data_8I5
# 
_chem_comp.id                                    8I5 
_chem_comp.name                                  "3N methyl nemycin B" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C24 H48 N6 O13" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2021-10-19 
_chem_comp.pdbx_modified_date                    2022-10-28 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        628.670 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     8I5 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        7Q10 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBE 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
8I5 C6  C1  C 0 1 N N N 11.057 41.989 19.436 3.478  -3.201 -2.454 C6  8I5 1  
8I5 C14 C2  C 0 1 N N R 8.557  44.037 26.624 -1.663 2.078  0.516  C14 8I5 2  
8I5 C15 C3  C 0 1 N N R 8.727  42.551 26.924 -2.008 0.851  1.389  C15 8I5 3  
8I5 C16 C4  C 0 1 N N S 9.752  42.149 25.864 -0.708 0.573  2.176  C16 8I5 4  
8I5 C10 C5  C 0 1 N N R 10.410 45.534 22.375 2.922  0.870  -0.284 C10 8I5 5  
8I5 O11 O1  O 0 1 N N N 9.340  44.614 24.401 0.693  1.775  -0.053 O11 8I5 6  
8I5 C12 C6  C 0 1 N N S 8.572  46.753 23.626 2.482  3.311  -0.583 C12 8I5 7  
8I5 C13 C7  C 0 1 N N S 9.759  44.432 25.761 -0.195 2.396  0.878  C13 8I5 8  
8I5 O1  O2  O 0 1 N N N 11.678 44.878 22.485 2.541  -0.305 0.434  O1  8I5 9  
8I5 CH3 C8  C 0 1 N N N 11.383 47.781 19.470 6.640  0.265  -0.211 CH3 8I5 10 
8I5 C1  C9  C 0 1 N N R 11.650 43.485 22.800 1.474  -1.037 -0.172 C1  8I5 11 
8I5 C11 C10 C 0 1 N N R 9.782  45.818 23.754 2.074  2.053  0.187  C11 8I5 12 
8I5 C17 C11 C 0 1 N N N 10.538 40.867 26.107 -1.034 0.119  3.600  C17 8I5 13 
8I5 C18 C12 C 0 1 N N R 7.368  40.642 27.521 -3.745 -0.374 0.282  C18 8I5 14 
8I5 C19 C13 C 0 1 N N S 6.803  39.540 26.590 -4.028 -1.724 -0.384 C19 8I5 15 
8I5 C2  C14 C 0 1 N N S 13.083 43.054 23.135 0.953  -2.088 0.812  C2  8I5 16 
8I5 C20 C15 C 0 1 N N R 5.478  38.891 27.024 -5.515 -1.805 -0.742 C20 8I5 17 
8I5 C21 C16 C 0 1 N N S 5.211  39.018 28.520 -5.877 -0.623 -1.647 C21 8I5 18 
8I5 C22 C17 C 0 1 N N S 5.318  40.483 28.922 -5.522 0.683  -0.933 C22 8I5 19 
8I5 C23 C18 C 0 1 N N N 4.372  41.403 28.139 -5.825 1.867  -1.854 C23 8I5 20 
8I5 C3  C19 C 0 1 N N R 13.930 42.847 21.876 2.076  -3.081 1.129  C3  8I5 21 
8I5 C4  C20 C 0 1 N N S 13.181 42.045 20.810 2.575  -3.704 -0.178 C4  8I5 22 
8I5 C5  C21 C 0 1 N N R 11.827 42.697 20.542 3.034  -2.591 -1.123 C5  8I5 23 
8I5 C7  C22 C 0 1 N N R 8.920  48.034 22.866 3.960  3.609  -0.326 C7  8I5 24 
8I5 C8  C23 C 0 1 N N N 9.399  47.682 21.467 4.808  2.426  -0.797 C8  8I5 25 
8I5 C9  C24 C 0 1 N N S 10.660 46.827 21.579 4.401  1.168  -0.028 C9  8I5 26 
8I5 N19 N1  N 0 1 N N N 2.964  41.032 28.375 -5.485 3.121  -1.168 N19 8I5 27 
8I5 N2  N2  N 0 1 N N N 13.065 41.832 23.963 -0.180 -2.805 0.210  N2  8I5 28 
8I5 N23 N3  N 0 1 N N N 7.809  38.484 26.334 -3.686 -2.810 0.543  N23 8I5 29 
8I5 N6  N4  N 0 1 N N N 10.832 42.975 18.363 4.057  -2.153 -3.305 N6  8I5 30 
8I5 N7  N5  N 0 1 N N N 7.756  48.940 22.778 4.352  4.817  -1.065 N7  8I5 31 
8I5 N9  N6  N 0 1 N N N 11.193 46.529 20.227 5.215  0.032  -0.480 N9  8I5 32 
8I5 O12 O3  O 0 1 N N N 8.065  47.073 24.931 1.690  4.416  -0.143 O12 8I5 33 
8I5 O14 O4  O 0 1 N N N 8.503  44.805 27.829 -2.510 3.181  0.845  O14 8I5 34 
8I5 O16 O5  O 0 1 N N N 10.614 43.286 25.805 -0.012 1.838  2.198  O16 8I5 35 
8I5 O17 O6  O 0 1 N N N 10.062 39.899 25.163 0.173  -0.244 4.273  O17 8I5 36 
8I5 O18 O7  O 0 1 N N N 7.471  41.875 26.788 -2.349 -0.268 0.568  O18 8I5 37 
8I5 O20 O8  O 0 1 N N N 5.473  37.506 26.636 -6.298 -1.751 0.452  O20 8I5 38 
8I5 O21 O9  O 0 1 N N N 3.913  38.502 28.848 -5.141 -0.715 -2.869 O21 8I5 39 
8I5 O22 O10 O 0 1 N N N 6.689  40.884 28.775 -4.132 0.681  -0.600 O22 8I5 40 
8I5 O3  O11 O 0 1 N N N 15.163 42.193 22.221 1.577  -4.108 1.989  O3  8I5 41 
8I5 O4  O12 O 0 1 N N N 13.954 41.996 19.601 3.671  -4.579 0.098  O4  8I5 42 
8I5 O5  O13 O 0 1 N N N 11.055 42.707 21.744 1.952  -1.686 -1.352 O5  8I5 43 
8I5 H1  H1  H 0 1 N N N 10.093 41.624 19.821 4.226  -3.973 -2.268 H1  8I5 44 
8I5 H2  H2  H 0 1 N N N 11.643 41.141 19.052 2.618  -3.644 -2.956 H2  8I5 45 
8I5 H3  H3  H 0 1 N N N 7.637  44.180 26.039 -1.752 1.832  -0.542 H3  8I5 46 
8I5 H4  H4  H 0 1 N N N 9.151  42.414 27.930 -2.825 1.086  2.072  H4  8I5 47 
8I5 H5  H5  H 0 1 N N N 9.223  42.046 24.905 -0.110 -0.182 1.666  H5  8I5 48 
8I5 H6  H6  H 0 1 N N N 9.714  44.904 21.802 2.763  0.711  -1.351 H6  8I5 49 
8I5 H7  H7  H 0 1 N N N 7.794  46.222 23.057 2.323  3.152  -1.649 H7  8I5 50 
8I5 H8  H8  H 0 1 N N N 10.248 45.330 26.166 -0.032 3.474  0.896  H8  8I5 51 
8I5 H9  H9  H 0 1 N N N 11.778 47.549 18.470 7.228  -0.544 -0.642 H9  8I5 52 
8I5 H10 H10 H 0 1 N N N 10.418 48.300 19.372 6.944  1.212  -0.657 H10 8I5 53 
8I5 H11 H11 H 0 1 N N N 12.094 48.428 20.004 6.805  0.301  0.866  H11 8I5 54 
8I5 H12 H12 H 0 1 N N N 11.049 43.347 23.711 0.667  -0.353 -0.434 H12 8I5 55 
8I5 H13 H13 H 0 1 N N N 10.538 46.316 24.379 2.233  2.212  1.253  H13 8I5 56 
8I5 H14 H14 H 0 1 N N N 10.369 40.509 27.133 -1.519 0.934  4.139  H14 8I5 57 
8I5 H15 H15 H 0 1 N N N 11.612 41.048 25.954 -1.702 -0.741 3.564  H15 8I5 58 
8I5 H16 H16 H 0 1 N N N 8.393  40.328 27.768 -4.313 -0.300 1.209  H16 8I5 59 
8I5 H17 H17 H 0 1 N N N 6.603  40.030 25.626 -3.429 -1.815 -1.291 H17 8I5 60 
8I5 H18 H18 H 0 1 N N N 13.546 43.862 23.720 0.628  -1.599 1.730  H18 8I5 61 
8I5 H19 H19 H 0 1 N N N 4.666  39.410 26.494 -5.713 -2.740 -1.267 H19 8I5 62 
8I5 H20 H20 H 0 1 N N N 5.983  38.451 29.061 -6.945 -0.644 -1.863 H20 8I5 63 
8I5 H21 H21 H 0 1 N N N 5.043  40.556 29.984 -6.114 0.771  -0.021 H21 8I5 64 
8I5 H22 H22 H 0 1 N N N 4.592  41.316 27.065 -5.234 1.779  -2.765 H22 8I5 65 
8I5 H23 H23 H 0 1 N N N 4.530  42.442 28.463 -6.885 1.867  -2.107 H23 8I5 66 
8I5 H24 H24 H 0 1 N N N 14.155 43.838 21.455 2.896  -2.558 1.622  H24 8I5 67 
8I5 H25 H25 H 0 1 N N N 13.013 41.026 21.189 1.768  -4.268 -0.645 H25 8I5 68 
8I5 H26 H26 H 0 1 N N N 12.008 43.733 20.220 3.868  -2.053 -0.673 H26 8I5 69 
8I5 H27 H27 H 0 1 N N N 9.736  48.545 23.398 4.119  3.768  0.740  H27 8I5 70 
8I5 H28 H28 H 0 1 N N N 9.625  48.604 20.911 4.649  2.267  -1.864 H28 8I5 71 
8I5 H29 H29 H 0 1 N N N 8.616  47.118 20.939 5.861  2.638  -0.615 H29 8I5 72 
8I5 H30 H30 H 0 1 N N N 11.414 47.413 22.125 4.560  1.327  1.039  H30 8I5 73 
8I5 H31 H31 H 0 1 N N N 2.366  41.643 27.856 -5.676 3.918  -1.756 H31 8I5 74 
8I5 H32 H32 H 0 1 N N N 2.814  40.089 28.079 -5.973 3.195  -0.288 H32 8I5 75 
8I5 H34 H34 H 0 1 N N N 12.507 41.989 24.778 -0.932 -2.170 -0.013 H34 8I5 76 
8I5 H35 H35 H 0 1 N N N 12.677 41.077 23.434 0.112  -3.321 -0.607 H35 8I5 77 
8I5 H37 H37 H 0 1 N N N 8.671  38.905 26.052 -2.709 -2.777 0.794  H37 8I5 78 
8I5 H38 H38 H 0 1 N N N 7.955  37.954 27.169 -4.271 -2.782 1.365  H38 8I5 79 
8I5 H40 H40 H 0 1 N N N 10.326 42.545 17.615 4.444  -2.546 -4.149 H40 8I5 80 
8I5 H41 H41 H 0 1 N N N 10.304 43.744 18.723 3.374  -1.442 -3.517 H41 8I5 81 
8I5 H43 H43 H 0 1 N N N 7.442  49.171 23.699 5.325  5.035  -0.912 H43 8I5 82 
8I5 H44 H44 H 0 1 N N N 8.020  49.776 22.297 4.154  4.719  -2.049 H44 8I5 83 
8I5 H46 H46 H 0 1 N N N 10.547 45.942 19.739 5.058  -0.158 -1.459 H46 8I5 84 
8I5 H48 H48 H 0 1 N N N 7.852  46.271 25.394 1.894  5.249  -0.589 H48 8I5 85 
8I5 H49 H49 H 0 1 N N N 7.749  44.538 28.342 -2.336 3.979  0.326  H49 8I5 86 
8I5 H50 H50 H 0 1 N N N 10.531 39.081 25.284 0.042  -0.542 5.183  H50 8I5 87 
8I5 H51 H51 H 0 1 N N N 4.655  37.105 26.904 -7.252 -1.798 0.299  H51 8I5 88 
8I5 H52 H52 H 0 1 N N N 3.764  38.589 29.782 -5.313 -1.522 -3.372 H52 8I5 89 
8I5 H53 H53 H 0 1 N N N 15.617 42.701 22.883 2.237  -4.772 2.231  H53 8I5 90 
8I5 H54 H54 H 0 1 N N N 14.794 41.589 19.778 3.452  -5.307 0.696  H54 8I5 91 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
8I5 N6  C6  SING N N 1  
8I5 C6  C5  SING N N 2  
8I5 CH3 N9  SING N N 3  
8I5 O4  C4  SING N N 4  
8I5 N9  C9  SING N N 5  
8I5 C5  C4  SING N N 6  
8I5 C5  O5  SING N N 7  
8I5 C4  C3  SING N N 8  
8I5 C8  C9  SING N N 9  
8I5 C8  C7  SING N N 10 
8I5 C9  C10 SING N N 11 
8I5 O5  C1  SING N N 12 
8I5 C3  O3  SING N N 13 
8I5 C3  C2  SING N N 14 
8I5 C10 O1  SING N N 15 
8I5 C10 C11 SING N N 16 
8I5 O1  C1  SING N N 17 
8I5 N7  C7  SING N N 18 
8I5 C1  C2  SING N N 19 
8I5 C7  C12 SING N N 20 
8I5 C2  N2  SING N N 21 
8I5 C12 C11 SING N N 22 
8I5 C12 O12 SING N N 23 
8I5 C11 O11 SING N N 24 
8I5 O11 C13 SING N N 25 
8I5 O17 C17 SING N N 26 
8I5 C13 O16 SING N N 27 
8I5 C13 C14 SING N N 28 
8I5 O16 C16 SING N N 29 
8I5 C16 C17 SING N N 30 
8I5 C16 C15 SING N N 31 
8I5 N23 C19 SING N N 32 
8I5 C19 C20 SING N N 33 
8I5 C19 C18 SING N N 34 
8I5 C14 C15 SING N N 35 
8I5 C14 O14 SING N N 36 
8I5 O20 C20 SING N N 37 
8I5 O18 C15 SING N N 38 
8I5 O18 C18 SING N N 39 
8I5 C20 C21 SING N N 40 
8I5 C18 O22 SING N N 41 
8I5 C23 N19 SING N N 42 
8I5 C23 C22 SING N N 43 
8I5 C21 O21 SING N N 44 
8I5 C21 C22 SING N N 45 
8I5 O22 C22 SING N N 46 
8I5 C6  H1  SING N N 47 
8I5 C6  H2  SING N N 48 
8I5 C14 H3  SING N N 49 
8I5 C15 H4  SING N N 50 
8I5 C16 H5  SING N N 51 
8I5 C10 H6  SING N N 52 
8I5 C12 H7  SING N N 53 
8I5 C13 H8  SING N N 54 
8I5 CH3 H9  SING N N 55 
8I5 CH3 H10 SING N N 56 
8I5 CH3 H11 SING N N 57 
8I5 C1  H12 SING N N 58 
8I5 C11 H13 SING N N 59 
8I5 C17 H14 SING N N 60 
8I5 C17 H15 SING N N 61 
8I5 C18 H16 SING N N 62 
8I5 C19 H17 SING N N 63 
8I5 C2  H18 SING N N 64 
8I5 C20 H19 SING N N 65 
8I5 C21 H20 SING N N 66 
8I5 C22 H21 SING N N 67 
8I5 C23 H22 SING N N 68 
8I5 C23 H23 SING N N 69 
8I5 C3  H24 SING N N 70 
8I5 C4  H25 SING N N 71 
8I5 C5  H26 SING N N 72 
8I5 C7  H27 SING N N 73 
8I5 C8  H28 SING N N 74 
8I5 C8  H29 SING N N 75 
8I5 C9  H30 SING N N 76 
8I5 N19 H31 SING N N 77 
8I5 N19 H32 SING N N 78 
8I5 N2  H34 SING N N 79 
8I5 N2  H35 SING N N 80 
8I5 N23 H37 SING N N 81 
8I5 N23 H38 SING N N 82 
8I5 N6  H40 SING N N 83 
8I5 N6  H41 SING N N 84 
8I5 N7  H43 SING N N 85 
8I5 N7  H44 SING N N 86 
8I5 N9  H46 SING N N 87 
8I5 O12 H48 SING N N 88 
8I5 O14 H49 SING N N 89 
8I5 O17 H50 SING N N 90 
8I5 O20 H51 SING N N 91 
8I5 O21 H52 SING N N 92 
8I5 O3  H53 SING N N 93 
8I5 O4  H54 SING N N 94 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
8I5 InChI            InChI                1.06  "InChI=1S/C24H48N6O13/c1-30-7-2-6(27)13(32)21(19(7)41-22-11(28)16(35)14(33)8(3-25)38-22)43-24-18(37)20(10(5-31)40-24)42-23-12(29)17(36)15(34)9(4-26)39-23/h6-24,30-37H,2-5,25-29H2,1H3/t6-,7+,8-,9+,10+,11+,12+,13+,14-,15-,16-,17-,18-,19-,20+,21-,22-,23-,24+/m1/s1" 
8I5 InChIKey         InChI                1.06  FCJYTWXMZQXWFB-HGRVKHENSA-N                                                                                                                                                                                                                                            
8I5 SMILES_CANONICAL CACTVS               3.385 "CN[C@H]1C[C@@H](N)[C@H](O)[C@@H](O[C@@H]2O[C@@H](CO)[C@H](O[C@H]3O[C@@H](CN)[C@@H](O)[C@H](O)[C@@H]3N)[C@H]2O)[C@@H]1O[C@H]4O[C@H](CN)[C@@H](O)[C@H](O)[C@@H]4N"                                                                                                      
8I5 SMILES           CACTVS               3.385 "CN[CH]1C[CH](N)[CH](O)[CH](O[CH]2O[CH](CO)[CH](O[CH]3O[CH](CN)[CH](O)[CH](O)[CH]3N)[CH]2O)[CH]1O[CH]4O[CH](CN)[CH](O)[CH](O)[CH]4N"                                                                                                                                   
8I5 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CN[C@H]1C[C@H]([C@@H]([C@H]([C@@H]1O[C@@H]2[C@H]([C@H]([C@@H]([C@H](O2)CN)O)O)N)O[C@H]3[C@@H]([C@H]([C@@H](O3)CO)O[C@@H]4[C@H]([C@H]([C@@H]([C@@H](O4)CN)O)O)N)O)O)N"                                                                                                 
8I5 SMILES           "OpenEye OEToolkits" 2.0.7 "CNC1CC(C(C(C1OC2C(C(C(C(O2)CN)O)O)N)OC3C(C(C(O3)CO)OC4C(C(C(C(O4)CN)O)O)N)O)O)N"                                                                                                                                                                                      
# 
_pdbx_chem_comp_identifier.comp_id           8I5 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   2.0.7 
_pdbx_chem_comp_identifier.identifier        "(2~{R},3~{S},4~{R},5~{S},6~{R})-2-(aminomethyl)-6-[(1~{R},2~{R},3~{S},4~{R},6~{S})-2-[(2~{S},3~{R},4~{R},5~{S})-4-[(2~{R},3~{S},4~{R},5~{S},6~{S})-6-(aminomethyl)-3-azanyl-4,5-bis(oxidanyl)oxan-2-yl]oxy-5-(hydroxymethyl)-3-oxidanyl-oxolan-2-yl]oxy-4-azanyl-6-(methylamino)-3-oxidanyl-cyclohexyl]oxy-5-azanyl-oxane-3,4-diol" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
8I5 "Create component"  2021-10-19 PDBE 
8I5 "Modify descriptor" 2022-08-22 RCSB 
8I5 "Initial release"   2022-11-02 RCSB 
# 
