data_6W5
# 
_chem_comp.id                                    6W5 
_chem_comp.name                                  "[(3~{S})-2,2-dimethyl-3-oxidanyl-4-oxidanylidene-4-[[3-oxidanylidene-3-[2-(prop-2-enoylamino)ethylamino]propyl]amino]butyl] dihydrogen phosphate" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C14 H26 N3 O8 P" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2016-07-08 
_chem_comp.pdbx_modified_date                    2024-09-27 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        395.345 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     6W5 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        5KOF 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
_chem_comp.pdbx_pcm                              Y 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
6W5 C13 C1  C 0 1 N N N N N N -5.303 10.113 29.285 -3.697 0.657  0.125  C13 6W5 1  
6W5 C26 C2  C 0 1 N N N N N N -1.361 2.502  24.875 11.531 -1.290 0.377  C26 6W5 2  
6W5 C01 C3  C 0 1 N N N N N N -1.524 3.067  26.055 10.435 -0.615 0.714  C01 6W5 3  
6W5 C02 C4  C 0 1 N N N N N N -0.877 2.423  27.280 9.152  -0.925 0.065  C02 6W5 4  
6W5 N03 N1  N 0 1 N N N N N N -1.720 1.939  28.367 8.042  -0.242 0.407  N03 6W5 5  
6W5 C04 C5  C 0 1 N N N N N N -1.136 1.313  29.545 6.764  -0.551 -0.239 C04 6W5 6  
6W5 C05 C6  C 0 1 N N N N N N -0.424 2.338  30.431 5.673  0.362  0.325  C05 6W5 7  
6W5 N06 N2  N 0 1 N N N N N N -1.398 3.202  31.065 4.395  0.053  -0.321 N06 6W5 8  
6W5 C07 C7  C 0 1 N N N N N N -1.249 4.642  30.960 3.285  0.737  0.021  C07 6W5 9  
6W5 C08 C8  C 0 1 N N N N N N -2.274 5.556  31.628 1.970  0.419  -0.644 C08 6W5 10 
6W5 C09 C9  C 0 1 N N N N N N -3.380 5.942  30.643 0.880  1.332  -0.080 C09 6W5 11 
6W5 N10 N3  N 0 1 N N N N N N -3.283 7.340  30.291 -0.398 1.023  -0.726 N10 6W5 12 
6W5 C11 C10 C 0 1 N N N N N N -4.360 8.236  30.650 -1.509 1.707  -0.384 C11 6W5 13 
6W5 C12 C11 C 0 1 N N S N N N -4.233 9.707  30.296 -2.843 1.313  -0.963 C12 6W5 14 
6W5 C14 C12 C 0 1 N N N N N N -6.613 10.374 29.998 -4.991 0.124  -0.495 C14 6W5 15 
6W5 O15 O1  O 0 1 N N N N N N -6.549 11.436 30.924 -5.788 -0.488 0.521  O15 6W5 16 
6W5 P16 P1  P 0 1 N N N N N N -7.597 11.394 32.202 -7.222 -1.158 0.225  P16 6W5 17 
6W5 O17 O2  O 0 1 N N N N N N -7.805 10.100 32.764 -8.102 -0.168 -0.435 O17 6W5 18 
6W5 C18 C13 C 0 1 N N N N N N -5.472 9.018  28.211 -2.919 -0.500 0.755  C18 6W5 19 
6W5 C19 C14 C 0 1 N N N N N N -4.883 11.423 28.629 -4.035 1.691  1.201  C19 6W5 20 
6W5 O20 O3  O 0 1 N N N N N N -7.680 12.504 33.160 -7.030 -2.433 -0.739 O20 6W5 21 
6W5 O22 O4  O 0 1 N N N N N N -2.982 9.920  29.704 -2.645 0.389  -2.034 O22 6W5 22 
6W5 O23 O5  O 0 1 N N N N N N -5.302 7.833  31.239 -1.434 2.638  0.388  O23 6W5 23 
6W5 O24 O6  O 0 1 N N N N N N -0.341 5.105  30.358 3.344  1.607  0.863  O24 6W5 24 
6W5 O25 O7  O 0 1 N N N N N N 0.302  2.321  27.341 9.093  -1.798 -0.779 O25 6W5 25 
6W5 O1  O8  O 0 1 N Y N N N N -9.013 11.268 31.315 -7.890 -1.630 1.612  O1  6W5 26 
6W5 H1  H1  H 0 1 N N N N N N -0.777 1.598  24.785 11.478 -2.065 -0.373 H1  6W5 27 
6W5 H2  H2  H 0 1 N N N N N N -1.811 2.943  23.998 12.473 -1.062 0.854  H2  6W5 28 
6W5 H3  H3  H 0 1 N N N N N N -2.106 3.971  26.154 10.488 0.160  1.464  H3  6W5 29 
6W5 H4  H4  H 0 1 N N N N N N -2.713 2.038  28.303 8.089  0.454  1.081  H4  6W5 30 
6W5 H5  H5  H 0 1 N N N N N N -1.936 0.832  30.127 6.852  -0.390 -1.314 H5  6W5 31 
6W5 H6  H6  H 0 1 N N N N N N -0.409 0.553  29.222 6.502  -1.591 -0.048 H6  6W5 32 
6W5 H7  H7  H 0 1 N N N N N N 0.155  1.812  31.204 5.585  0.201  1.400  H7  6W5 33 
6W5 H8  H8  H 0 1 N N N N N N 0.255  2.945  29.814 5.935  1.403  0.134  H8  6W5 34 
6W5 H9  H9  H 0 1 N N N N N N -2.166 2.810  31.571 4.348  -0.643 -0.995 H9  6W5 35 
6W5 H10 H10 H 0 1 N N N N N N -1.769 6.468  31.979 2.058  0.580  -1.719 H10 6W5 36 
6W5 H11 H11 H 0 1 N N N N N N -2.721 5.031  32.485 1.708  -0.621 -0.453 H11 6W5 37 
6W5 H12 H12 H 0 1 N N N N N N -4.359 5.753  31.107 0.792  1.171  0.995  H12 6W5 38 
6W5 H13 H13 H 0 1 N N N N N N -3.282 5.332  29.733 1.141  2.372  -0.271 H13 6W5 39 
6W5 H14 H14 H 0 1 N N N N N N -2.480 7.684  29.804 -0.446 0.327  -1.400 H14 6W5 40 
6W5 H15 H15 H 0 1 N N N N N N -4.347 10.312 31.207 -3.353 2.201  -1.338 H15 6W5 41 
6W5 H16 H16 H 0 1 N N N N N N -7.377 10.615 29.244 -5.545 0.949  -0.943 H16 6W5 42 
6W5 H17 H17 H 0 1 N N N N N N -6.904 9.460  30.536 -4.750 -0.612 -1.261 H17 6W5 43 
6W5 H18 H18 H 0 1 N N N N N N -5.775 8.076  28.692 -2.679 -1.236 -0.012 H18 6W5 44 
6W5 H19 H19 H 0 1 N N N N N N -6.244 9.327  27.491 -1.997 -0.121 1.196  H19 6W5 45 
6W5 H20 H20 H 0 1 N N N N N N -4.517 8.870  27.685 -3.527 -0.967 1.529  H20 6W5 46 
6W5 H21 H21 H 0 1 N N N N N N -4.765 12.198 29.400 -4.706 1.245  1.935  H21 6W5 47 
6W5 H22 H22 H 0 1 N N N N N N -3.927 11.280 28.103 -3.118 2.013  1.696  H22 6W5 48 
6W5 H23 H23 H 0 1 N N N N N N -5.654 11.736 27.910 -4.520 2.551  0.739  H23 6W5 49 
6W5 H24 H24 H 0 1 N N N N N N -7.865 12.162 34.027 -6.463 -3.124 -0.370 H24 6W5 50 
6W5 H25 H25 H 0 1 N N N N N N -2.296 9.674  30.314 -2.196 -0.427 -1.772 H25 6W5 51 
6W5 H26 H26 H 0 1 N N N N N N -9.425 10.430 31.492 -8.758 -2.043 1.510  H26 6W5 52 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
6W5 C26 C01 DOUB N N 1  
6W5 C01 C02 SING N N 2  
6W5 C02 O25 DOUB N N 3  
6W5 C02 N03 SING N N 4  
6W5 C18 C13 SING N N 5  
6W5 N03 C04 SING N N 6  
6W5 C19 C13 SING N N 7  
6W5 C13 C14 SING N N 8  
6W5 C13 C12 SING N N 9  
6W5 C04 C05 SING N N 10 
6W5 O22 C12 SING N N 11 
6W5 C14 O15 SING N N 12 
6W5 N10 C09 SING N N 13 
6W5 N10 C11 SING N N 14 
6W5 C12 C11 SING N N 15 
6W5 O24 C07 DOUB N N 16 
6W5 C05 N06 SING N N 17 
6W5 C09 C08 SING N N 18 
6W5 C11 O23 DOUB N N 19 
6W5 O15 P16 SING N N 20 
6W5 C07 N06 SING N N 21 
6W5 C07 C08 SING N N 22 
6W5 P16 O17 DOUB N N 23 
6W5 P16 O20 SING N N 24 
6W5 P16 O1  SING N N 25 
6W5 C26 H1  SING N N 26 
6W5 C26 H2  SING N N 27 
6W5 C01 H3  SING N N 28 
6W5 N03 H4  SING N N 29 
6W5 C04 H5  SING N N 30 
6W5 C04 H6  SING N N 31 
6W5 C05 H7  SING N N 32 
6W5 C05 H8  SING N N 33 
6W5 N06 H9  SING N N 34 
6W5 C08 H10 SING N N 35 
6W5 C08 H11 SING N N 36 
6W5 C09 H12 SING N N 37 
6W5 C09 H13 SING N N 38 
6W5 N10 H14 SING N N 39 
6W5 C12 H15 SING N N 40 
6W5 C14 H16 SING N N 41 
6W5 C14 H17 SING N N 42 
6W5 C18 H18 SING N N 43 
6W5 C18 H19 SING N N 44 
6W5 C18 H20 SING N N 45 
6W5 C19 H21 SING N N 46 
6W5 C19 H22 SING N N 47 
6W5 C19 H23 SING N N 48 
6W5 O20 H24 SING N N 49 
6W5 O22 H25 SING N N 50 
6W5 O1  H26 SING N N 51 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
6W5 InChI            InChI                1.03  "InChI=1S/C14H26N3O8P/c1-4-10(18)15-7-8-16-11(19)5-6-17-13(21)12(20)14(2,3)9-25-26(22,23)24/h4,12,20H,1,5-9H2,2-3H3,(H,15,18)(H,16,19)(H,17,21)(H2,22,23,24)/t12-/m1/s1" 
6W5 InChIKey         InChI                1.03  BHBIKTJIKWGGMD-GFCCVEGCSA-N                                                                                                                                              
6W5 SMILES_CANONICAL CACTVS               3.385 "CC(C)(CO[P](O)(O)=O)[C@H](O)C(=O)NCCC(=O)NCCNC(=O)C=C"                                                                                                                  
6W5 SMILES           CACTVS               3.385 "CC(C)(CO[P](O)(O)=O)[CH](O)C(=O)NCCC(=O)NCCNC(=O)C=C"                                                                                                                   
6W5 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.5 "CC(C)(COP(=O)(O)O)[C@@H](C(=O)NCCC(=O)NCCNC(=O)C=C)O"                                                                                                                   
6W5 SMILES           "OpenEye OEToolkits" 2.0.5 "CC(C)(COP(=O)(O)O)C(C(=O)NCCC(=O)NCCNC(=O)C=C)O"                                                                                                                        
# 
_pdbx_chem_comp_identifier.comp_id           6W5 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   2.0.5 
_pdbx_chem_comp_identifier.identifier        "[(3~{S})-2,2-dimethyl-3-oxidanyl-4-oxidanylidene-4-[[3-oxidanylidene-3-[2-(prop-2-enoylamino)ethylamino]propyl]amino]butyl] dihydrogen phosphate" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
6W5 "Create component" 2016-07-08 RCSB 
6W5 "Initial release"  2018-01-24 RCSB 
6W5 "Modify PCM"       2024-09-27 PDBE 
# 
loop_
_pdbx_chem_comp_pcm.pcm_id 
_pdbx_chem_comp_pcm.comp_id 
_pdbx_chem_comp_pcm.modified_residue_id 
_pdbx_chem_comp_pcm.type 
_pdbx_chem_comp_pcm.category 
_pdbx_chem_comp_pcm.position 
_pdbx_chem_comp_pcm.polypeptide_position 
_pdbx_chem_comp_pcm.comp_id_linking_atom 
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom 
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession 
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession 
1 6W5 CYS None Crosslinker "Amino-acid side chain" "Any position" C26 SG ? ? 
2 6W5 SER None Crosslinker "Amino-acid side chain" "Any position" P16 OG ? ? 
# 
