data_7D5
#

_chem_comp.id                                   7D5
_chem_comp.name                                 "[(2S,3R,4R)-4-(6-amino-9H-purin-9-yl)-3-(hydroxymethyl)oxetan-2-yl]methyl dihydrogen phosphate"
_chem_comp.type                                 NON-POLYMER
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C10 H14 N5 O6 P"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        "oxetanocin A monophosphate"
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2016-10-07
_chem_comp.pdbx_modified_date                   2021-03-01
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       331.222
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    7D5
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       5TK8
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
7D5  C01  C1   C  0  1  Y  N  N  -8.217  -16.940  -15.685   5.069   1.297   0.242  C01  7D5   1  
7D5  N02  N1   N  0  1  Y  N  N  -7.383  -17.494  -16.557   3.788   1.202   0.526  N02  7D5   2  
7D5  C03  C2   C  0  1  Y  N  N  -6.488  -18.463  -16.155   3.138   0.057   0.347  C03  7D5   3  
7D5  C04  C3   C  0  1  Y  N  N  -6.475  -18.839  -14.802   3.838  -1.055  -0.152  C04  7D5   4  
7D5  C05  C4   C  0  1  Y  N  N  -7.380  -18.206  -13.908   5.205  -0.904  -0.440  C05  7D5   5  
7D5  N06  N2   N  0  1  Y  N  N  -8.224  -17.259  -14.391   5.769   0.281  -0.229  N06  7D5   6  
7D5  N07  N3   N  0  1  N  N  N  -7.393  -18.555  -12.552   5.946  -1.964  -0.932  N07  7D5   7  
7D5  N08  N4   N  0  1  Y  N  N  -5.504  -19.796  -14.667   2.953  -2.078  -0.238  N08  7D5   8  
7D5  C09  C5   C  0  1  Y  N  N  -4.961  -20.007  -15.873   1.784  -1.674   0.166  C09  7D5   9  
7D5  N10  N5   N  0  1  Y  N  N  -5.520  -19.210  -16.786   1.846  -0.364   0.537  N10  7D5  10  
7D5  C11  C6   C  0  1  N  N  R  -5.202  -19.226  -18.144   0.737   0.446   1.047  C11  7D5  11  
7D5  C12  C7   C  0  1  N  N  R  -3.780  -19.350  -18.529  -0.015   1.230  -0.045  C12  7D5  12  
7D5  C13  C8   C  0  1  N  N  S  -4.070  -20.555  -19.195  -1.300   0.784   0.677  C13  7D5  13  
7D5  O14  O1   O  0  1  N  N  N  -5.401  -20.551  -18.591  -0.493  -0.288   1.213  O14  7D5  14  
7D5  C15  C9   C  0  1  N  N  N  -3.187  -21.725  -18.833  -2.410   0.312  -0.264  C15  7D5  15  
7D5  O16  O2   O  0  1  N  N  N  -3.559  -22.810  -19.619  -3.556  -0.067   0.502  O16  7D5  16  
7D5  P17  P1   P  0  1  N  N  N  -2.412  -23.733  -20.230  -4.915  -0.614  -0.166  P17  7D5  17  
7D5  O18  O3   O  0  1  N  N  N  -3.026  -24.733  -21.129  -4.607  -1.775  -1.031  O18  7D5  18  
7D5  O19  O4   O  0  1  N  N  N  -1.674  -24.403  -19.125  -5.938  -1.065   0.993  O19  7D5  19  
7D5  O20  O5   O  0  1  N  N  N  -1.315  -22.903  -21.097  -5.586   0.552  -1.051  O20  7D5  20  
7D5  C29  C10  C  0  1  N  N  N  -3.299  -18.259  -19.536   0.229   2.740  -0.000  C29  7D5  21  
7D5  O30  O6   O  0  1  N  N  N  -4.284  -18.012  -20.478  -0.414   3.360  -1.116  O30  7D5  22  
7D5  H1   H1   H  0  1  N  N  N  -8.919  -16.200  -16.039   5.567   2.244   0.394  H1   7D5  23  
7D5  H2   H2   H  0  1  N  N  N  -8.084  -18.013  -12.074   5.522  -2.823  -1.083  H2   7D5  24  
7D5  H3   H3   H  0  1  N  N  N  -7.610  -19.527  -12.460   6.889  -1.847  -1.127  H3   7D5  25  
7D5  H4   H4   H  0  1  N  N  N  -4.179  -20.723  -16.078   0.895  -2.287   0.202  H4   7D5  26  
7D5  H5   H5   H  0  1  N  N  N  -5.738  -18.472  -18.739   1.011   1.048   1.913  H5   7D5  27  
7D5  H6   H6   H  0  1  N  N  N  -3.100  -19.451  -17.670   0.096   0.810  -1.045  H6   7D5  28  
7D5  H7   H7   H  0  1  N  N  N  -4.122  -20.428  -20.286  -1.651   1.490   1.430  H7   7D5  29  
7D5  H8   H8   H  0  1  N  N  N  -3.316  -21.974  -17.769  -2.679   1.122  -0.943  H8   7D5  30  
7D5  H9   H9   H  0  1  N  N  N  -2.134  -21.470  -19.024  -2.059  -0.544  -0.840  H9   7D5  31  
7D5  H10  H10  H  0  1  N  N  N  -1.747  -25.345  -19.221  -6.780  -1.406   0.663  H10  7D5  32  
7D5  H11  H11  H  0  1  N  N  N  -1.300  -23.232  -21.988  -5.814   1.345  -0.547  H11  7D5  33  
7D5  H12  H12  H  0  1  N  N  N  -2.389  -18.610  -20.045  -0.178   3.147   0.925  H12  7D5  34  
7D5  H13  H13  H  0  1  N  N  N  -3.078  -17.331  -18.989   1.301   2.936  -0.043  H13  7D5  35  
7D5  H14  H14  H  0  1  N  N  N  -3.982  -17.347  -21.086  -0.300   4.320  -1.152  H14  7D5  36  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
7D5  O18  P17  DOUB  N  N   1  
7D5  O20  P17  SING  N  N   2  
7D5  O30  C29  SING  N  N   3  
7D5  P17  O16  SING  N  N   4  
7D5  P17  O19  SING  N  N   5  
7D5  O16  C15  SING  N  N   6  
7D5  C29  C12  SING  N  N   7  
7D5  C13  C15  SING  N  N   8  
7D5  C13  O14  SING  N  N   9  
7D5  C13  C12  SING  N  N  10  
7D5  O14  C11  SING  N  N  11  
7D5  C12  C11  SING  N  N  12  
7D5  C11  N10  SING  N  N  13  
7D5  N10  C03  SING  Y  N  14  
7D5  N10  C09  SING  Y  N  15  
7D5  N02  C03  DOUB  Y  N  16  
7D5  N02  C01  SING  Y  N  17  
7D5  C03  C04  SING  Y  N  18  
7D5  C09  N08  DOUB  Y  N  19  
7D5  C01  N06  DOUB  Y  N  20  
7D5  C04  N08  SING  Y  N  21  
7D5  C04  C05  DOUB  Y  N  22  
7D5  N06  C05  SING  Y  N  23  
7D5  C05  N07  SING  N  N  24  
7D5  C01  H1   SING  N  N  25  
7D5  N07  H2   SING  N  N  26  
7D5  N07  H3   SING  N  N  27  
7D5  C09  H4   SING  N  N  28  
7D5  C11  H5   SING  N  N  29  
7D5  C12  H6   SING  N  N  30  
7D5  C13  H7   SING  N  N  31  
7D5  C15  H8   SING  N  N  32  
7D5  C15  H9   SING  N  N  33  
7D5  O19  H10  SING  N  N  34  
7D5  O20  H11  SING  N  N  35  
7D5  C29  H12  SING  N  N  36  
7D5  C29  H13  SING  N  N  37  
7D5  O30  H14  SING  N  N  38  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
7D5  SMILES            ACDLabs               12.01  "c1nc(c2c(n1)n(cn2)C3C(C(COP(O)(=O)O)O3)CO)N"  
7D5  InChI             InChI                 1.03   "InChI=1S/C10H14N5O6P/c11-8-7-9(13-3-12-8)15(4-14-7)10-5(1-16)6(21-10)2-20-22(17,18)19/h3-6,10,16H,1-2H2,(H2,11,12,13)(H2,17,18,19)/t5-,6-,10-/m1/s1"  
7D5  InChIKey          InChI                 1.03   YHDKOVKCJODYNM-OXOINMOOSA-N  
7D5  SMILES_CANONICAL  CACTVS                3.385  "Nc1ncnc2n(cnc12)[C@@H]3O[C@H](CO[P](O)(O)=O)[C@H]3CO"  
7D5  SMILES            CACTVS                3.385  "Nc1ncnc2n(cnc12)[CH]3O[CH](CO[P](O)(O)=O)[CH]3CO"  
7D5  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.6  "c1nc(c2c(n1)n(cn2)[C@H]3[C@@H]([C@H](O3)COP(=O)(O)O)CO)N"  
7D5  SMILES            "OpenEye OEToolkits"  2.0.6  "c1nc(c2c(n1)n(cn2)C3C(C(O3)COP(=O)(O)O)CO)N"  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
7D5  "SYSTEMATIC NAME"  ACDLabs               12.01  "[(2S,3R,4R)-4-(6-amino-9H-purin-9-yl)-3-(hydroxymethyl)oxetan-2-yl]methyl dihydrogen phosphate"  
7D5  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  2.0.6  "[(2~{S},3~{R},4~{R})-4-(6-aminopurin-9-yl)-3-(hydroxymethyl)oxetan-2-yl]methyl dihydrogen phosphate"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
7D5  "Create component"  2016-10-07  RCSB  
7D5  "Initial release"   2016-11-16  RCSB  
7D5  "Modify synonyms"   2021-03-01  PDBE  
#
_pdbx_chem_comp_synonyms.ordinal     1
_pdbx_chem_comp_synonyms.comp_id     7D5
_pdbx_chem_comp_synonyms.name        "oxetanocin A monophosphate"
_pdbx_chem_comp_synonyms.provenance  ?
_pdbx_chem_comp_synonyms.type        ?
##
