data_AI5
#

_chem_comp.id                                   AI5
_chem_comp.name                                 "(2~{S})-4-[2-[(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]ethyl-[2-[(2~{R},3~{R},4~{R},5~{R})-2-(4-azanyl-2-oxidanylidene-pyrimidin-1-yl)-5-[bis(oxidanyl)phosphanyloxymethyl]-4-oxidanyl-oxolan-3-yl]oxyethyl]amino]-2-azanyl-butanoic acid"
_chem_comp.type                                 non-polymer
_chem_comp.pdbx_type                            ATOMN
_chem_comp.formula                              "C26 H39 N10 O12 P"
_chem_comp.mon_nstd_parent_comp_id              C
_chem_comp.pdbx_synonyms                        ?
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2021-11-08
_chem_comp.pdbx_modified_date                   2022-03-25
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       714.621
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    AI5
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       7S0S
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
AI5  C24    C1   C  0  1  N  N  R  118.450  212.092  129.675   -2.673   0.995   0.140  C24    AI5   1  
AI5  C22    C2   C  0  1  N  N  N  118.761  212.999  132.093   -1.132  -0.674  -0.900  C22    AI5   2  
AI5  C23    C3   C  0  1  N  N  N  117.909  212.122  131.117   -1.755  -0.198   0.413  C23    AI5   3  
AI5  C20    C4   C  0  1  N  N  N  120.765  211.621  131.565    0.545  -2.155  -1.826  C20    AI5   4  
AI5  C15    C5   C  0  1  N  N  N  126.951  209.410  133.943    2.317   0.985   2.118  C15    AI5   5  
AI5  C01    C6   C  0  1  N  N  R  123.450  208.375  132.708    6.022  -0.268  -0.496  C01    AI5   6  
AI5  C02    C7   C  0  1  N  N  N  123.823  207.023  132.827    7.044   0.517  -1.321  C02    AI5   7  
AI5  C08    C8   C  0  1  N  N  R  125.000  210.010  132.899    4.000   0.140   0.556  C08    AI5   8  
AI5  C17    C9   C  0  1  N  N  R  124.223  210.137  131.511    3.617  -0.262  -0.891  C17    AI5   9  
AI5  C19    C10  C  0  1  N  N  N  121.935  210.822  132.220    1.673  -1.133  -1.990  C19    AI5  10  
AI5  N09    N1   N  0  1  N  N  N  126.322  209.412  132.797    3.127   1.210   1.046  N09    AI5  11  
AI5  P      P1   P  0  1  N  N  N  125.989  205.389  132.747    9.343   1.839  -1.001  P      AI5  12  
AI5  "O3'"  O1   O  0  1  N  N  N  122.597  208.960  130.382    4.924  -2.284  -1.326  "O3'"  AI5  13  
AI5  O03    O2   O  0  1  N  N  N  125.165  206.836  132.377    8.094   0.976  -0.468  O03    AI5  14  
AI5  O05    O3   O  0  1  N  N  N  127.426  205.752  133.028    9.962   2.415   0.369  O05    AI5  15  
AI5  O06    O4   O  0  1  N  N  N  125.409  204.850  134.025   10.403   0.690  -1.389  O06    AI5  16  
AI5  O07    O5   O  0  1  N  N  N  124.245  209.277  133.671    5.358   0.612   0.426  O07    AI5  17  
AI5  C10    C11  C  0  1  N  N  N  126.914  208.894  131.716    3.129   2.408   0.435  C10    AI5  18  
AI5  N11    N2   N  0  1  N  N  N  128.135  208.363  131.751    2.346   3.398   0.859  N11    AI5  19  
AI5  C12    C12  C  0  1  N  N  N  128.800  208.344  132.892    1.541   3.226   1.900  C12    AI5  20  
AI5  N13    N3   N  0  1  N  N  N  130.106  207.806  133.085    0.737   4.256   2.330  N13    AI5  21  
AI5  C14    C13  C  0  1  N  N  N  128.201  208.874  133.986    1.515   1.982   2.562  C14    AI5  22  
AI5  O16    O6   O  0  1  N  N  N  126.373  208.880  130.657    3.860   2.592  -0.524  O16    AI5  23  
AI5  O18    O7   O  0  1  N  N  N  123.181  211.194  131.563    2.579  -1.244  -0.890  O18    AI5  24  
AI5  N21    N4   N  0  1  N  N  N  119.937  212.277  132.654   -0.250  -1.819  -0.638  N21    AI5  25  
AI5  O25    O8   O  0  1  N  N  N  118.052  211.012  129.113   -3.804   0.573  -0.641  O25    AI5  26  
AI5  C26    C14  C  0  1  N  N  R  117.943  211.359  127.550   -4.931   1.367  -0.213  C26    AI5  27  
AI5  N27    N5   N  0  1  Y  N  N  116.839  210.819  127.071   -6.191   0.701  -0.556  N27    AI5  28  
AI5  C28    C15  C  0  1  Y  N  N  116.657  210.330  125.818   -7.408   1.309  -0.732  C28    AI5  29  
AI5  N29    N6   N  0  1  Y  N  N  117.396  210.222  124.714   -7.850   2.561  -0.668  N29    AI5  30  
AI5  C30    C16  C  0  1  Y  N  N  116.924  209.676  123.592   -9.117   2.837  -0.895  C30    AI5  31  
AI5  N31    N7   N  0  1  Y  N  N  115.678  209.215  123.523  -10.003   1.905  -1.194  N31    AI5  32  
AI5  C32    C17  C  0  1  Y  N  N  114.878  209.278  124.562   -9.654   0.626  -1.282  C32    AI5  33  
AI5  N33    N8   N  0  1  N  N  N  113.511  208.771  124.485  -10.590  -0.344  -1.596  N33    AI5  34  
AI5  C34    C18  C  0  1  Y  N  N  115.366  209.851  125.769   -8.312   0.281  -1.048  C34    AI5  35  
AI5  N35    N9   N  0  1  Y  N  N  114.826  210.064  126.981   -7.613  -0.879  -1.048  N35    AI5  36  
AI5  C36    C19  C  0  1  Y  N  N  115.729  210.656  127.756   -6.367  -0.634  -0.766  C36    AI5  37  
AI5  C37    C20  C  0  1  N  N  R  117.918  212.881  127.470   -4.754   1.447   1.325  C37    AI5  38  
AI5  O38    O9   O  0  1  N  N  N  119.188  213.334  126.844   -5.398   2.609   1.852  O38    AI5  39  
AI5  C39    C21  C  0  1  N  N  S  117.796  213.292  128.750   -3.214   1.556   1.469  C39    AI5  40  
AI5  O40    O10  O  0  1  N  N  N  118.460  214.522  129.005   -2.822   2.920   1.637  O40    AI5  41  
AI5  C41    C22  C  0  1  N  N  N  119.542  211.274  133.640   -1.021  -2.981  -0.175  C41    AI5  42  
AI5  C42    C23  C  0  1  N  N  N  120.659  211.123  134.742   -0.072  -4.009   0.444  C42    AI5  43  
AI5  C43    C24  C  0  1  N  N  S  120.460  209.871  135.640   -0.857  -5.268   0.819  C43    AI5  44  
AI5  N44    N10  N  0  1  N  N  N  120.869  210.180  136.994   -1.818  -4.947   1.883  N44    AI5  45  
AI5  C45    C25  C  0  1  N  N  N  121.301  208.720  135.109    0.097  -6.328   1.307  C45    AI5  46  
AI5  O46    O11  O  0  1  N  N  N  120.806  207.916  134.266    0.199  -6.551   2.490  O46    AI5  47  
AI5  O47    O12  O  0  1  N  N  N  122.491  208.563  135.512    0.833  -7.024   0.426  O47    AI5  48  
AI5  C48    C26  C  0  1  N  N  R  123.799  208.936  131.317    4.942  -0.859  -1.424  C48    AI5  49  
AI5  H1     H1   H  0  1  N  N  N  119.543  212.216  129.684   -2.124   1.771  -0.394  H1     AI5  50  
AI5  H2     H2   H  0  1  N  N  N  119.121  213.882  131.545   -1.922  -0.974  -1.589  H2     AI5  51  
AI5  H3     H3   H  0  1  N  N  N  118.118  213.321  132.926   -0.553   0.137  -1.342  H3     AI5  52  
AI5  H4     H4   H  0  1  N  N  N  116.885  212.523  131.095   -0.965   0.102   1.102  H4     AI5  53  
AI5  H5     H5   H  0  1  N  N  N  117.891  211.092  131.502   -2.335  -1.008   0.855  H5     AI5  54  
AI5  H6     H6   H  0  1  N  N  N  121.175  212.394  130.899   -0.094  -2.135  -2.709  H6     AI5  55  
AI5  H7     H7   H  0  1  N  N  N  120.131  210.935  130.984    0.972  -3.151  -1.708  H7     AI5  56  
AI5  H8     H8   H  0  1  N  N  N  126.492  209.822  134.830    2.311   0.022   2.606  H8     AI5  57  
AI5  H9     H9   H  0  1  N  N  N  122.374  208.507  132.893    6.523  -1.068   0.049  H9     AI5  58  
AI5  H10    H10  H  0  1  N  N  N  123.147  206.405  132.218    7.460  -0.129  -2.094  H10    AI5  59  
AI5  H11    H11  H  0  1  N  N  N  123.748  206.718  133.881    6.554   1.372  -1.787  H11    AI5  60  
AI5  H12    H12  H  0  1  N  N  N  125.104  211.028  133.303    3.955  -0.724   1.219  H12    AI5  61  
AI5  H13    H13  H  0  1  N  N  N  124.966  210.423  130.752    3.322   0.612  -1.473  H13    AI5  62  
AI5  H14    H14  H  0  1  N  N  N  121.760  209.743  132.098    2.206  -1.326  -2.921  H14    AI5  63  
AI5  H15    H15  H  0  1  N  N  N  121.995  211.065  133.291    1.252  -0.128  -2.014  H15    AI5  64  
AI5  H16    H16  H  0  1  N  N  N  122.287  208.073  130.241    5.730  -2.711  -1.645  H16    AI5  65  
AI5  H17    H17  H  0  1  N  N  N  127.916  204.966  133.239   10.742   2.973   0.245  H17    AI5  66  
AI5  H18    H18  H  0  1  N  N  N  125.850  204.041  134.257   10.191   0.220  -2.207  H18    AI5  67  
AI5  H19    H19  H  0  1  N  N  N  130.597  207.398  132.316    0.757   5.111   1.872  H19    AI5  68  
AI5  H20    H20  H  0  1  N  N  N  130.531  207.837  133.990    0.149   4.127   3.091  H20    AI5  69  
AI5  H21    H21  H  0  1  N  N  N  128.735  208.871  134.925    0.861   1.824   3.408  H21    AI5  70  
AI5  H23    H23  H  0  1  N  N  N  118.847  210.983  127.049   -4.891   2.361  -0.657  H23    AI5  71  
AI5  H24    H24  H  0  1  N  N  N  117.564  209.607  122.725   -9.444   3.865  -0.834  H24    AI5  72  
AI5  H25    H25  H  0  1  N  N  N  113.341  208.407  123.569  -11.513  -0.093  -1.756  H25    AI5  73  
AI5  H26    H26  H  0  1  N  N  N  113.387  208.044  125.161  -10.323  -1.274  -1.657  H26    AI5  74  
AI5  H27    H27  H  0  1  N  N  N  115.576  210.955  128.782   -5.587  -1.379  -0.703  H27    AI5  75  
AI5  H28    H28  H  0  1  N  N  N  117.064  213.199  126.853   -5.129   0.544   1.807  H28    AI5  76  
AI5  H29    H29  H  0  1  N  N  N  119.192  214.282  126.785   -5.315   2.704   2.811  H29    AI5  77  
AI5  H30    H30  H  0  1  N  N  N  116.737  213.375  129.035   -2.866   0.954   2.309  H30    AI5  78  
AI5  H31    H31  H  0  1  N  N  N  118.342  214.763  129.916   -3.186   3.339   2.430  H31    AI5  79  
AI5  H32    H32  H  0  1  N  N  N  118.601  211.585  134.117   -1.748  -2.661   0.572  H32    AI5  80  
AI5  H33    H33  H  0  1  N  N  N  119.396  210.307  133.136   -1.542  -3.431  -1.020  H33    AI5  81  
AI5  H34    H34  H  0  1  N  N  N  121.636  211.045  134.243    0.705  -4.266  -0.275  H34    AI5  82  
AI5  H35    H35  H  0  1  N  N  N  120.645  212.018  135.381    0.387  -3.587   1.339  H35    AI5  83  
AI5  H36    H36  H  0  1  N  N  N  119.398  209.584  135.619   -1.393  -5.635  -0.056  H36    AI5  84  
AI5  H37    H37  H  0  1  N  N  N  120.741  209.375  137.573   -1.355  -4.519   2.671  H37    AI5  85  
AI5  H38    H38  H  0  1  N  N  N  121.833  210.444  136.999   -2.559  -4.357   1.535  H38    AI5  86  
AI5  H40    H40  H  0  1  N  N  N  122.871  207.802  135.089    1.374  -7.744   0.779  H40    AI5  87  
AI5  H41    H41  H  0  1  N  N  N  124.573  208.294  130.872    5.112  -0.551  -2.455  H41    AI5  88  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
AI5  N31    C30  DOUB  Y  N   1  
AI5  N31    C32  SING  Y  N   2  
AI5  C30    N29  SING  Y  N   3  
AI5  N33    C32  SING  N  N   4  
AI5  C32    C34  DOUB  Y  N   5  
AI5  N29    C28  DOUB  Y  N   6  
AI5  C34    C28  SING  Y  N   7  
AI5  C34    N35  SING  Y  N   8  
AI5  C28    N27  SING  Y  N   9  
AI5  O38    C37  SING  N  N  10  
AI5  N35    C36  DOUB  Y  N  11  
AI5  N27    C26  SING  N  N  12  
AI5  N27    C36  SING  Y  N  13  
AI5  C37    C26  SING  N  N  14  
AI5  C37    C39  SING  N  N  15  
AI5  C26    O25  SING  N  N  16  
AI5  C39    O40  SING  N  N  17  
AI5  C39    C24  SING  N  N  18  
AI5  O25    C24  SING  N  N  19  
AI5  C24    C23  SING  N  N  20  
AI5  "O3'"  C48  SING  N  N  21  
AI5  O16    C10  DOUB  N  N  22  
AI5  C23    C22  SING  N  N  23  
AI5  C48    C17  SING  N  N  24  
AI5  C48    C01  SING  N  N  25  
AI5  C17    O18  SING  N  N  26  
AI5  C17    C08  SING  N  N  27  
AI5  O18    C19  SING  N  N  28  
AI5  C20    C19  SING  N  N  29  
AI5  C20    N21  SING  N  N  30  
AI5  C10    N11  SING  N  N  31  
AI5  C10    N09  SING  N  N  32  
AI5  N11    C12  DOUB  N  N  33  
AI5  C22    N21  SING  N  N  34  
AI5  O03    P    SING  N  N  35  
AI5  O03    C02  SING  N  N  36  
AI5  N21    C41  SING  N  N  37  
AI5  C01    C02  SING  N  N  38  
AI5  C01    O07  SING  N  N  39  
AI5  P      O05  SING  N  N  40  
AI5  P      O06  SING  N  N  41  
AI5  N09    C08  SING  N  N  42  
AI5  N09    C15  SING  N  N  43  
AI5  C12    N13  SING  N  N  44  
AI5  C12    C14  SING  N  N  45  
AI5  C08    O07  SING  N  N  46  
AI5  C41    C42  SING  N  N  47  
AI5  C15    C14  DOUB  N  N  48  
AI5  O46    C45  DOUB  N  N  49  
AI5  C42    C43  SING  N  N  50  
AI5  C45    O47  SING  N  N  51  
AI5  C45    C43  SING  N  N  52  
AI5  C43    N44  SING  N  N  53  
AI5  C24    H1   SING  N  N  54  
AI5  C22    H2   SING  N  N  55  
AI5  C22    H3   SING  N  N  56  
AI5  C23    H4   SING  N  N  57  
AI5  C23    H5   SING  N  N  58  
AI5  C20    H6   SING  N  N  59  
AI5  C20    H7   SING  N  N  60  
AI5  C15    H8   SING  N  N  61  
AI5  C01    H9   SING  N  N  62  
AI5  C02    H10  SING  N  N  63  
AI5  C02    H11  SING  N  N  64  
AI5  C08    H12  SING  N  N  65  
AI5  C17    H13  SING  N  N  66  
AI5  C19    H14  SING  N  N  67  
AI5  C19    H15  SING  N  N  68  
AI5  "O3'"  H16  SING  N  N  69  
AI5  O05    H17  SING  N  N  70  
AI5  O06    H18  SING  N  N  71  
AI5  N13    H19  SING  N  N  72  
AI5  N13    H20  SING  N  N  73  
AI5  C14    H21  SING  N  N  74  
AI5  C26    H23  SING  N  N  75  
AI5  C30    H24  SING  N  N  76  
AI5  N33    H25  SING  N  N  77  
AI5  N33    H26  SING  N  N  78  
AI5  C36    H27  SING  N  N  79  
AI5  C37    H28  SING  N  N  80  
AI5  O38    H29  SING  N  N  81  
AI5  C39    H30  SING  N  N  82  
AI5  O40    H31  SING  N  N  83  
AI5  C41    H32  SING  N  N  84  
AI5  C41    H33  SING  N  N  85  
AI5  C42    H34  SING  N  N  86  
AI5  C42    H35  SING  N  N  87  
AI5  C43    H36  SING  N  N  88  
AI5  N44    H37  SING  N  N  89  
AI5  N44    H38  SING  N  N  90  
AI5  O47    H40  SING  N  N  91  
AI5  C48    H41  SING  N  N  92  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
AI5  InChI             InChI                 1.03   "InChI=1S/C26H39N10O12P/c27-12(25(40)41)1-4-34(5-2-13-17(37)19(39)23(47-13)36-11-32-16-21(29)30-10-31-22(16)36)7-8-45-20-18(38)14(9-46-49(43)44)48-24(20)35-6-3-15(28)33-26(35)42/h3,6,10-14,17-20,23-24,37-39,43-44H,1-2,4-5,7-9,27H2,(H,40,41)(H2,28,33,42)(H2,29,30,31)/t12-,13+,14+,17+,18+,19+,20+,23+,24+/m0/s1"  
AI5  InChIKey          InChI                 1.03   ULLGXHGXQOQQSZ-ZZLLETKTSA-N  
AI5  SMILES_CANONICAL  CACTVS                3.385  "N[C@@H](CCN(CCO[C@@H]1[C@H](O)[C@@H](COP(O)O)O[C@H]1N2C=CC(=NC2=O)N)CC[C@H]3O[C@H]([C@H](O)[C@@H]3O)n4cnc5c(N)ncnc45)C(O)=O"  
AI5  SMILES            CACTVS                3.385  "N[CH](CCN(CCO[CH]1[CH](O)[CH](COP(O)O)O[CH]1N2C=CC(=NC2=O)N)CC[CH]3O[CH]([CH](O)[CH]3O)n4cnc5c(N)ncnc45)C(O)=O"  
AI5  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.7  "c1nc(c2c(n1)n(cn2)[C@H]3[C@@H]([C@@H]([C@H](O3)CCN(CC[C@@H](C(=O)O)N)CCO[C@@H]4[C@@H]([C@H](O[C@H]4N5C=CC(=NC5=O)N)COP(O)O)O)O)O)N"  
AI5  SMILES            "OpenEye OEToolkits"  2.0.7  "c1nc(c2c(n1)n(cn2)C3C(C(C(O3)CCN(CCC(C(=O)O)N)CCOC4C(C(OC4N5C=CC(=NC5=O)N)COP(O)O)O)O)O)N"  
#
_pdbx_chem_comp_identifier.comp_id          AI5
_pdbx_chem_comp_identifier.type             "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program          "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version  2.0.7
_pdbx_chem_comp_identifier.identifier       "(2~{S})-4-[2-[(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]ethyl-[2-[(2~{R},3~{R},4~{R},5~{R})-2-(4-azanyl-2-oxidanylidene-pyrimidin-1-yl)-5-[bis(oxidanyl)phosphanyloxymethyl]-4-oxidanyl-oxolan-3-yl]oxyethyl]amino]-2-azanyl-butanoic acid"
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
AI5  "Create component"  2021-11-08  RCSB  
AI5  "Initial release"   2022-03-30  RCSB  
##
