878  2.643  -0.409 C14  BD5 29 
BD5 C19  C19  C 0 1 Y N N 7.133  24.275 25.667 2.737  3.368  -1.578 C19  BD5 30 
BD5 C18  C18  C 0 1 Y N N 7.548  25.597 25.525 3.854  3.869  -2.219 C18  BD5 31 
BD5 C17  C17  C 0 1 Y N N 7.095  26.367 24.451 5.116  3.644  -1.690 C17  BD5 32 
BD5 O20  O20  O 0 1 N N N 7.525  27.635 24.346 6.215  4.136  -2.319 O20  BD5 33 
BD5 C16  C16  C 0 1 Y N N 6.227  25.835 23.499 5.254  2.917  -0.516 C16  BD5 34 
BD5 C15  C15  C 0 1 Y N N 5.801  24.510 23.647 4.134  2.422  0.124  C15  BD5 35 
BD5 N10  N10  N 0 1 N N N 6.820  22.039 22.472 2.443  -0.213 0.117  N10  BD5 36 
BD5 C9   C9   C 0 1 N N N 8.137  22.361 22.473 3.536  -0.296 -0.667 C9   BD5 37 
BD5 O11  O11  O 0 1 N N N 8.952  22.217 23.384 3.617  0.383  -1.671 O11  BD5 38 
BD5 O8   O8   O 0 1 N N N 8.606  22.866 21.284 4.539  -1.131 -0.336 O8   BD5 39 
BD5 C7   C7   C 0 1 N N N 8.588  24.282 21.043 5.686  -1.169 -1.226 C7   BD5 40 
BD5 C3   C3   C 0 1 Y N N 7.736  24.856 20.119 6.699  -2.152 -0.699 C3   BD5 41 
BD5 C2   C2   C 0 1 Y N N 6.738  24.074 19.518 6.644  -3.477 -1.089 C2   BD5 42 
BD5 C1   C1   C 0 1 Y N N 5.854  24.620 18.586 7.574  -4.379 -0.606 C1   BD5 43 
BD5 C6   C6   C 0 1 Y N N 5.986  25.971 18.273 8.558  -3.956 0.268  C6   BD5 44 
BD5 C5   C5   C 0 1 Y N N 6.985  26.749 18.880 8.613  -2.631 0.658  C5   BD5 45 
BD5 C4   C4   C 0 1 Y N N 7.880  26.212 19.810 7.686  -1.728 0.171  C4   BD5 46 
BD5 H43  H43  H 0 1 N N N 6.902  18.706 27.519 -5.951 -1.966 0.948  H43  BD5 47 
BD5 H42  H42  H 0 1 N N N 6.029  21.018 27.469 -5.406 -4.173 0.005  H42  BD5 48 
BD5 HO44 HO44 H 0 0 N N N 3.396  22.009 28.068 -6.566 -5.558 -2.389 HO44 BD5 49 
BD5 H40  H40  H 0 1 N N N 2.056  19.517 26.950 -6.959 -2.931 -3.778 H40  BD5 50 
BD5 H39  H39  H 0 1 N N N 2.917  17.201 27.006 -7.497 -0.724 -2.828 H39  BD5 51 
BD5 H37  H37  H 0 1 N N N 6.405  16.362 27.913 -7.953 0.553  -0.817 H37  BD5 52 
BD5 H37A H37A H 0 0 N N N 4.659  15.752 27.675 -7.306 0.036  0.758  H37A BD5 53 
BD5 H35  H35  H 0 1 N N N 6.899  15.329 26.142 -5.613 1.114  -1.539 H35  BD5 54 
BD5 HN33 HN33 H 0 0 N N N 5.084  17.035 24.469 -4.914 0.029  1.081  HN33 BD5 55 
BD5 H24  H24  H 0 1 N N N 5.758  17.673 22.655 -2.338 -0.691 0.755  H24  BD5 56 
BD5 H25  H25  H 0 1 N N N 8.642  16.887 22.018 -2.356 1.996  2.200  H25  BD5 57 
BD5 H25A H25A H 0 0 N N N 7.055  16.396 21.206 -3.420 0.626  2.600  H25A BD5 58 
BD5 H31  H31  H 0 1 N N N 9.833  17.406 19.995 0.030  1.885  2.635  H31  BD5 59 
BD5 H30  H30  H 0 1 N N N 10.235 19.031 18.199 1.820  0.895  4.006  H30  BD5 60 
BD5 H29  H29  H 0 1 N N N 8.588  20.763 17.640 1.441  -1.240 5.172  H29  BD5 61 
BD5 H28  H28  H 0 1 N N N 6.458  20.876 18.906 -0.729 -2.386 4.967  H28  BD5 62 
BD5 H27  H27  H 0 1 N N N 6.057  19.246 20.696 -2.522 -1.392 3.603  H27  BD5 63 
BD5 HN22 HN22 H 0 0 N N N 7.706  19.740 22.793 -1.077 1.691  -0.369 HN22 BD5 64 
BD5 H12  H12  H 0 1 N N N 4.878  21.766 23.217 1.252  0.732  -1.328 H12  BD5 65 
BD5 H13  H13  H 0 1 N N N 4.791  22.208 25.296 0.808  2.752  0.099  H13  BD5 66 
BD5 H13A H13A H 0 0 N N N 6.510  21.763 25.624 1.846  2.046  1.361  H13A BD5 67 
BD5 H19  H19  H 0 1 N N N 7.495  23.678 26.491 1.755  3.543  -1.990 H19  BD5 68 
BD5 H18  H18  H 0 1 N N N 8.223  26.029 26.249 3.744  4.435  -3.133 H18  BD5 69 
BD5 HO20 HO20 H 0 0 N N N 7.627  28.008 25.214 6.469  5.024  -2.031 HO20 BD5 70 
BD5 H16  H16  H 0 1 N N N 5.890  26.433 22.665 6.236  2.740  -0.102 H16  BD5 71 
BD5 H15  H15  H 0 1 N N N 5.126  24.083 22.920 4.241  1.860  1.040  H15  BD5 72 
BD5 HN10 HN10 H 0 0 N N N 6.369  22.200 21.594 2.378  -0.755 0.919  HN10 BD5 73 
BD5 H7   H7   H 0 1 N N N 8.328  24.741 22.008 5.364  -1.477 -2.221 H7   BD5 74 
BD5 H7A  H7A  H 0 1 N N N 9.578  24.462 20.600 6.136  -0.178 -1.281 H7A  BD5 75 
BD5 H2   H2   H 0 1 N N N 6.652  23.030 19.781 5.875  -3.808 -1.772 H2   BD5 76 
BD5 H1   H1   H 0 1 N N N 5.091  24.013 18.122 7.530  -5.414 -0.910 H1   BD5 77 
BD5 H6   H6   H 0 1 N N N 5.315  26.423 17.558 9.283  -4.661 0.646  H6   BD5 78 
BD5 H5   H5   H 0 1 N N N 7.064  27.794 18.620 9.382  -2.300 1.341  H5   BD5 79 
BD5 H4   H4   H 0 1 N N N 8.648  26.817 20.269 7.732  -0.692 0.472  H4   BD5 80 
BD5 H351 H351 H 0 0 N N N 3.839  13.876 24.457 -7.482 4.001  -0.266 H351 BD5 81 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
BD5 C43 C42  DOUB Y N 1  
BD5 C43 C38  SING Y N 2  
BD5 C43 H43  SING N N 3  
BD5 C42 C41  SING Y N 4  
BD5 C42 H42  SING N N 5  
BD5 C41 O44  SING N N 6  
BD5 C41 C40  DOUB Y N 7  
BD5 O44 HO44 SING N N 8  
BD5 C40 C39  SING Y N 9  
BD5 C40 H40  SING N N 10 
BD5 C39 C38  DOUB Y N 11 
BD5 C39 H39  SING N N 12 
BD5 C38 C37  SING N N 13 
BD5 C37 C35  SING N N 14 
BD5 C37 H37  SING N N 15 
BD5 C37 H37A SING N N 16 
BD5 C35 C36  SING N N 17 
BD5 C35 N33  SING N N 18 
BD5 C35 H35  SING N N 19 
BD5 C36 O45  SING N N 20 
BD5 C36 O46  DOUB N N 21 
BD5 N33 C32  SING N N 22 
BD5 N33 HN33 SING N N 23 
BD5 C32 O34  DOUB N N 24 
BD5 C32 C24  SING N N 25 
BD5 C24 C25  SING N N 26 
BD5 C24 N22  SING N N 27 
BD5 C24 H24  SING N N 28 
BD5 C25 C26  SING N N 29 
BD5 C25 H25  SING N N 30 
BD5 C25 H25A SING N N 31 
BD5 C26 C31  DOUB Y N 32 
BD5 C26 C27  SING Y N 33 
BD5 C31 C30  SING Y N 34 
BD5 C31 H31  SING N N 35 
BD5 C30 C29  DOUB Y N 36 
BD5 C30 H30  SING N N 37 
BD5 C29 C28  SING Y N 38 
BD5 C29 H29  SING N N 39 
BD5 C28 C27  DOUB Y N 40 
BD5 C28 H28  SING N N 41 
BD5 C27 H27  SING N N 42 
BD5 N22 C21  SING N N 43 
BD5 N22 HN22 SING N N 44 
BD5 C21 O23  DOUB N N 45 
BD5 C21 C12  SING N N 46 
BD5 C12 C13  SING N N 47 
BD5 C12 N10  SING N N 48 
BD5 C12 H12  SING N N 49 
BD5 C13 C14  SING N N 50 
BD5 C13 H13  SING N N 51 
BD5 C13 H13A SING N N 52 
BD5 C14 C19  DOUB Y N 53 
BD5 C14 C15  SING Y N 54 
BD5 C19 C18  SING Y N 55 
BD5 C19 H19  SING N N 56 
BD5 C18 C17  DOUB Y N 57 
BD5 C18 H18  SING N N 58 
BD5 C17 O20  SING N N 59 
BD5 C17 C16  SING Y N 60 
BD5 O20 HO20 SING N N 61 
BD5 C16 C15  DOUB Y N 62 
BD5 C16 H16  SING N N 63 
BD5 C15 H15  SING N N 64 
BD5 N10 C9   SING N N 65 
BD5 N10 HN10 SING N N 66 
BD5 C9  O11  DOUB N N 67 
BD5 C9  O8   SING N N 68 
BD5 O8  C7   SING N N 69 
BD5 C7  C3   SING N N 70 
BD5 C7  H7   SING N N 71 
BD5 C7  H7A  SING N N 72 
BD5 C3  C2   DOUB Y N 73 
BD5 C3  C4   SING Y N 74 
BD5 C2  C1   SING Y N 75 
BD5 C2  H2   SING N N 76 
BD5 C1  C6   DOUB Y N 77 
BD5 C1  H1   SING N N 78 
BD5 C6  C5   SING Y N 79 
BD5 C6  H6   SING N N 80 
BD5 C5  C4   DOUB Y N 81 
BD5 C5  H5   SING N N 82 
BD5 C4  H4   SING N N 83 
BD5 O45 H351 SING N N 84 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
BD5 SMILES           ACDLabs              10.04 "O=C(OCc1ccccc1)NC(C(=O)NC(C(=O)NC(C(=O)O)Cc2ccc(O)cc2)Cc3ccccc3)Cc4ccc(O)cc4" 
BD5 SMILES_CANONICAL CACTVS               3.341 "OC(=O)[C@H](Cc1ccc(O)cc1)NC(=O)[C@H](Cc2ccccc2)NC(=O)[C@@H](Cc3ccc(O)cc3)NC(=O)OCc4ccccc4" 
BD5 SMILES           CACTVS               3.341 "OC(=O)[CH](Cc1ccc(O)cc1)NC(=O)[CH](Cc2ccccc2)NC(=O)[CH](Cc3ccc(O)cc3)NC(=O)OCc4ccccc4" 
BD5 SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "c1ccc(cc1)C[C@@H](C(=O)N[C@@H](Cc2ccc(cc2)O)C(=O)O)NC(=O)[C@@H](Cc3ccc(cc3)O)NC(=O)OCc4ccccc4" 
BD5 SMILES           "OpenEye OEToolkits" 1.5.0 "c1ccc(cc1)CC(C(=O)NC(Cc2ccc(cc2)O)C(=O)O)NC(=O)C(Cc3ccc(cc3)O)NC(=O)OCc4ccccc4" 
BD5 InChI            InChI                1.03  
"InChI=1S/C35H35N3O8/c39-27-15-11-24(12-16-27)20-30(38-35(45)46-22-26-9-5-2-6-10-26)33(42)36-29(19-23-7-3-1-4-8-23)32(41)37-31(34(43)44)21-25-13-17-28(40)18-14-25/h1-18,29-31,39-40H,19-22H2,(H,36,42)(H,37,41)(H,38,45)(H,43,44)/t29-,30+,31-/m0/s1" 
BD5 InChIKey         InChI                1.03  NYJFXELTSYMIOY-YPKYBTACSA-N 
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
BD5 "SYSTEMATIC NAME" ACDLabs              10.04 "N-[(benzyloxy)carbonyl]-D-tyrosyl-L-phenylalanyl-L-tyrosine"                                                                                          
BD5 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "(2S)-3-(4-hydroxyphenyl)-2-[[(2S)-2-[[(2R)-3-(4-hydroxyphenyl)-2-phenylmethoxycarbonylamino-propanoyl]amino]-3-phenyl-propanoyl]amino]propanoic acid" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
BD5 "Create component"     2009-06-22 RCSB 
BD5 "Modify aromatic_flag" 2011-06-04 RCSB 
BD5 "Modify descriptor"    2011-06-04 RCSB 
# 
