data_9K5
# 
_chem_comp.id                                    9K5 
_chem_comp.name                                  "[(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methyl 3-fluorosulfonylbenzoate" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C17 H16 F N5 O7 S" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2017-05-28 
_chem_comp.pdbx_modified_date                    2024-09-27 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        453.402 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     9K5 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        5O49 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  EBI 
_chem_comp.pdbx_pcm                              Y 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
9K5 C1  C1  C 0 1 Y N N N N N 86.267 6.928  14.464 -3.068 -0.575 1.486  C1  9K5 1  
9K5 C2  C2  C 0 1 Y N N N N N 86.824 8.078  13.893 -3.399 0.140  0.333  C2  9K5 2  
9K5 C3  C3  C 0 1 Y N N N N N 87.546 8.969  14.683 -4.687 0.040  -0.197 C3  9K5 3  
9K5 O4  O1  O 0 1 N N N N N N 86.200 5.503  9.448  1.738  0.628  0.128  O4  9K5 4  
9K5 O5  O2  O 0 1 N N N N N N 83.530 3.584  10.882 4.426  2.920  0.382  O5  9K5 5  
9K5 C7  C4  C 0 1 N N N N N N 85.730 7.733  10.204 -0.212 1.957  -0.503 C7  9K5 6  
9K5 C8  C5  C 0 1 N N R N N N 85.172 6.505  9.507  1.135  1.937  0.224  C8  9K5 7  
9K5 C9  C6  C 0 1 N N S N N N 83.971 5.902  10.242 2.136  2.885  -0.474 C9  9K5 8  
9K5 C10 C7  C 0 1 N N R N N N 84.512 4.625  10.838 3.489  2.145  -0.368 C10 9K5 9  
9K5 C11 C8  C 0 1 N N R N N N 85.663 4.263  9.914  3.145  0.838  0.380  C11 9K5 10 
9K5 C12 C9  C 0 1 Y N N N N N 87.329 3.755  11.753 3.555  -1.122 -1.156 C12 9K5 11 
9K5 C13 C10 C 0 1 Y N N N N N 88.143 1.876  10.994 5.531  -1.764 -0.536 C13 9K5 12 
9K5 C14 C11 C 0 1 Y N N N N N 87.217 2.341  10.080 5.180  -0.662 0.262  C14 9K5 13 
9K5 C15 C12 C 0 1 Y N N N N N 87.668 0.519  8.676  7.198  -0.828 1.349  C15 9K5 14 
9K5 C16 C13 C 0 1 Y N N N N N 88.794 0.682  10.723 6.782  -2.367 -0.321 C16 9K5 15 
9K5 O2  O3  O 0 1 N N N N N N 87.172 9.389  11.950 -2.682 1.621  -1.324 O2  9K5 16 
9K5 C6  C14 C 0 1 N N N N N N 86.658 8.375  12.436 -2.391 1.000  -0.321 C6  9K5 17 
9K5 C4  C15 C 0 1 Y N N N N N 87.712 8.715  16.040 -5.622 -0.763 0.420  C4  9K5 18 
9K5 S   S1  S 0 1 N N N N N N 88.626 9.875  16.961 -7.248 -0.891 -0.248 S   9K5 19 
9K5 O1  O4  O 0 1 N N N N N N 88.801 9.448  18.325 -7.219 -1.974 -1.168 O1  9K5 20 
9K5 O   O5  O 0 1 N N N N N N 87.988 11.163 16.917 -8.141 -0.833 0.855  O   9K5 21 
9K5 C5  C16 C 0 1 Y N N N N N 87.163 7.569  16.623 -5.288 -1.470 1.562  C5  9K5 22 
9K5 C   C17 C 0 1 Y N N N N N 86.438 6.673  15.830 -4.014 -1.375 2.092  C   9K5 23 
9K5 O3  O6  O 0 1 N N N N N N 85.917 7.463  11.587 -1.150 1.094  0.193  O3  9K5 24 
9K5 O6  O7  O 0 1 N N N N N N 82.979 5.573  9.253  2.197  4.139  0.209  O6  9K5 25 
9K5 N   N1  N 0 1 Y N N N N N 86.715 3.473  10.581 3.930  -0.277 -0.154 N   9K5 26 
9K5 N2  N2  N 0 1 Y N N N N N 87.001 1.657  8.925  6.037  -0.231 1.181  N2  9K5 27 
9K5 N3  N3  N 0 1 Y N N N N N 88.550 0.027  9.564  7.576  -1.862 0.618  N3  9K5 28 
9K5 N4  N4  N 0 1 N N N N N N 89.722 0.170  11.686 7.179  -3.461 -1.070 N4  9K5 29 
9K5 N1  N5  N 0 1 Y N N N N N 88.213 2.768  12.011 4.494  -1.995 -1.376 N1  9K5 30 
9K5 H1  H1  H 0 1 N N N N N N 85.706 6.238  13.851 -2.072 -0.506 1.899  H1  9K5 31 
9K5 H2  H2  H 0 1 N N N N N N 87.976 9.856  14.242 -4.949 0.591  -1.088 H2  9K5 32 
9K5 H3  H3  H 0 1 N N N N N N 82.825 3.838  11.466 4.631  3.779  -0.012 H3  9K5 33 
9K5 H4  H4  H 0 1 N N N N N N 86.696 8.002  9.751  -0.600 2.976  -0.521 H4  9K5 34 
9K5 H5  H5  H 0 1 N N N N N N 85.025 8.570  10.088 -0.079 1.601  -1.524 H5  9K5 35 
9K5 H6  H6  H 0 1 N N N N N N 84.860 6.784  8.490  1.006  2.220  1.268  H6  9K5 36 
9K5 H7  H7  H 0 1 N N N N N N 83.591 6.584  11.017 1.860  3.030  -1.518 H7  9K5 37 
9K5 H8  H8  H 0 1 N N N N N N 84.904 4.828  11.845 3.883  1.927  -1.361 H8  9K5 38 
9K5 H9  H9  H 0 1 N N N N N N 85.263 3.688  9.066  3.326  0.952  1.449  H9  9K5 39 
9K5 H10 H10 H 0 1 N N N N N N 87.144 4.619  12.374 2.614  -1.076 -1.685 H10 9K5 40 
9K5 H11 H11 H 0 1 N N N N N N 87.494 -0.009 7.750  7.872  -0.453 2.105  H11 9K5 41 
9K5 H14 H14 H 0 1 N N N N N N 87.298 7.377  17.677 -6.024 -2.098 2.040  H14 9K5 42 
9K5 H15 H15 H 0 1 N N N N N N 86.010 5.785  16.271 -3.757 -1.933 2.981  H15 9K5 43 
9K5 H16 H16 H 0 1 N N N N N N 82.219 5.195  9.680  2.810  4.773  -0.187 H16 9K5 44 
9K5 H17 H17 H 0 1 N N N N N N 90.111 -0.688 11.351 6.591  -3.820 -1.752 H17 9K5 45 
9K5 H18 H18 H 0 1 N N N N N N 90.455 0.835  11.828 8.045  -3.868 -0.912 H18 9K5 46 
9K5 F1  F1  F 0 1 N Y N N N N 90.101 10.027 16.167 -7.512 0.438  -1.118 F1  9K5 47 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
9K5 C15 N2  DOUB Y N 1  
9K5 C15 N3  SING Y N 2  
9K5 N2  C14 SING Y N 3  
9K5 O6  C9  SING N N 4  
9K5 O4  C8  SING N N 5  
9K5 O4  C11 SING N N 6  
9K5 C8  C7  SING N N 7  
9K5 C8  C9  SING N N 8  
9K5 N3  C16 DOUB Y N 9  
9K5 C11 N   SING N N 10 
9K5 C11 C10 SING N N 11 
9K5 C14 N   SING Y N 12 
9K5 C14 C13 DOUB Y N 13 
9K5 C7  O3  SING N N 14 
9K5 C9  C10 SING N N 15 
9K5 N   C12 SING Y N 16 
9K5 C16 C13 SING Y N 17 
9K5 C16 N4  SING N N 18 
9K5 C10 O5  SING N N 19 
9K5 C13 N1  SING Y N 20 
9K5 O3  C6  SING N N 21 
9K5 C12 N1  DOUB Y N 22 
9K5 O2  C6  DOUB N N 23 
9K5 C6  C2  SING N N 24 
9K5 C2  C1  DOUB Y N 25 
9K5 C2  C3  SING Y N 26 
9K5 C1  C   SING Y N 27 
9K5 C3  C4  DOUB Y N 28 
9K5 C   C5  DOUB Y N 29 
9K5 C4  C5  SING Y N 30 
9K5 C4  S   SING N N 31 
9K5 O   S   DOUB N N 32 
9K5 S   O1  DOUB N N 33 
9K5 C1  H1  SING N N 34 
9K5 C3  H2  SING N N 35 
9K5 O5  H3  SING N N 36 
9K5 C7  H4  SING N N 37 
9K5 C7  H5  SING N N 38 
9K5 C8  H6  SING N N 39 
9K5 C9  H7  SING N N 40 
9K5 C10 H8  SING N N 41 
9K5 C11 H9  SING N N 42 
9K5 C12 H10 SING N N 43 
9K5 C15 H11 SING N N 44 
9K5 C5  H14 SING N N 45 
9K5 C   H15 SING N N 46 
9K5 O6  H16 SING N N 47 
9K5 N4  H17 SING N N 48 
9K5 N4  H18 SING N N 49 
9K5 S   F1  SING N N 50 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
9K5 InChI            InChI                1.03  "InChI=1S/C17H16FN5O7S/c18-31(27,28)9-3-1-2-8(4-9)17(26)29-5-10-12(24)13(25)16(30-10)23-7-22-11-14(19)20-6-21-15(11)23/h1-4,6-7,10,12-13,16,24-25H,5H2,(H2,19,20,21)/t10-,12-,13-,16-/m1/s1" 
9K5 InChIKey         InChI                1.03  OZYWTUCVPSLDJN-XNIJJKJLSA-N                                                                                                                                                                  
9K5 SMILES_CANONICAL CACTVS               3.385 "Nc1ncnc2n(cnc12)[C@@H]3O[C@H](COC(=O)c4cccc(c4)[S](F)(=O)=O)[C@@H](O)[C@H]3O"                                                                                                               
9K5 SMILES           CACTVS               3.385 "Nc1ncnc2n(cnc12)[CH]3O[CH](COC(=O)c4cccc(c4)[S](F)(=O)=O)[CH](O)[CH]3O"                                                                                                                     
9K5 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.6 "c1cc(cc(c1)S(=O)(=O)F)C(=O)OC[C@@H]2[C@H]([C@H]([C@@H](O2)n3cnc4c3ncnc4N)O)O"                                                                                                               
9K5 SMILES           "OpenEye OEToolkits" 2.0.6 "c1cc(cc(c1)S(=O)(=O)F)C(=O)OCC2C(C(C(O2)n3cnc4c3ncnc4N)O)O"                                                                                                                                 
# 
_pdbx_chem_comp_identifier.comp_id           9K5 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   2.0.6 
_pdbx_chem_comp_identifier.identifier        "[(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methyl 3-fluorosulfonylbenzoate" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
9K5 "Create component" 2017-05-28 EBI  
9K5 "Initial release"  2018-02-07 RCSB 
9K5 "Modify PCM"       2024-09-27 PDBE 
# 
_pdbx_chem_comp_pcm.pcm_id                             1 
_pdbx_chem_comp_pcm.comp_id                            9K5 
_pdbx_chem_comp_pcm.modified_residue_id                LYS 
_pdbx_chem_comp_pcm.type                               None 
_pdbx_chem_comp_pcm.category                           "Covalent chemical modification" 
_pdbx_chem_comp_pcm.position                           "Amino-acid side chain" 
_pdbx_chem_comp_pcm.polypeptide_position               "Any position" 
_pdbx_chem_comp_pcm.comp_id_linking_atom               S 
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom   NZ 
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession     ? 
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession      ? 
# 
