data_9S5
#

_chem_comp.id                                   9S5
_chem_comp.name                                 "(8-oxa-2-azaspiro[4.5]decan-2-yl)(2-{[(1S)-1-(pyrazin-2-yl)ethyl]amino}pyrimidin-5-yl)methanone"
_chem_comp.type                                 non-polymer
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C19 H24 N6 O2"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        ?
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2021-10-26
_chem_comp.pdbx_modified_date                   2022-01-07
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       368.433
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    9S5
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       7SLY
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
9S5  N3   N1   N  0  1  N  N  N  17.459  -30.188  -29.723   3.375   0.611  -0.492  N3   9S5   1  
9S5  C4   C1   C  0  1  Y  N  N  20.605  -29.551  -31.500   6.250  -1.402   0.623  C4   9S5   2  
9S5  N2   N2   N  0  1  Y  N  N  18.650  -28.137  -31.340   6.095   0.600  -0.584  N2   9S5   3  
9S5  C7   C2   C  0  1  Y  N  N  17.984  -29.839  -28.502   2.038   0.766  -0.190  C7   9S5   4  
9S5  C6   C3   C  0  1  Y  N  N  19.458  -27.120  -31.717   7.389   0.790  -0.401  C6   9S5   5  
9S5  C9   C4   C  0  1  Y  N  N  18.967  -29.237  -26.041  -0.561   1.067   0.398  C9   9S5   6  
9S5  C13  C5   C  0  1  N  N  N  18.393  -27.522  -21.566  -3.670  -1.997   0.046  C13  9S5   7  
9S5  C8   C6   C  0  1  Y  N  N  19.814  -29.514  -27.130   0.187   2.133  -0.118  C8   9S5   8  
9S5  N5   N3   N  0  1  Y  N  N  17.062  -29.584  -27.487   1.365  -0.267   0.302  N5   9S5   9  
9S5  C18  C7   C  0  1  N  N  N  15.548  -25.391  -23.108  -6.077   0.663  -1.393  C18  9S5  10  
9S5  C16  C8   C  0  1  N  N  N  18.382  -25.321  -22.771  -6.097  -1.515   0.512  C16  9S5  11  
9S5  C19  C9   C  0  1  N  N  N  16.219  -26.392  -22.168  -4.936  -0.360  -1.388  C19  9S5  12  
9S5  C1   C10  C  0  1  N  N  N  17.504  -30.899  -32.064   3.799  -1.576  -1.502  C1   9S5  13  
9S5  C2   C11  C  0  1  N  N  S  18.346  -30.516  -30.846   4.028  -0.683  -0.281  C2   9S5  14  
9S5  C3   C12  C  0  1  Y  N  N  19.234  -29.354  -31.230   5.507  -0.472  -0.083  C3   9S5  15  
9S5  N1   N4   N  0  1  Y  N  N  21.405  -28.535  -31.892   7.546  -1.214   0.801  N1   9S5  16  
9S5  C5   C13  C  0  1  Y  N  N  20.822  -27.319  -31.996   8.132  -0.140   0.305  C5   9S5  17  
9S5  N4   N5   N  0  1  Y  N  N  19.371  -29.815  -28.361   1.464   1.944  -0.394  N4   9S5  18  
9S5  C10  C14  C  0  1  Y  N  N  17.591  -29.305  -26.283   0.085  -0.159   0.604  C10  9S5  19  
9S5  C11  C15  C  0  1  N  N  N  19.580  -29.047  -24.722  -1.992   1.233   0.721  C11  9S5  20  
9S5  O1   O1   O  0  1  N  N  N  20.685  -29.525  -24.455  -2.436   2.339   0.962  O1   9S5  21  
9S5  N6   N6   N  0  1  N  N  N  18.884  -28.379  -23.725  -2.805   0.158   0.750  N6   9S5  22  
9S5  C12  C16  C  0  1  N  N  N  19.452  -28.284  -22.365  -2.419  -1.252   0.554  C12  9S5  23  
9S5  C14  C17  C  0  1  N  N  N  17.657  -26.656  -22.604  -4.781  -0.932   0.015  C14  9S5  24  
9S5  C15  C18  C  0  1  N  N  N  17.732  -27.486  -23.906  -4.272   0.153   0.985  C15  9S5  25  
9S5  C17  C19  C  0  1  N  N  N  17.581  -24.367  -23.661  -7.188  -0.442   0.426  C17  9S5  26  
9S5  O2   O2   O  0  1  N  N  N  16.278  -24.196  -23.169  -7.272   0.040  -0.917  O2   9S5  27  
9S5  H8   H1   H  0  1  N  N  N  16.890  -29.421  -30.021   3.881   1.357  -0.849  H8   9S5  28  
9S5  H5   H2   H  0  1  N  N  N  21.026  -30.540  -31.390   5.770  -2.278   1.033  H5   9S5  29  
9S5  H7   H3   H  0  1  N  N  N  19.044  -26.127  -31.806   7.870   1.666  -0.811  H7   9S5  30  
9S5  H13  H4   H  0  1  N  N  N  18.867  -26.889  -20.801  -3.495  -2.392  -0.954  H13  9S5  31  
9S5  H14  H5   H  0  1  N  N  N  17.696  -28.222  -21.082  -3.936  -2.802   0.731  H14  9S5  32  
9S5  H9   H6   H  0  1  N  N  N  20.881  -29.483  -26.966  -0.274   3.095  -0.287  H9   9S5  33  
9S5  H22  H7   H  0  1  N  N  N  14.534  -25.175  -22.740  -5.819   1.499  -0.742  H22  9S5  34  
9S5  H21  H8   H  0  1  N  N  N  15.487  -25.828  -24.116  -6.235   1.028  -2.408  H21  9S5  35  
9S5  H18  H9   H  0  1  N  N  N  19.365  -25.501  -23.231  -6.376  -2.367  -0.107  H18  9S5  36  
9S5  H17  H10  H  0  1  N  N  N  18.519  -24.860  -21.782  -5.985  -1.838   1.547  H17  9S5  37  
9S5  H23  H11  H  0  1  N  N  N  16.220  -25.984  -21.146  -5.166  -1.165  -2.087  H23  9S5  38  
9S5  H24  H12  H  0  1  N  N  N  15.657  -27.337  -22.185  -4.008   0.128  -1.687  H24  9S5  39  
9S5  H2   H13  H  0  1  N  N  N  16.849  -31.744  -31.806   4.286  -2.539  -1.344  H2   9S5  40  
9S5  H3   H14  H  0  1  N  N  N  16.890  -30.039  -32.370   2.730  -1.729  -1.645  H3   9S5  41  
9S5  H4   H15  H  0  1  N  N  N  18.168  -31.189  -32.892   4.220  -1.097  -2.386  H4   9S5  42  
9S5  H1   H16  H  0  1  N  N  N  18.980  -31.373  -30.574   3.608  -1.162   0.604  H1   9S5  43  
9S5  H6   H17  H  0  1  N  N  N  21.422  -26.475  -32.303   9.192   0.013   0.450  H6   9S5  44  
9S5  H10  H18  H  0  1  N  N  N  16.917  -29.124  -25.458  -0.457  -1.003   1.004  H10  9S5  45  
9S5  H11  H19  H  0  1  N  N  N  19.615  -29.285  -21.940  -2.090  -1.682   1.501  H11  9S5  46  
9S5  H12  H20  H  0  1  N  N  N  20.403  -27.732  -22.378  -1.621  -1.320  -0.185  H12  9S5  47  
9S5  H16  H21  H  0  1  N  N  N  17.886  -26.829  -24.775  -4.495  -0.119   2.017  H16  9S5  48  
9S5  H15  H22  H  0  1  N  N  N  16.810  -28.069  -24.046  -4.704   1.123   0.740  H15  9S5  49  
9S5  H19  H23  H  0  1  N  N  N  17.530  -24.782  -24.679  -8.146  -0.872   0.718  H19  9S5  50  
9S5  H20  H24  H  0  1  N  N  N  18.086  -23.390  -23.688  -6.941   0.383   1.094  H20  9S5  51  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
9S5  C1   C2   SING  N  N   1  
9S5  C5   N1   DOUB  Y  N   2  
9S5  C5   C6   SING  Y  N   3  
9S5  N1   C4   SING  Y  N   4  
9S5  C6   N2   DOUB  Y  N   5  
9S5  C4   C3   DOUB  Y  N   6  
9S5  N2   C3   SING  Y  N   7  
9S5  C3   C2   SING  N  N   8  
9S5  C2   N3   SING  N  N   9  
9S5  N3   C7   SING  N  N  10  
9S5  C7   N4   DOUB  Y  N  11  
9S5  C7   N5   SING  Y  N  12  
9S5  N4   C8   SING  Y  N  13  
9S5  N5   C10  DOUB  Y  N  14  
9S5  C8   C9   DOUB  Y  N  15  
9S5  C10  C9   SING  Y  N  16  
9S5  C9   C11  SING  N  N  17  
9S5  C11  O1   DOUB  N  N  18  
9S5  C11  N6   SING  N  N  19  
9S5  C15  N6   SING  N  N  20  
9S5  C15  C14  SING  N  N  21  
9S5  N6   C12  SING  N  N  22  
9S5  C17  O2   SING  N  N  23  
9S5  C17  C16  SING  N  N  24  
9S5  O2   C18  SING  N  N  25  
9S5  C18  C19  SING  N  N  26  
9S5  C16  C14  SING  N  N  27  
9S5  C14  C19  SING  N  N  28  
9S5  C14  C13  SING  N  N  29  
9S5  C12  C13  SING  N  N  30  
9S5  N3   H8   SING  N  N  31  
9S5  C4   H5   SING  N  N  32  
9S5  C6   H7   SING  N  N  33  
9S5  C13  H13  SING  N  N  34  
9S5  C13  H14  SING  N  N  35  
9S5  C8   H9   SING  N  N  36  
9S5  C18  H22  SING  N  N  37  
9S5  C18  H21  SING  N  N  38  
9S5  C16  H18  SING  N  N  39  
9S5  C16  H17  SING  N  N  40  
9S5  C19  H23  SING  N  N  41  
9S5  C19  H24  SING  N  N  42  
9S5  C1   H2   SING  N  N  43  
9S5  C1   H3   SING  N  N  44  
9S5  C1   H4   SING  N  N  45  
9S5  C2   H1   SING  N  N  46  
9S5  C5   H6   SING  N  N  47  
9S5  C10  H10  SING  N  N  48  
9S5  C12  H11  SING  N  N  49  
9S5  C12  H12  SING  N  N  50  
9S5  C15  H16  SING  N  N  51  
9S5  C15  H15  SING  N  N  52  
9S5  C17  H19  SING  N  N  53  
9S5  C17  H20  SING  N  N  54  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
9S5  SMILES            ACDLabs               12.01  "CC(Nc1ncc(cn1)C(=O)N1CCC2(C1)CCOCC2)c1cnccn1"  
9S5  InChI             InChI                 1.03   "InChI=1S/C19H24N6O2/c1-14(16-12-20-5-6-21-16)24-18-22-10-15(11-23-18)17(26)25-7-2-19(13-25)3-8-27-9-4-19/h5-6,10-12,14H,2-4,7-9,13H2,1H3,(H,22,23,24)/t14-/m0/s1"  
9S5  InChIKey          InChI                 1.03   RZEQDKIIEMKNMN-AWEZNQCLSA-N  
9S5  SMILES_CANONICAL  CACTVS                3.385  "C[C@H](Nc1ncc(cn1)C(=O)N2CCC3(CCOCC3)C2)c4cnccn4"  
9S5  SMILES            CACTVS                3.385  "C[CH](Nc1ncc(cn1)C(=O)N2CCC3(CCOCC3)C2)c4cnccn4"  
9S5  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.7  "C[C@@H](c1cnccn1)Nc2ncc(cn2)C(=O)N3CCC4(C3)CCOCC4"  
9S5  SMILES            "OpenEye OEToolkits"  2.0.7  "CC(c1cnccn1)Nc2ncc(cn2)C(=O)N3CCC4(C3)CCOCC4"  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
9S5  "SYSTEMATIC NAME"  ACDLabs               12.01  "(8-oxa-2-azaspiro[4.5]decan-2-yl)(2-{[(1S)-1-(pyrazin-2-yl)ethyl]amino}pyrimidin-5-yl)methanone"  
9S5  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  2.0.7  "8-oxa-2-azaspiro[4.5]decan-2-yl-[2-[[(1~{S})-1-pyrazin-2-ylethyl]amino]pyrimidin-5-yl]methanone"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
9S5  "Create component"  2021-10-26  RCSB  
9S5  "Initial release"   2022-01-12  RCSB  
##
