data_7Y5
# 
_chem_comp.id                                    7Y5 
_chem_comp.name                                  Selatogrel 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C28 H39 N6 O8 P" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         "[(2~{R})-3-(4-butoxycarbonylpiperazin-1-yl)-2-[[6-[(3~{S})-3-methoxypyrrolidin-1-yl]-2-phenyl-pyrimidin-4-yl]carbonylamino]-3-oxidanylidene-propyl]phosphonic acid; [(2R)-3-(4-butoxycarbonylpiperazin-1-yl)-2-[[6-[(3S)-3-methoxypyrrolidin-1-yl]-2-phenyl-pyrimidin-4-yl]carbonylamino]-3-oxidanylidene-propyl]phosphonic acid; 4-((R)-2-((6-((S)-3-Methoxypyrrolidin-1-yl)-2-phenylpyrimidine-4-carbonyl)amino)-3-phosphonopropionyl)piperazine-1-carboxylic acid butyl ester" 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2021-09-14 
_chem_comp.pdbx_modified_date                    2022-10-28 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        618.618 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     7Y5 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        7PP1 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBE 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
7Y5 N1  N1  N 0 1 N N N -24.649 23.570 32.221 -5.642  0.130  -1.309 N1  7Y5 1  
7Y5 N3  N2  N 0 1 N N N -23.073 27.140 27.034 0.190   0.201  0.414  N3  7Y5 2  
7Y5 C4  C1  C 0 1 N N N -25.719 20.977 34.350 -9.047  -1.132 -1.075 C4  7Y5 3  
7Y5 C5  C2  C 0 1 N N N -25.418 23.014 33.186 -6.977  0.000  -1.440 C5  7Y5 4  
7Y5 C6  C3  C 0 1 N N N -23.874 22.786 31.248 -4.941  1.278  -1.900 C6  7Y5 5  
7Y5 C7  C4  C 0 1 N N N -24.061 23.292 29.843 -4.147  1.989  -0.797 C7  7Y5 6  
7Y5 C8  C5  C 0 1 N N N -24.487 25.024 32.094 -4.863  -0.870 -0.566 C8  7Y5 7  
7Y5 C10 C6  C 0 1 N N N -23.244 25.262 28.667 -2.032  1.116  0.074  C10 7Y5 8  
7Y5 C13 C7  C 0 1 N N N -22.360 28.258 27.053 1.014   -0.864 0.387  C13 7Y5 9  
7Y5 C15 C8  C 0 1 Y N N -21.690 28.549 23.458 4.145   0.651  -0.782 C15 7Y5 10 
7Y5 C17 C9  C 0 1 Y N N -21.575 28.201 20.943 3.750   3.090  -1.119 C17 7Y5 11 
7Y5 C20 C10 C 0 1 Y N N -23.394 26.116 21.055 6.374   3.448  -1.941 C20 7Y5 12 
7Y5 C21 C11 C 0 1 Y N N -23.015 26.770 22.225 5.940   2.190  -1.576 C21 7Y5 13 
7Y5 C22 C12 C 0 1 Y N N -20.582 30.287 24.489 4.605   -1.591 -0.489 C22 7Y5 14 
7Y5 C24 C13 C 0 1 N N N -19.033 33.592 24.876 7.166   -3.211 1.139  C24 7Y5 15 
7Y5 C26 C14 C 0 1 N N S -18.564 33.189 23.517 7.839   -3.090 -0.254 C26 7Y5 16 
7Y5 C28 C15 C 0 1 Y N N -21.040 29.854 25.725 3.284   -1.795 -0.075 C28 7Y5 17 
7Y5 C1  C16 C 0 1 N N N -23.430 18.027 34.137 -11.633 -3.729 0.104  C1  7Y5 18 
7Y5 C2  C17 C 0 1 N N N -24.626 18.829 33.810 -11.098 -2.470 -0.581 C2  7Y5 19 
7Y5 C3  C18 C 0 1 N N N -24.563 20.085 34.604 -9.582  -2.391 -0.390 C3  7Y5 20 
7Y5 O1  O1  O 0 1 N N N -25.403 21.674 33.121 -7.608  -1.056 -0.894 O1  7Y5 21 
7Y5 C9  C19 C 0 1 N N N -24.663 25.481 30.677 -4.070  -0.155 0.535  C9  7Y5 22 
7Y5 N2  N3  N 0 1 N N N -23.775 24.726 29.786 -3.367  0.985  -0.059 N2  7Y5 23 
7Y5 C11 C20 C 0 1 N N R -23.674 26.667 28.258 -1.230  0.022  0.730  C11 7Y5 24 
7Y5 C12 C21 C 0 1 N N N -25.192 26.735 28.082 -1.427  0.085  2.246  C12 7Y5 25 
7Y5 P1  P1  P 0 1 N N N -25.854 28.413 28.135 -1.026  1.760  2.842  P1  7Y5 26 
7Y5 O2  O2  O 0 1 N N N -27.304 28.340 27.665 0.509   2.100  2.496  O2  7Y5 27 
7Y5 O3  O3  O 0 1 N N N -25.002 29.258 27.197 -1.911  2.744  2.181  O3  7Y5 28 
7Y5 O4  O4  O 0 1 N N N -25.745 28.881 29.578 -1.244  1.829  4.436  O4  7Y5 29 
7Y5 C14 C22 C 0 1 Y N N -21.826 28.730 25.735 2.425   -0.701 -0.044 C14 7Y5 30 
7Y5 N4  N4  N 0 1 Y N N -22.184 28.074 24.622 2.889   0.496  -0.396 N4  7Y5 31 
7Y5 C16 C23 C 0 1 Y N N -22.085 27.823 22.193 4.621   2.003  -1.166 C16 7Y5 32 
7Y5 C18 C24 C 0 1 Y N N -21.966 27.538 19.777 4.197   4.345  -1.482 C18 7Y5 33 
7Y5 C19 C25 C 0 1 Y N N -22.866 26.499 19.835 5.506   4.524  -1.893 C19 7Y5 34 
7Y5 N5  N5  N 0 1 Y N N -20.896 29.646 23.340 4.993   -0.368 -0.830 N5  7Y5 35 
7Y5 N6  N6  N 0 1 N N N -19.784 31.412 24.374 5.498   -2.649 -0.536 N6  7Y5 36 
7Y5 C23 C26 C 0 1 N N N -19.439 32.271 25.520 5.662   -3.262 0.795  C23 7Y5 37 
7Y5 C25 C27 C 0 1 N N N -19.619 32.165 23.132 6.823   -2.203 -1.016 C25 7Y5 38 
7Y5 O5  O5  O 0 1 N N N -18.369 34.215 22.540 9.110   -2.444 -0.154 O5  7Y5 39 
7Y5 C27 C28 C 0 1 N N N -17.004 34.361 22.133 10.206  -3.342 0.031  C27 7Y5 40 
7Y5 O6  O6  O 0 1 N N N -22.174 28.903 28.084 0.602   -1.959 0.715  O6  7Y5 41 
7Y5 O7  O7  O 0 1 N N N -22.440 24.654 27.986 -1.477  2.114  -0.335 O7  7Y5 42 
7Y5 O8  O8  O 0 1 N N N -26.047 23.650 33.995 -7.612  0.836  -2.052 O8  7Y5 43 
7Y5 H1  H1  H 0 1 N N N -23.193 26.631 26.182 0.536   1.087  0.225  H1  7Y5 44 
7Y5 H2  H2  H 0 1 N N N -25.843 21.692 35.177 -9.277  -1.172 -2.140 H2  7Y5 45 
7Y5 H3  H3  H 0 1 N N N -26.641 20.389 34.233 -9.515  -0.251 -0.635 H3  7Y5 46 
7Y5 H4  H4  H 0 1 N N N -24.202 21.737 31.295 -4.258  0.930  -2.675 H4  7Y5 47 
7Y5 H5  H5  H 0 1 N N N -22.807 22.849 31.510 -5.666  1.967  -2.333 H5  7Y5 48 
7Y5 H6  H6  H 0 1 N N N -25.100 23.115 29.527 -3.474  2.720  -1.243 H6  7Y5 49 
7Y5 H7  H7  H 0 1 N N N -23.376 22.757 29.169 -4.835  2.493  -0.117 H7  7Y5 50 
7Y5 H8  H8  H 0 1 N N N -23.479 25.301 32.435 -5.537  -1.599 -0.116 H8  7Y5 51 
7Y5 H9  H9  H 0 1 N N N -25.238 25.523 32.725 -4.177  -1.377 -1.245 H9  7Y5 52 
7Y5 H10 H10 H 0 1 N N N -20.870 29.016 20.880 2.727   2.951  -0.803 H10 7Y5 53 
7Y5 H11 H11 H 0 1 N N N -24.105 25.304 21.101 7.396   3.594  -2.258 H11 7Y5 54 
7Y5 H12 H12 H 0 1 N N N -23.441 26.464 23.169 6.621   1.352  -1.607 H12 7Y5 55 
7Y5 H13 H13 H 0 1 N N N -18.224 34.074 25.444 7.478   -4.128 1.639  H13 7Y5 56 
7Y5 H14 H14 H 0 1 N N N -19.891 34.276 24.809 7.391   -2.341 1.755  H14 7Y5 57 
7Y5 H15 H15 H 0 1 N N N -17.615 32.647 23.642 7.937   -4.067 -0.727 H15 7Y5 58 
7Y5 H16 H16 H 0 1 N N N -20.790 30.377 26.636 2.939   -2.778 0.209  H16 7Y5 59 
7Y5 H17 H17 H 0 1 N N N -23.449 17.089 33.563 -11.165 -4.609 -0.336 H17 7Y5 60 
7Y5 H18 H18 H 0 1 N N N -22.525 18.597 33.879 -11.403 -3.689 1.169  H18 7Y5 61 
7Y5 H19 H19 H 0 1 N N N -23.425 17.798 35.213 -12.713 -3.785 -0.032 H19 7Y5 62 
7Y5 H20 H20 H 0 1 N N N -24.635 19.066 32.736 -11.328 -2.510 -1.646 H20 7Y5 63 
7Y5 H21 H21 H 0 1 N N N -25.535 18.267 34.070 -11.566 -1.590 -0.141 H21 7Y5 64 
7Y5 H22 H22 H 0 1 N N N -24.546 19.826 35.673 -9.114  -3.271 -0.830 H22 7Y5 65 
7Y5 H23 H23 H 0 1 N N N -23.639 20.622 34.342 -9.352  -2.351 0.675  H23 7Y5 66 
7Y5 H24 H24 H 0 1 N N N -24.421 26.552 30.608 -4.752  0.197  1.308  H24 7Y5 67 
7Y5 H25 H25 H 0 1 N N N -25.707 25.320 30.371 -3.347  -0.844 0.971  H25 7Y5 68 
7Y5 H26 H26 H 0 1 N N N -23.401 27.352 29.074 -1.565  -0.947 0.360  H26 7Y5 69 
7Y5 H27 H27 H 0 1 N N N -25.661 26.151 28.887 -2.464  -0.149 2.487  H27 7Y5 70 
7Y5 H28 H28 H 0 1 N N N -25.449 26.291 27.109 -0.770  -0.640 2.728  H28 7Y5 71 
7Y5 H29 H29 H 0 1 N N N -27.404 28.842 26.865 1.147   1.494  2.898  H29 7Y5 72 
7Y5 H30 H30 H 0 1 N N N -25.156 29.625 29.626 -1.049  2.693  4.823  H30 7Y5 73 
7Y5 H31 H31 H 0 1 N N N -21.559 27.843 18.824 3.523   5.188  -1.445 H31 7Y5 74 
7Y5 H32 H32 H 0 1 N N N -23.159 25.984 18.932 5.851   5.507  -2.176 H32 7Y5 75 
7Y5 H33 H33 H 0 1 N N N -20.307 32.408 26.182 5.322   -4.297 0.771  H33 7Y5 76 
7Y5 H34 H34 H 0 1 N N N -18.604 31.842 26.094 5.094   -2.699 1.535  H34 7Y5 77 
7Y5 H35 H35 H 0 1 N N N -20.559 32.653 22.833 6.981   -1.152 -0.774 H35 7Y5 78 
7Y5 H36 H36 H 0 1 N N N -19.267 31.517 22.316 6.911   -2.363 -2.091 H36 7Y5 79 
7Y5 H37 H37 H 0 1 N N N -16.928 35.163 21.384 11.134  -2.774 0.098  H37 7Y5 80 
7Y5 H38 H38 H 0 1 N N N -16.386 34.615 23.007 10.059  -3.909 0.951  H38 7Y5 81 
7Y5 H39 H39 H 0 1 N N N -16.649 33.416 21.695 10.259  -4.029 -0.814 H39 7Y5 82 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
7Y5 C18 C19 DOUB Y N 1  
7Y5 C18 C17 SING Y N 2  
7Y5 C19 C20 SING Y N 3  
7Y5 C17 C16 DOUB Y N 4  
7Y5 C20 C21 DOUB Y N 5  
7Y5 C27 O5  SING N N 6  
7Y5 C16 C21 SING Y N 7  
7Y5 C16 C15 SING N N 8  
7Y5 O5  C26 SING N N 9  
7Y5 C25 C26 SING N N 10 
7Y5 C25 N6  SING N N 11 
7Y5 N5  C15 DOUB Y N 12 
7Y5 N5  C22 SING Y N 13 
7Y5 C15 N4  SING Y N 14 
7Y5 C26 C24 SING N N 15 
7Y5 N6  C22 SING N N 16 
7Y5 N6  C23 SING N N 17 
7Y5 C22 C28 DOUB Y N 18 
7Y5 N4  C14 DOUB Y N 19 
7Y5 C24 C23 SING N N 20 
7Y5 C28 C14 SING Y N 21 
7Y5 C14 C13 SING N N 22 
7Y5 N3  C13 SING N N 23 
7Y5 N3  C11 SING N N 24 
7Y5 C13 O6  DOUB N N 25 
7Y5 O3  P1  DOUB N N 26 
7Y5 O2  P1  SING N N 27 
7Y5 O7  C10 DOUB N N 28 
7Y5 C12 P1  SING N N 29 
7Y5 C12 C11 SING N N 30 
7Y5 P1  O4  SING N N 31 
7Y5 C11 C10 SING N N 32 
7Y5 C10 N2  SING N N 33 
7Y5 N2  C7  SING N N 34 
7Y5 N2  C9  SING N N 35 
7Y5 C7  C6  SING N N 36 
7Y5 C9  C8  SING N N 37 
7Y5 C6  N1  SING N N 38 
7Y5 C8  N1  SING N N 39 
7Y5 N1  C5  SING N N 40 
7Y5 O1  C5  SING N N 41 
7Y5 O1  C4  SING N N 42 
7Y5 C5  O8  DOUB N N 43 
7Y5 C2  C1  SING N N 44 
7Y5 C2  C3  SING N N 45 
7Y5 C4  C3  SING N N 46 
7Y5 N3  H1  SING N N 47 
7Y5 C4  H2  SING N N 48 
7Y5 C4  H3  SING N N 49 
7Y5 C6  H4  SING N N 50 
7Y5 C6  H5  SING N N 51 
7Y5 C7  H6  SING N N 52 
7Y5 C7  H7  SING N N 53 
7Y5 C8  H8  SING N N 54 
7Y5 C8  H9  SING N N 55 
7Y5 C17 H10 SING N N 56 
7Y5 C20 H11 SING N N 57 
7Y5 C21 H12 SING N N 58 
7Y5 C24 H13 SING N N 59 
7Y5 C24 H14 SING N N 60 
7Y5 C26 H15 SING N N 61 
7Y5 C28 H16 SING N N 62 
7Y5 C1  H17 SING N N 63 
7Y5 C1  H18 SING N N 64 
7Y5 C1  H19 SING N N 65 
7Y5 C2  H20 SING N N 66 
7Y5 C2  H21 SING N N 67 
7Y5 C3  H22 SING N N 68 
7Y5 C3  H23 SING N N 69 
7Y5 C9  H24 SING N N 70 
7Y5 C9  H25 SING N N 71 
7Y5 C11 H26 SING N N 72 
7Y5 C12 H27 SING N N 73 
7Y5 C12 H28 SING N N 74 
7Y5 O2  H29 SING N N 75 
7Y5 O4  H30 SING N N 76 
7Y5 C18 H31 SING N N 77 
7Y5 C19 H32 SING N N 78 
7Y5 C23 H33 SING N N 79 
7Y5 C23 H34 SING N N 80 
7Y5 C25 H35 SING N N 81 
7Y5 C25 H36 SING N N 82 
7Y5 C27 H37 SING N N 83 
7Y5 C27 H38 SING N N 84 
7Y5 C27 H39 SING N N 85 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
7Y5 InChI            InChI                1.06  "InChI=1S/C28H39N6O8P/c1-3-4-16-42-28(37)33-14-12-32(13-15-33)27(36)23(19-43(38,39)40)30-26(35)22-17-24(34-11-10-21(18-34)41-2)31-25(29-22)20-8-6-5-7-9-20/h5-9,17,21,23H,3-4,10-16,18-19H2,1-2H3,(H,30,35)(H2,38,39,40)/t21-,23-/m0/s1" 
7Y5 InChIKey         InChI                1.06  FYXHWMQPCJOJCH-GMAHTHKFSA-N                                                                                                                                                                                                              
7Y5 SMILES_CANONICAL CACTVS               3.385 "CCCCOC(=O)N1CCN(CC1)C(=O)[C@H](C[P](O)(O)=O)NC(=O)c2cc(nc(n2)c3ccccc3)N4CC[C@@H](C4)OC"                                                                                                                                                 
7Y5 SMILES           CACTVS               3.385 "CCCCOC(=O)N1CCN(CC1)C(=O)[CH](C[P](O)(O)=O)NC(=O)c2cc(nc(n2)c3ccccc3)N4CC[CH](C4)OC"                                                                                                                                                    
7Y5 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CCCCOC(=O)N1CCN(CC1)C(=O)[C@H](CP(=O)(O)O)NC(=O)c2cc(nc(n2)c3ccccc3)N4CC[C@@H](C4)OC"                                                                                                                                                   
7Y5 SMILES           "OpenEye OEToolkits" 2.0.7 "CCCCOC(=O)N1CCN(CC1)C(=O)C(CP(=O)(O)O)NC(=O)c2cc(nc(n2)c3ccccc3)N4CCC(C4)OC"                                                                                                                                                            
# 
_pdbx_chem_comp_identifier.comp_id           7Y5 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   2.0.7 
_pdbx_chem_comp_identifier.identifier        "[(2~{R})-3-(4-butoxycarbonylpiperazin-1-yl)-2-[[6-[(3~{S})-3-methoxypyrrolidin-1-yl]-2-phenyl-pyrimidin-4-yl]carbonylamino]-3-oxidanylidene-propyl]phosphonic acid" 
# 
loop_
_pdbx_chem_comp_synonyms.ordinal 
_pdbx_chem_comp_synonyms.comp_id 
_pdbx_chem_comp_synonyms.name 
_pdbx_chem_comp_synonyms.provenance 
_pdbx_chem_comp_synonyms.type 
1 7Y5 "[(2~{R})-3-(4-butoxycarbonylpiperazin-1-yl)-2-[[6-[(3~{S})-3-methoxypyrrolidin-1-yl]-2-phenyl-pyrimidin-4-yl]carbonylamino]-3-oxidanylidene-propyl]phosphonic acid" PDB     ? 
2 7Y5 "[(2R)-3-(4-butoxycarbonylpiperazin-1-yl)-2-[[6-[(3S)-3-methoxypyrrolidin-1-yl]-2-phenyl-pyrimidin-4-yl]carbonylamino]-3-oxidanylidene-propyl]phosphonic acid"       PUBCHEM ? 
3 7Y5 "4-((R)-2-((6-((S)-3-Methoxypyrrolidin-1-yl)-2-phenylpyrimidine-4-carbonyl)amino)-3-phosphonopropionyl)piperazine-1-carboxylic acid butyl ester"                     PUBCHEM ? 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
7Y5 "Create component"  2021-09-14 PDBE 
7Y5 "Modify descriptor" 2022-08-22 RCSB 
7Y5 "Initial release"   2022-11-02 RCSB 
# 
