data_8L5
# 
_chem_comp.id                                    8L5 
_chem_comp.name                                  "N-(aminomethyl)-N~2~-[(R)-({[(benzyloxy)carbonyl]amino}methyl)(hydroxy)phosphoryl]-L-leucinamide" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C16 H27 N4 O5 P" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2017-02-09 
_chem_comp.pdbx_modified_date                    2024-05-08 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        386.383 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     8L5 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        5N3V 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  EBI 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
8L5 C10 C1  C 0 1 N N N N N N 13.880 40.137 -11.488 -4.596 -1.080 -0.159 C10 8L5 1  
8L5 C11 C2  C 0 1 Y N N N N N 15.367 40.383 -11.550 -5.925 -0.452 -0.489 C11 8L5 2  
8L5 C12 C3  C 0 1 Y N N N N N 16.014 41.172 -10.611 -6.088 0.240  -1.675 C12 8L5 3  
8L5 C13 C4  C 0 1 Y N N N N N 17.371 41.391 -10.694 -7.307 0.816  -1.977 C13 8L5 4  
8L5 C14 C5  C 0 1 Y N N N N N 18.118 40.831 -11.713 -8.365 0.700  -1.094 C14 8L5 5  
8L5 C15 C6  C 0 1 Y N N N N N 17.504 40.020 -12.635 -8.203 0.007  0.091  C15 8L5 6  
8L5 C16 C7  C 0 1 Y N N N N N 16.141 39.793 -12.565 -6.984 -0.573 0.391  C16 8L5 7  
8L5 O01 O1  O 0 1 N N N N N N 10.121 38.160 -6.601  0.475  -0.212 -0.535 O01 8L5 8  
8L5 P01 P1  P 0 1 N N N N N N 11.473 38.554 -6.026  0.818  0.388  0.774  P01 8L5 9  
8L5 N01 N1  N 0 1 N N N N N N 11.210 39.142 -4.499  2.353  -0.121 1.240  N01 8L5 10 
8L5 C01 C8  C 0 1 N N S N N N 10.097 38.623 -3.685  3.346  0.186  0.202  C01 8L5 11 
8L5 C02 C9  C 0 1 N N N N N N 10.476 38.697 -2.205  4.023  1.520  0.524  C02 8L5 12 
8L5 C03 C10 C 0 1 N N N N N N 9.446  38.147 -1.247  4.954  1.910  -0.627 C03 8L5 13 
8L5 C04 C11 C 0 1 N N N N N N 9.308  36.628 -1.369  4.123  2.217  -1.874 C04 8L5 14 
8L5 C05 C12 C 0 1 N N N N N N 9.751  38.543 0.182   5.760  3.150  -0.233 C05 8L5 15 
8L5 C06 C13 C 0 1 N N N N N N 8.841  39.450 -3.892  4.384  -0.906 0.161  C06 8L5 16 
8L5 O02 O2  O 0 1 N N N N N N 7.732  38.993 -3.838  4.456  -1.709 1.067  O02 8L5 17 
8L5 O03 O3  O 0 1 N N N N N N 12.440 37.405 -6.097  0.799  1.993  0.650  O03 8L5 18 
8L5 C08 C14 C 0 1 N N N N N N 12.170 39.972 -6.947  -0.402 -0.140 2.023  C08 8L5 19 
8L5 N04 N2  N 0 1 N N N N N N 12.806 39.511 -8.140  -1.738 0.304  1.617  N04 8L5 20 
8L5 C09 C15 C 0 1 N N N N N N 12.906 40.231 -9.310  -2.549 -0.533 0.940  C09 8L5 21 
8L5 O04 O4  O 0 1 N N N N N N 13.540 39.489 -10.283 -3.777 -0.126 0.568  O04 8L5 22 
8L5 O05 O5  O 0 1 N N N N N N 12.496 41.349 -9.422  -2.171 -1.655 0.665  O05 8L5 23 
8L5 N02 N3  N 0 1 N N N N N N 9.057  40.810 -4.053  5.231  -0.992 -0.884 N02 8L5 24 
8L5 C07 C16 C 0 1 N N N N N N 7.980  41.790 -4.153  6.167  -2.115 -0.979 C07 8L5 25 
8L5 N03 N4  N 0 1 N N N N N N 7.528  42.128 -2.889  5.582  -3.170 -1.817 N03 8L5 26 
8L5 H22 H1  H 0 1 N N N N N N 13.351 41.100 -11.544 -4.755 -1.965 0.457  H22 8L5 27 
8L5 H21 H2  H 0 1 N N N N N N 13.581 39.504 -12.337 -4.090 -1.365 -1.081 H21 8L5 28 
8L5 H23 H3  H 0 1 N N N N N N 15.448 41.619 -9.807  -5.262 0.331  -2.364 H23 8L5 29 
8L5 H24 H4  H 0 1 N N N N N N 17.858 42.008 -9.953  -7.434 1.357  -2.903 H24 8L5 30 
8L5 H25 H5  H 0 1 N N N N N N 19.177 41.030 -11.784 -9.317 1.150  -1.331 H25 8L5 31 
8L5 H26 H6  H 0 1 N N N N N N 18.087 39.558 -13.418 -9.029 -0.083 0.781  H26 8L5 32 
8L5 H27 H7  H 0 1 N N N N N N 15.667 39.156 -13.297 -6.859 -1.117 1.316  H27 8L5 33 
8L5 H02 H10 H 0 1 N N N N N N 9.892  37.576 -3.954  2.851  0.254  -0.766 H02 8L5 34 
8L5 H03 H11 H 0 1 N N N N N N 11.408 38.130 -2.064  3.264  2.291  0.653  H03 8L5 35 
8L5 H04 H12 H 0 1 N N N N N N 10.647 39.753 -1.950  4.602  1.422  1.442  H04 8L5 36 
8L5 H05 H13 H 0 1 N N N N N N 8.474  38.588 -1.514  5.636  1.086  -0.837 H05 8L5 37 
8L5 H06 H14 H 0 1 N N N N N N 8.550  36.270 -0.656  3.494  3.087  -1.687 H06 8L5 38 
8L5 H08 H15 H 0 1 N N N N N N 9.000  36.369 -2.393  4.788  2.422  -2.712 H08 8L5 39 
8L5 H07 H16 H 0 1 N N N N N N 10.275 36.153 -1.146  3.494  1.359  -2.111 H07 8L5 40 
8L5 H09 H17 H 0 1 N N N N N N 8.983  38.127 0.850   6.352  2.931  0.656  H09 8L5 41 
8L5 H11 H18 H 0 1 N N N N N N 10.738 38.151 0.468   6.423  3.428  -1.052 H11 8L5 42 
8L5 H10 H19 H 0 1 N N N N N N 9.754  39.640 0.266   5.078  3.974  -0.022 H10 8L5 43 
8L5 H2  H20 H 0 1 N N N N N N 12.012 36.654 -6.490  1.088  2.453  1.451  H2  8L5 44 
8L5 H20 H23 H 0 1 N N N N N N 13.209 38.596 -8.125  -2.039 1.199  1.837  H20 8L5 45 
8L5 H12 H24 H 0 1 N N N N N N 10.001 41.137 -4.103  5.221  -0.309 -1.574 H12 8L5 46 
8L5 H13 H25 H 0 1 N N N N N N 8.354  42.692 -4.659  7.101  -1.773 -1.424 H13 8L5 47 
8L5 H14 H26 H 0 1 N N N N N N 7.150  41.361 -4.734  6.362  -2.510 0.018  H14 8L5 48 
8L5 H16 H27 H 0 1 N N N N N N 6.791  42.799 -2.967  6.209  -3.956 -1.898 H16 8L5 49 
8L5 H3  H28 H 0 1 N N N N N N 7.186  41.309 -2.427  4.683  -3.459 -1.461 H3  8L5 50 
8L5 H01 H30 H 0 1 N N N N N N 12.048 38.977 -3.979  2.616  0.286  2.124  H01 8L5 51 
8L5 H18 H31 H 0 1 N N N N N N 11.361 40.669 -7.211  -0.389 -1.226 2.106  H18 8L5 52 
8L5 H19 H32 H 0 1 N N N N N N 12.908 40.489 -6.316  -0.149 0.302  2.986  H19 8L5 53 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
8L5 C10 C11 SING N N 1  
8L5 C10 O04 SING N N 2  
8L5 C11 C12 DOUB Y N 3  
8L5 C11 C16 SING Y N 4  
8L5 C12 C13 SING Y N 5  
8L5 C13 C14 DOUB Y N 6  
8L5 C14 C15 SING Y N 7  
8L5 C15 C16 DOUB Y N 8  
8L5 O01 P01 DOUB N N 9  
8L5 P01 N01 SING N N 10 
8L5 P01 O03 SING N N 11 
8L5 P01 C08 SING N N 12 
8L5 N01 C01 SING N N 13 
8L5 C01 C02 SING N N 14 
8L5 C01 C06 SING N N 15 
8L5 C02 C03 SING N N 16 
8L5 C03 C04 SING N N 17 
8L5 C03 C05 SING N N 18 
8L5 C06 O02 DOUB N N 19 
8L5 C06 N02 SING N N 20 
8L5 C08 N04 SING N N 21 
8L5 N04 C09 SING N N 22 
8L5 C09 O04 SING N N 23 
8L5 C09 O05 DOUB N N 24 
8L5 N02 C07 SING N N 25 
8L5 C07 N03 SING N N 26 
8L5 C10 H22 SING N N 27 
8L5 C10 H21 SING N N 28 
8L5 C12 H23 SING N N 29 
8L5 C13 H24 SING N N 30 
8L5 C14 H25 SING N N 31 
8L5 C15 H26 SING N N 32 
8L5 C16 H27 SING N N 33 
8L5 N01 H01 SING N N 34 
8L5 C01 H02 SING N N 35 
8L5 C02 H03 SING N N 36 
8L5 C02 H04 SING N N 37 
8L5 C03 H05 SING N N 38 
8L5 C04 H06 SING N N 39 
8L5 C04 H08 SING N N 40 
8L5 C04 H07 SING N N 41 
8L5 C05 H09 SING N N 42 
8L5 C05 H11 SING N N 43 
8L5 C05 H10 SING N N 44 
8L5 O03 H2  SING N N 45 
8L5 C08 H18 SING N N 46 
8L5 C08 H19 SING N N 47 
8L5 N04 H20 SING N N 48 
8L5 N02 H12 SING N N 49 
8L5 C07 H13 SING N N 50 
8L5 C07 H14 SING N N 51 
8L5 N03 H16 SING N N 52 
8L5 N03 H3  SING N N 53 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
8L5 SMILES           ACDLabs              12.01 "NCNC(=O)C(CC(C)C)NP(=O)(O)CNC(=O)OCc1ccccc1"                                                                                                                          
8L5 InChI            InChI                1.06  "InChI=1S/C16H27N4O5P/c1-12(2)8-14(15(21)18-10-17)20-26(23,24)11-19-16(22)25-9-13-6-4-3-5-7-13/h3-7,12,14H,8-11,17H2,1-2H3,(H,18,21)(H,19,22)(H2,20,23,24)/t14-/m0/s1" 
8L5 InChIKey         InChI                1.06  ZWHZNGLEKAHTFA-AWEZNQCLSA-N                                                                                                                                            
8L5 SMILES_CANONICAL CACTVS               3.385 "CC(C)C[C@H](N[P](O)(=O)CNC(=O)OCc1ccccc1)C(=O)NCN"                                                                                                                    
8L5 SMILES           CACTVS               3.385 "CC(C)C[CH](N[P](O)(=O)CNC(=O)OCc1ccccc1)C(=O)NCN"                                                                                                                     
8L5 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CC(C)C[C@@H](C(=O)NCN)NP(=O)(CNC(=O)OCc1ccccc1)O"                                                                                                                     
8L5 SMILES           "OpenEye OEToolkits" 2.0.7 "CC(C)CC(C(=O)NCN)NP(=O)(CNC(=O)OCc1ccccc1)O"                                                                                                                          
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
8L5 "SYSTEMATIC NAME" ACDLabs              12.01 "N-(aminomethyl)-N~2~-[(R)-({[(benzyloxy)carbonyl]amino}methyl)(hydroxy)phosphoryl]-L-leucinamide"                               
8L5 "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "~{N}-[(2~{S})-1-(aminomethylamino)-4-methyl-1-oxidanylidene-pentan-2-yl]-(phenylmethoxycarbonylaminomethyl)phosphonamidic acid" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
8L5 "Create component"   2017-02-09 EBI  
8L5 "Initial release"    2017-06-21 RCSB 
8L5 "Other modification" 2024-05-08 RCSB 
# 
