data_8P5
# 
_chem_comp.id                                    8P5 
_chem_comp.name                                  "azanylidene-[4-[[(1~{S},2~{R},3~{R},4~{R},5~{S},6~{S},7~{S})-2-(hydroxymethyl)-3,4,5-tris(oxidanyl)-7-bicyclo[4.1.0]heptanyl]carbonylamino]butylimino]azanium" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C13 H23 N4 O5" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    1 
_chem_comp.pdbx_initial_date                     2017-02-16 
_chem_comp.pdbx_modified_date                    2017-02-24 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        315.346 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     8P5 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        5N6S 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  EBI 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
8P5 O3  O1  O 0 1 N N N -3.390  -9.136  10.513 -4.883 1.851  -1.477 O3  8P5 1  
8P5 C4  C1  C 0 1 N N R -4.982  -7.911  9.233  -4.159 -0.291 -0.695 C4  8P5 2  
8P5 C5  C2  C 0 1 N N R -6.448  -7.760  8.932  -3.626 -1.109 0.462  C5  8P5 3  
8P5 O4  O2  O 0 1 N N N -4.449  -6.649  9.692  -5.444 -0.797 -1.063 O4  8P5 4  
8P5 C6  C3  C 0 1 N N N -6.615  -6.798  7.786  -3.238 -2.497 -0.052 C6  8P5 5  
8P5 N1  N1  N 0 1 N N N -10.998 -12.624 -0.668 8.925  -0.873 -1.068 N1  8P5 6  
8P5 C7  C4  C 0 1 N N S -7.076  -9.059  8.486  -2.415 -0.475 1.115  C7  8P5 7  
8P5 C8  C5  C 0 1 N N S -6.259  -9.770  7.375  -1.215 -0.063 0.275  C8  8P5 8  
8P5 C9  C6  C 0 1 N N N -7.066  -10.078 6.148  0.155  -0.258 0.873  C9  8P5 9  
8P5 O6  O3  O 0 1 N N N -7.154  -5.584  8.285  -4.408 -3.183 -0.501 O6  8P5 10 
8P5 C12 C7  C 0 1 N N N -9.189  -10.982 5.672  2.583  -0.099 0.754  C12 8P5 11 
8P5 C13 C8  C 0 1 N N N -9.197  -11.675 4.352  3.646  0.373  -0.240 C13 8P5 12 
8P5 C14 C9  C 0 1 N N N -9.419  -10.701 3.226  5.036  0.176  0.367  C14 8P5 13 
8P5 C15 C10 C 0 1 N N N -9.163  -11.447 1.936  6.099  0.648  -0.627 C15 8P5 14 
8P5 O10 O4  O 0 1 N N N -7.120  -9.254  5.224  0.269  -0.727 1.985  O10 8P5 15 
8P5 N11 N2  N 0 1 N N N -7.871  -11.107 6.238  1.252  0.090  0.172  N11 8P5 16 
8P5 N16 N3  N 0 1 N N N -10.177 -12.462 1.697  7.430  0.459  -0.045 N16 8P5 17 
8P5 N17 N4  N 1 1 N N N -10.664 -12.589 0.422  8.178  -0.207 -0.557 N17 8P5 18 
8P5 C1  C11 C 0 1 N N S -6.471  -10.420 8.756  -2.123 1.002  0.910  C1  8P5 19 
8P5 C2  C12 C 0 1 N N S -5.308  -10.455 9.758  -2.961 1.832  -0.051 C2  8P5 20 
8P5 O2  O5  O 0 1 N N N -5.728  -11.247 10.875 -3.200 3.114  0.533  O2  8P5 21 
8P5 C3  C13 C 0 1 N N R -4.793  -9.069  10.234 -4.291 1.179  -0.364 C3  8P5 22 
8P5 H1  H1  H 0 1 N N N -3.222  -9.839  11.129 -5.763 1.525  -1.711 H1  8P5 23 
8P5 H2  H2  H 0 1 N N N -4.471  -8.192  8.300  -3.483 -0.401 -1.543 H2  8P5 24 
8P5 H3  H3  H 0 1 N N N -6.974  -7.378  9.819  -4.412 -1.218 1.208  H3  8P5 25 
8P5 H4  H4  H 0 1 N N N -3.523  -6.746  9.882  -5.834 -0.359 -1.832 H4  8P5 26 
8P5 H5  H5  H 0 1 N N N -7.299  -7.227  7.039  -2.536 -2.395 -0.880 H5  8P5 27 
8P5 H6  H6  H 0 1 N N N -5.638  -6.605  7.320  -2.770 -3.064 0.753  H6  8P5 28 
8P5 H8  H8  H 0 1 N N N -8.164  -9.039  8.328  -2.174 -0.872 2.101  H8  8P5 29 
8P5 H9  H9  H 0 1 N N N -5.254  -9.358  7.200  -1.282 -0.205 -0.804 H9  8P5 30 
8P5 H10 H10 H 0 1 N N N -7.264  -4.968  7.570  -4.236 -4.072 -0.841 H10 8P5 31 
8P5 H11 H11 H 0 1 N N N -9.436  -9.919  5.536  2.736  -1.155 0.975  H11 8P5 32 
8P5 H12 H12 H 0 1 N N N -9.927  -11.448 6.341  2.664  0.481  1.674  H12 8P5 33 
8P5 H13 H13 H 0 1 N N N -10.004 -12.422 4.344  3.566  -0.206 -1.160 H13 8P5 34 
8P5 H14 H14 H 0 1 N N N -8.230  -12.178 4.205  3.493  1.430  -0.462 H14 8P5 35 
8P5 H15 H15 H 0 1 N N N -8.723  -9.854  3.317  5.117  0.755  1.287  H15 8P5 36 
8P5 H16 H16 H 0 1 N N N -10.454 -10.329 3.248  5.189  -0.880 0.589  H16 8P5 37 
8P5 H17 H17 H 0 1 N N N -8.178  -11.933 1.993  6.019  0.068  -1.547 H17 8P5 38 
8P5 H18 H18 H 0 1 N N N -9.171  -10.731 1.101  5.946  1.704  -0.849 H18 8P5 39 
8P5 H19 H19 H 0 1 N N N -7.580  -11.952 6.685  1.161  0.466  -0.717 H19 8P5 40 
8P5 H20 H20 H 0 1 N N N -7.167  -11.271 8.789  -1.720 1.551  1.761  H20 8P5 41 
8P5 H21 H21 H 0 1 N N N -4.465  -10.962 9.265  -2.406 1.966  -0.979 H21 8P5 42 
8P5 H22 H22 H 0 1 N N N -5.028  -11.288 11.516 -3.730 3.705  -0.020 H22 8P5 43 
8P5 H23 H23 H 0 1 N N N -5.334  -8.809  11.156 -4.947 1.288  0.499  H23 8P5 44 
8P5 H24 H24 H 0 1 N N N -10.462 -12.006 -1.244 8.963  -1.817 -0.850 H24 8P5 45 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
8P5 N1  N17 DOUB N N 1  
8P5 N17 N16 DOUB N N 2  
8P5 N16 C15 SING N N 3  
8P5 C15 C14 SING N N 4  
8P5 C14 C13 SING N N 5  
8P5 C13 C12 SING N N 6  
8P5 O10 C9  DOUB N N 7  
8P5 C12 N11 SING N N 8  
8P5 C9  N11 SING N N 9  
8P5 C9  C8  SING N N 10 
8P5 C8  C7  SING N N 11 
8P5 C8  C1  SING N N 12 
8P5 C6  O6  SING N N 13 
8P5 C6  C5  SING N N 14 
8P5 C7  C1  SING N N 15 
8P5 C7  C5  SING N N 16 
8P5 C1  C2  SING N N 17 
8P5 C5  C4  SING N N 18 
8P5 C4  O4  SING N N 19 
8P5 C4  C3  SING N N 20 
8P5 C2  C3  SING N N 21 
8P5 C2  O2  SING N N 22 
8P5 C3  O3  SING N N 23 
8P5 O3  H1  SING N N 24 
8P5 C4  H2  SING N N 25 
8P5 C5  H3  SING N N 26 
8P5 O4  H4  SING N N 27 
8P5 C6  H5  SING N N 28 
8P5 C6  H6  SING N N 29 
8P5 C7  H8  SING N N 30 
8P5 C8  H9  SING N N 31 
8P5 O6  H10 SING N N 32 
8P5 C12 H11 SING N N 33 
8P5 C12 H12 SING N N 34 
8P5 C13 H13 SING N N 35 
8P5 C13 H14 SING N N 36 
8P5 C14 H15 SING N N 37 
8P5 C14 H16 SING N N 38 
8P5 C15 H17 SING N N 39 
8P5 C15 H18 SING N N 40 
8P5 N11 H19 SING N N 41 
8P5 C1  H20 SING N N 42 
8P5 C2  H21 SING N N 43 
8P5 O2  H22 SING N N 44 
8P5 C3  H23 SING N N 45 
8P5 N1  H24 SING N N 46 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
8P5 InChI            InChI                1.03  "InChI=1S/C13H22N4O5/c14-17-16-4-2-1-3-15-13(22)9-7-6(5-18)10(19)12(21)11(20)8(7)9/h6-12,14,18-21H,1-5H2/p+1/t6-,7+,8-,9-,10+,11-,12-/m0/s1" 
8P5 InChIKey         InChI                1.03  AGQBRQFVJQUDGP-MQOZHFKUSA-O                                                                                                                  
8P5 SMILES_CANONICAL CACTVS               3.385 "OC[C@@H]1[C@@H](O)[C@H](O)[C@@H](O)[C@H]2[C@@H]1[C@@H]2C(=O)NCCCCN=[N+]=N"                                                                  
8P5 SMILES           CACTVS               3.385 "OC[CH]1[CH](O)[CH](O)[CH](O)[CH]2[CH]1[CH]2C(=O)NCCCCN=[N+]=N"                                                                              
8P5 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.6 "C(CCN=[N+]=N)CNC(=O)[C@H]1[C@H]2[C@@H]1[C@@H]([C@H]([C@@H]([C@H]2CO)O)O)O"                                                                  
8P5 SMILES           "OpenEye OEToolkits" 2.0.6 "C(CCN=[N+]=N)CNC(=O)C1C2C1C(C(C(C2CO)O)O)O"                                                                                                 
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
8P5 "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.6 "azanylidene-[4-[[(1~{S},2~{R},3~{R},4~{R},5~{S},6~{S},7~{S})-2-(hydroxymethyl)-3,4,5-tris(oxidanyl)-7-bicyclo[4.1.0]heptanyl]carbonylamino]butylimino]azanium" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
8P5 "Create component" 2017-02-16 EBI  
8P5 "Initial release"  2017-03-01 RCSB 
# 
