data_7V5
#

_chem_comp.id                                   7V5
_chem_comp.name                                 "~{N}-(5~{H}-indolo[3,2-b]quinolin-11-yl)-~{N}',~{N}'-dimethyl-propane-1,3-diamine"
_chem_comp.type                                 non-polymer
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C20 H24 N4"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        ?
_chem_comp.pdbx_formal_charge                   2
_chem_comp.pdbx_initial_date                    2021-09-07
_chem_comp.pdbx_modified_date                   2021-12-24
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       320.431
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    7V5
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       7PNG
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 PDBE
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
7V5  C4      C1   C  0  1  Y  N  N  32.159  37.895  30.636   2.042  -3.698  -0.471  C4      7V5   1  
7V5  C6      C2   C  0  1  Y  N  N  30.868  32.625  30.072   4.421   1.394  -0.553  C6      7V5   2  
7V5  C7      C3   C  0  1  Y  N  N  30.544  31.259  29.926   4.886   2.691  -0.529  C7      7V5   3  
7V5  C8      C4   C  0  1  Y  N  N  31.516  30.316  29.521   4.056   3.723  -0.119  C8      7V5   4  
7V5  C3      C5   C  0  1  Y  N  N  32.941  39.054  30.738   1.111  -4.676  -0.302  C3      7V5   5  
7V5  C4A     C6   C  0  1  Y  N  N  32.742  36.654  30.327   1.712  -2.361  -0.182  C4A     7V5   6  
7V5  N5      N1   N  1  1  Y  N  N  32.065  35.428  30.239   2.610  -1.387  -0.342  N5      7V5   7  
7V5  C5A     C7   C  0  1  Y  N  N  32.776  34.300  29.902   2.321  -0.122  -0.076  C5A     7V5   8  
7V5  C6A     C8   C  0  1  Y  N  N  32.197  33.024  29.817   3.111   1.122  -0.164  C6A     7V5   9  
7V5  C9      C9   C  0  1  Y  N  N  32.843  30.717  29.259   2.759   3.468   0.269  C9      7V5  10  
7V5  C9A     C10  C  0  1  Y  N  N  33.180  32.065  29.423   2.270   2.164   0.251  C9A     7V5  11  
7V5  N10     N2   N  0  1  Y  N  N  34.347  32.834  29.298   1.038   1.630   0.579  N10     7V5  12  
7V5  C10A    C11  C  0  0  Y  N  N  34.094  34.166  29.610   1.047   0.255   0.389  C10A    7V5  13  
7V5  C11A    C12  C  0  0  Y  N  N  34.891  35.321  29.699   0.071  -0.719   0.574  C11A    7V5  14  
7V5  N11     N3   N  0  1  N  N  N  36.278  35.314  29.465  -1.196  -0.383   1.031  N11     7V5  15  
7V5  "C1'"   C13  C  0  1  N  N  N  37.069  34.130  29.101  -2.056   0.056  -0.076  "C1'"   7V5  16  
7V5  "C2'"   C14  C  0  1  N  N  N  38.556  34.463  28.967  -3.475   0.295   0.443  "C2'"   7V5  17  
7V5  "C3'"   C15  C  0  1  N  N  N  39.289  33.233  28.410  -4.370   0.753  -0.710  "C3'"   7V5  18  
7V5  "N4'"   N4   N  1  1  N  N  N  40.734  33.461  28.179  -5.733   0.982  -0.211  "N4'"   7V5  19  
7V5  "C5'A"  C16  C  0  0  N  N  N  41.452  33.512  29.471  -5.724   2.101   0.742  "C5'A"  7V5  20  
7V5  "C5'X"  C17  C  0  0  N  N  N  41.264  32.309  27.419  -6.618   1.306  -1.337  "C5'X"  7V5  21  
7V5  C1A     C18  C  0  1  Y  N  N  34.181  36.548  30.076   0.407  -2.060   0.282  C1A     7V5  22  
7V5  C1      C19  C  0  1  Y  N  N  34.935  37.747  30.215  -0.527  -3.094   0.445  C1      7V5  23  
7V5  C2      C20  C  0  1  Y  N  N  34.325  38.972  30.542  -0.173  -4.376   0.149  C2      7V5  24  
7V5  H4      H1   H  0  1  N  N  N  31.093  37.957  30.797   3.032  -3.948  -0.822  H4      7V5  25  
7V5  H6      H2   H  0  1  N  N  N  30.120  33.344  30.370   5.069   0.592  -0.873  H6      7V5  26  
7V5  H7      H3   H  0  1  N  N  N  29.536  30.928  30.127   5.901   2.904  -0.830  H7      7V5  27  
7V5  H8      H4   H  0  1  N  N  N  31.240  29.278  29.411   4.430   4.737  -0.104  H8      7V5  28  
7V5  H3      H5   H  0  1  N  N  N  32.479  40.003  30.966   1.371  -5.701  -0.521  H3      7V5  29  
7V5  H5      H6   H  0  1  N  N  N  31.083  35.375  30.418   3.499  -1.611  -0.660  H5      7V5  30  
7V5  H9      H7   H  0  1  N  N  N  33.583  29.999  28.939   2.121   4.279   0.587  H9      7V5  31  
7V5  H11     H8   H  0  1  N  N  N  36.691  35.661  30.307  -1.146   0.321   1.752  H11     7V5  32  
7V5  "H1'A"  H9   H  0  0  N  N  N  36.703  33.738  28.140  -1.662   0.982  -0.496  "H1'A"  7V5  33  
7V5  "H1'B"  H10  H  0  0  N  N  N  36.944  33.364  29.881  -2.076  -0.713  -0.848  "H1'B"  7V5  34  
7V5  "H2'A"  H11  H  0  0  N  N  N  38.967  34.723  29.953  -3.869  -0.631   0.863  "H2'A"  7V5  35  
7V5  "H2'B"  H12  H  0  0  N  N  N  38.684  35.313  28.280  -3.455   1.064   1.215  "H2'B"  7V5  36  
7V5  "H3'A"  H13  H  0  0  N  N  N  38.823  32.954  27.453  -3.976   1.679  -1.130  "H3'A"  7V5  37  
7V5  "H3'B"  H14  H  0  0  N  N  N  39.177  32.407  29.127  -4.390  -0.016  -1.482  "H3'B"  7V5  38  
7V5  "H5'A"  H16  H  0  0  N  N  N  41.081  34.361  30.064  -5.363   3.000   0.243  "H5'A"  7V5  39  
7V5  "H5'C"  H17  H  0  0  N  N  N  41.280  32.576  30.023  -6.735   2.271   1.112  "H5'C"  7V5  40  
7V5  "H5'B"  H18  H  0  0  N  N  N  42.529  33.637  29.287  -5.066   1.860   1.577  "H5'B"  7V5  41  
7V5  H5XA    H19  H  0  0  N  N  N  42.339  32.454  27.234  -6.625   0.476  -2.045  H5XA    7V5  42  
7V5  H5XC    H20  H  0  0  N  N  N  41.113  31.387  27.999  -7.629   1.476  -0.967  H5XC    7V5  43  
7V5  H5XB    H21  H  0  0  N  N  N  40.734  32.229  26.458  -6.258   2.205  -1.837  H5XB    7V5  44  
7V5  H1      H22  H  0  1  N  N  N  36.004  37.716  30.065  -1.523  -2.875   0.800  H1      7V5  45  
7V5  H2      H23  H  0  1  N  N  N  34.932  39.860  30.643  -0.893  -5.170   0.275  H2      7V5  46  
7V5  H10     H25  H  0  1  N  N  N  40.875  34.309  27.669  -6.066   0.150   0.251  H10     7V5  47  
7V5  H12     H24  H  0  1  N  N  N  35.238  32.474  29.022   0.277   2.142   0.896  H12     7V5  48  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
7V5  "C5'X"  "N4'"   SING  N  N   1  
7V5  "N4'"   "C3'"   SING  N  N   2  
7V5  "N4'"   "C5'A"  SING  N  N   3  
7V5  "C3'"   "C2'"   SING  N  N   4  
7V5  "C2'"   "C1'"   SING  N  N   5  
7V5  "C1'"   N11     SING  N  N   6  
7V5  C9      C9A     SING  Y  N   7  
7V5  C9      C8      DOUB  Y  N   8  
7V5  N10     C9A     SING  Y  N   9  
7V5  N10     C10A    SING  Y  N  10  
7V5  C9A     C6A     DOUB  Y  N  11  
7V5  N11     C11A    SING  N  N  12  
7V5  C8      C7      SING  Y  N  13  
7V5  C10A    C11A    DOUB  Y  N  14  
7V5  C10A    C5A     SING  Y  N  15  
7V5  C11A    C1A     SING  Y  N  16  
7V5  C6A     C5A     SING  Y  N  17  
7V5  C6A     C6      SING  Y  N  18  
7V5  C5A     N5      DOUB  Y  N  19  
7V5  C7      C6      DOUB  Y  N  20  
7V5  C1A     C1      DOUB  Y  N  21  
7V5  C1A     C4A     SING  Y  N  22  
7V5  C1      C2      SING  Y  N  23  
7V5  N5      C4A     SING  Y  N  24  
7V5  C4A     C4      DOUB  Y  N  25  
7V5  C2      C3      DOUB  Y  N  26  
7V5  C4      C3      SING  Y  N  27  
7V5  C4      H4      SING  N  N  28  
7V5  C6      H6      SING  N  N  29  
7V5  C7      H7      SING  N  N  30  
7V5  C8      H8      SING  N  N  31  
7V5  C3      H3      SING  N  N  32  
7V5  N5      H5      SING  N  N  33  
7V5  C9      H9      SING  N  N  34  
7V5  N11     H11     SING  N  N  35  
7V5  "C1'"   "H1'A"  SING  N  N  36  
7V5  "C1'"   "H1'B"  SING  N  N  37  
7V5  "C2'"   "H2'A"  SING  N  N  38  
7V5  "C2'"   "H2'B"  SING  N  N  39  
7V5  "C3'"   "H3'A"  SING  N  N  40  
7V5  "C3'"   "H3'B"  SING  N  N  41  
7V5  "C5'A"  "H5'A"  SING  N  N  42  
7V5  "C5'A"  "H5'C"  SING  N  N  43  
7V5  "C5'A"  "H5'B"  SING  N  N  44  
7V5  "C5'X"  H5XA    SING  N  N  45  
7V5  "C5'X"  H5XC    SING  N  N  46  
7V5  "C5'X"  H5XB    SING  N  N  47  
7V5  C1      H1      SING  N  N  48  
7V5  C2      H2      SING  N  N  49  
7V5  H10     "N4'"   SING  N  N  50  
7V5  H12     N10     SING  N  N  51  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
7V5  InChI             InChI                 1.03   "InChI=1S/C20H22N4/c1-24(2)13-7-12-21-18-14-8-3-5-10-16(14)22-19-15-9-4-6-11-17(15)23-20(18)19/h3-6,8-11,23H,7,12-13H2,1-2H3,(H,21,22)/p+2"  
7V5  InChIKey          InChI                 1.03   CTDCVGDSVHUYMA-UHFFFAOYSA-P  
7V5  SMILES_CANONICAL  CACTVS                3.385  "C[NH+](C)CCCNc1c2[nH]c3ccccc3c2[nH+]c4ccccc14"  
7V5  SMILES            CACTVS                3.385  "C[NH+](C)CCCNc1c2[nH]c3ccccc3c2[nH+]c4ccccc14"  
7V5  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.7  "C[NH+](C)CCCNc1c2ccccc2[nH+]c3c1[nH]c4c3cccc4"  
7V5  SMILES            "OpenEye OEToolkits"  2.0.7  "C[NH+](C)CCCNc1c2ccccc2[nH+]c3c1[nH]c4c3cccc4"  
#
_pdbx_chem_comp_identifier.comp_id          7V5
_pdbx_chem_comp_identifier.type             "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program          "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version  2.0.7
_pdbx_chem_comp_identifier.identifier       "3-(10~{H}-indolo[3,2-b]quinolin-5-ium-11-ylamino)propyl-dimethyl-azanium"
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
7V5  "Create component"  2021-09-07  PDBE  
7V5  "Initial release"   2021-12-29  RCSB  
##
