data_8X5
# 
_chem_comp.id                                    8X5 
_chem_comp.name                                  "2-[2-(oxan-4-ylamino)pyrimidin-4-yl]-5-(phenylmethyl)-6,7-dihydro-1~{H}-pyrrolo[3,2-c]pyridin-4-one" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C23 H25 N5 O2" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2017-03-21 
_chem_comp.pdbx_modified_date                    2017-04-14 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        403.477 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     8X5 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        5NHF 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  EBI 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
8X5 C1  C1  C 0 1 Y N N -9.836  16.917 36.149 -7.736 -0.336 1.343  C1  8X5 1  
8X5 C2  C2  C 0 1 Y N N -10.010 16.695 37.507 -7.074 0.019  0.183  C2  8X5 2  
8X5 C3  C3  C 0 1 Y N N -9.000  16.119 38.269 -6.136 -0.835 -0.367 C3  8X5 3  
8X5 C7  C4  C 0 1 N N N -10.977 16.335 41.369 -4.254 1.731  -1.162 C7  8X5 4  
8X5 C8  C5  C 0 1 N N N -12.475 16.609 41.407 -3.403 2.264  -0.008 C8  8X5 5  
8X5 C9  C6  C 0 1 Y N N -13.102 15.297 41.070 -2.047 1.609  -0.063 C9  8X5 6  
8X5 C10 C7  C 0 1 Y N N -12.511 14.296 40.319 -1.888 0.332  -0.593 C10 8X5 7  
8X5 C11 C8  C 0 1 Y N N -13.457 13.233 40.219 -0.529 0.008  -0.507 C11 8X5 8  
8X5 C12 C9  C 0 1 Y N N -14.582 13.648 40.904 0.095  1.078  0.066  C12 8X5 9  
8X5 C13 C10 C 0 1 Y N N -15.859 12.950 41.112 1.540  1.181  0.353  C13 8X5 10 
8X5 C14 C11 C 0 1 Y N N -16.102 11.680 40.605 2.065  2.334  0.951  C14 8X5 11 
8X5 C15 C12 C 0 1 Y N N -17.330 11.122 40.905 3.423  2.384  1.202  C15 8X5 12 
8X5 C16 C13 C 0 1 Y N N -17.945 12.990 42.048 3.659  0.270  0.311  C16 8X5 13 
8X5 C19 C14 C 0 1 N N N -17.657 16.098 45.404 8.139  0.005  -0.637 C19 8X5 14 
8X5 C20 C15 C 0 1 N N N -19.757 16.826 44.629 8.011  -2.029 0.628  C20 8X5 15 
8X5 C21 C16 C 0 1 N N N -20.004 15.550 43.857 6.497  -2.121 0.417  C21 8X5 16 
8X5 C22 C17 C 0 1 N N N -11.154 14.436 39.807 -3.046 -0.418 -1.111 C22 8X5 17 
8X5 O1  O1  O 0 1 N N N -10.582 13.551 39.174 -2.977 -1.606 -1.362 O1  8X5 18 
8X5 N   N1  N 0 1 N N N -10.571 15.612 40.153 -4.190 0.282  -1.292 N   8X5 19 
8X5 C6  C18 C 0 1 N N N -9.184  15.868 39.747 -5.414 -0.448 -1.632 C6  8X5 20 
8X5 C4  C19 C 0 1 Y N N -7.800  15.799 37.644 -5.860 -2.044 0.244  C4  8X5 21 
8X5 C5  C20 C 0 1 Y N N -7.621  16.037 36.288 -6.523 -2.399 1.404  C5  8X5 22 
8X5 C   C21 C 0 1 Y N N -8.640  16.591 35.541 -7.457 -1.543 1.956  C   8X5 23 
8X5 N1  N2  N 0 1 Y N N -14.363 14.906 41.416 -0.850 2.046  0.331  N1  8X5 24 
8X5 N3  N3  N 0 1 Y N N -16.769 13.616 41.840 2.364  0.177  0.053  N3  8X5 25 
8X5 N2  N4  N 0 1 Y N N -18.282 11.762 41.605 4.182  1.350  0.871  N2  8X5 26 
8X5 N4  N5  N 0 1 N N N -18.864 13.642 42.789 4.488  -0.791 -0.013 N4  8X5 27 
8X5 C17 C22 C 0 1 N N N -18.673 14.928 43.462 5.924  -0.709 0.264  C17 8X5 28 
8X5 O   O2  O 0 1 N N N -18.947 16.585 45.788 8.603  -1.337 -0.474 O   8X5 29 
8X5 C18 C23 C 0 1 N N N -17.767 14.777 44.680 6.631  -0.006 -0.899 C18 8X5 30 
8X5 H1  H1  H 0 1 N N N -10.638 17.346 35.566 -8.469 0.331  1.772  H1  8X5 31 
8X5 H2  H2  H 0 1 N N N -10.941 16.973 37.978 -7.289 0.964  -0.294 H2  8X5 32 
8X5 H3  H3  H 0 1 N N N -10.706 15.730 42.247 -5.292 2.023  -0.997 H3  8X5 33 
8X5 H4  H4  H 0 1 N N N -10.441 17.295 41.405 -3.907 2.181  -2.092 H4  8X5 34 
8X5 H5  H5  H 0 1 N N N -12.750 17.373 40.665 -3.292 3.344  -0.105 H5  8X5 35 
8X5 H6  H6  H 0 1 N N N -12.784 16.942 42.409 -3.886 2.030  0.940  H6  8X5 36 
8X5 H7  H7  H 0 1 N N N -13.321 12.291 39.709 -0.064 -0.912 -0.831 H7  8X5 37 
8X5 H8  H8  H 0 1 N N N -15.370 11.156 40.008 1.424  3.163  1.211  H8  8X5 38 
8X5 H9  H9  H 0 1 N N N -17.535 10.120 40.559 3.861  3.258  1.661  H9  8X5 39 
8X5 H10 H10 H 0 1 N N N -17.041 15.963 46.305 8.347  0.574  0.269  H10 8X5 40 
8X5 H11 H11 H 0 1 N N N -17.179 16.833 44.740 8.652  0.466  -1.482 H11 8X5 41 
8X5 H12 H12 H 0 1 N N N -19.243 17.546 43.976 8.217  -1.486 1.551  H12 8X5 42 
8X5 H13 H13 H 0 1 N N N -20.723 17.245 44.948 8.431  -3.032 0.695  H13 8X5 43 
8X5 H14 H14 H 0 1 N N N -20.586 15.777 42.951 6.290  -2.698 -0.484 H14 8X5 44 
8X5 H15 H15 H 0 1 N N N -20.566 14.844 44.486 6.039  -2.610 1.277  H15 8X5 45 
8X5 H16 H16 H 0 1 N N N -8.578  14.993 40.025 -5.157 -1.346 -2.193 H16 8X5 46 
8X5 H17 H17 H 0 1 N N N -8.824  16.752 40.293 -6.060 0.188  -2.238 H17 8X5 47 
8X5 H18 H18 H 0 1 N N N -6.998  15.360 38.220 -5.127 -2.711 -0.185 H18 8X5 48 
8X5 H19 H19 H 0 1 N N N -6.682  15.788 35.817 -6.307 -3.344 1.881  H19 8X5 49 
8X5 H20 H20 H 0 1 N N N -8.503  16.769 34.485 -7.975 -1.821 2.863  H20 8X5 50 
8X5 H21 H21 H 0 1 N N N -15.016 15.442 41.950 -0.673 2.908  0.738  H21 8X5 51 
8X5 H22 H22 H 0 1 N N N -19.644 13.779 42.178 4.118  -1.588 -0.424 H22 8X5 52 
8X5 H23 H23 H 0 1 N N N -18.177 15.616 42.761 6.086  -0.148 1.184  H23 8X5 53 
8X5 H24 H24 H 0 1 N N N -18.191 14.023 45.359 6.268  1.019  -0.980 H24 8X5 54 
8X5 H25 H25 H 0 1 N N N -16.767 14.455 44.353 6.426  -0.540 -1.826 H25 8X5 55 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
8X5 C   C1  DOUB Y N 1  
8X5 C   C5  SING Y N 2  
8X5 C1  C2  SING Y N 3  
8X5 C5  C4  DOUB Y N 4  
8X5 C2  C3  DOUB Y N 5  
8X5 C4  C3  SING Y N 6  
8X5 C3  C6  SING N N 7  
8X5 O1  C22 DOUB N N 8  
8X5 C6  N   SING N N 9  
8X5 C22 N   SING N N 10 
8X5 C22 C10 SING N N 11 
8X5 N   C7  SING N N 12 
8X5 C11 C10 SING Y N 13 
8X5 C11 C12 DOUB Y N 14 
8X5 C10 C9  DOUB Y N 15 
8X5 C14 C15 DOUB Y N 16 
8X5 C14 C13 SING Y N 17 
8X5 C12 C13 SING N N 18 
8X5 C12 N1  SING Y N 19 
8X5 C15 N2  SING Y N 20 
8X5 C9  C8  SING N N 21 
8X5 C9  N1  SING Y N 22 
8X5 C13 N3  DOUB Y N 23 
8X5 C7  C8  SING N N 24 
8X5 N2  C16 DOUB Y N 25 
8X5 N3  C16 SING Y N 26 
8X5 C16 N4  SING N N 27 
8X5 N4  C17 SING N N 28 
8X5 C17 C21 SING N N 29 
8X5 C17 C18 SING N N 30 
8X5 C21 C20 SING N N 31 
8X5 C20 O   SING N N 32 
8X5 C18 C19 SING N N 33 
8X5 C19 O   SING N N 34 
8X5 C1  H1  SING N N 35 
8X5 C2  H2  SING N N 36 
8X5 C7  H3  SING N N 37 
8X5 C7  H4  SING N N 38 
8X5 C8  H5  SING N N 39 
8X5 C8  H6  SING N N 40 
8X5 C11 H7  SING N N 41 
8X5 C14 H8  SING N N 42 
8X5 C15 H9  SING N N 43 
8X5 C19 H10 SING N N 44 
8X5 C19 H11 SING N N 45 
8X5 C20 H12 SING N N 46 
8X5 C20 H13 SING N N 47 
8X5 C21 H14 SING N N 48 
8X5 C21 H15 SING N N 49 
8X5 C6  H16 SING N N 50 
8X5 C6  H17 SING N N 51 
8X5 C4  H18 SING N N 52 
8X5 C5  H19 SING N N 53 
8X5 C   H20 SING N N 54 
8X5 N1  H21 SING N N 55 
8X5 N4  H22 SING N N 56 
8X5 C17 H23 SING N N 57 
8X5 C18 H24 SING N N 58 
8X5 C18 H25 SING N N 59 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
8X5 InChI            InChI                1.03  "InChI=1S/C23H25N5O2/c29-22-18-14-21(20-6-10-24-23(27-20)25-17-8-12-30-13-9-17)26-19(18)7-11-28(22)15-16-4-2-1-3-5-16/h1-6,10,14,17,26H,7-9,11-13,15H2,(H,24,25,27)" 
8X5 InChIKey         InChI                1.03  KERNFUCXORNNFU-UHFFFAOYSA-N                                                                                                                                          
8X5 SMILES_CANONICAL CACTVS               3.385 "O=C1N(CCc2[nH]c(cc12)c3ccnc(NC4CCOCC4)n3)Cc5ccccc5"                                                                                                                 
8X5 SMILES           CACTVS               3.385 "O=C1N(CCc2[nH]c(cc12)c3ccnc(NC4CCOCC4)n3)Cc5ccccc5"                                                                                                                 
8X5 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.6 "c1ccc(cc1)CN2CCc3c(cc([nH]3)c4ccnc(n4)NC5CCOCC5)C2=O"                                                                                                               
8X5 SMILES           "OpenEye OEToolkits" 2.0.6 "c1ccc(cc1)CN2CCc3c(cc([nH]3)c4ccnc(n4)NC5CCOCC5)C2=O"                                                                                                               
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
8X5 "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.6 "2-[2-(oxan-4-ylamino)pyrimidin-4-yl]-5-(phenylmethyl)-6,7-dihydro-1~{H}-pyrrolo[3,2-c]pyridin-4-one" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
8X5 "Create component" 2017-03-21 EBI  
8X5 "Initial release"  2017-04-19 RCSB 
# 
