data_6N5
# 
_chem_comp.id                                    6N5 
_chem_comp.name                                  "~{N}-[(2~{S})-1-[[(2~{S})-3-(4-methoxyphenyl)-1-[[(2~{S},3~{S},4~{R})-4-methyl-3,5-bis(oxidanyl)-1-phenyl-pentan-2-yl]amino]-1-oxidanylidene-propan-2-yl]amino]-1-oxidanylidene-propan-2-yl]-1-methyl-5~{H}-indene-2-carboxamide" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C36 H43 N3 O6" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2016-05-30 
_chem_comp.pdbx_modified_date                    2024-09-27 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        613.743 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     6N5 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        5L52 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  EBI 
_chem_comp.pdbx_pcm                              Y 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
6N5 C4  C1  C 0 1 Y N N N N N 7.968  -133.674 14.139 4.370   -3.575 2.516  C4  6N5 1  
6N5 C5  C2  C 0 1 Y N N N N N 8.857  -134.600 13.585 4.857   -2.853 1.442  C5  6N5 2  
6N5 C6  C3  C 0 1 Y N N N N N 9.862  -134.179 12.700 5.754   -1.822 1.652  C6  6N5 3  
6N5 C7  C4  C 0 1 N N N N N N 10.821 -135.015 12.065 6.284   -1.036 0.481  C7  6N5 4  
6N5 C8  C5  C 0 1 N N S N N N 10.805 -136.471 12.532 5.367   0.159  0.212  C8  6N5 5  
6N5 C10 C6  C 0 1 N N R N N N 11.402 -138.906 11.439 7.306   1.579  -0.471 C10 6N5 6  
6N5 C24 C7  C 0 1 N N S N N N 11.767 -136.993 16.161 1.593   -0.041 -0.394 C24 6N5 7  
6N5 C26 C8  C 0 1 N N N N N N 10.883 -136.283 18.342 -0.693  0.622  0.129  C26 6N5 8  
6N5 C59 C9  C 0 1 N N N N N N 10.859 -138.830 24.392 -6.976  3.098  -0.181 C59 6N5 9  
6N5 C58 C10 C 0 1 N N N N N N 11.497 -137.458 24.111 -6.767  1.746  0.453  C58 6N5 10 
6N5 C57 C11 C 0 1 N N N N N N 12.215 -136.811 25.023 -7.759  0.904  0.855  C57 6N5 11 
6N5 C56 C12 C 0 1 N N N N N N 12.545 -137.135 26.280 -9.224  1.016  0.812  C56 6N5 12 
6N5 C55 C13 C 0 1 N N N N N N 13.318 -136.278 27.053 -9.997  0.040  1.276  C55 6N5 13 
6N5 C54 C14 C 0 1 N N N N N N 13.743 -135.083 26.489 -9.373  -1.204 1.857  C54 6N5 14 
6N5 C53 C15 C 0 1 N N N N N N 13.374 -134.798 25.177 -7.867  -1.320 1.901  C53 6N5 15 
6N5 C52 C16 C 0 1 N N N N N N 12.633 -135.663 24.471 -7.114  -0.304 1.418  C52 6N5 16 
6N5 C51 C17 C 0 1 N N N N N N 12.132 -135.552 23.199 -5.669  -0.100 1.313  C51 6N5 17 
6N5 C50 C18 C 0 1 N N N N N N 11.452 -136.760 22.968 -5.471  1.133  0.726  C50 6N5 18 
6N5 C60 C19 C 0 1 N N N N N N 10.772 -137.136 21.858 -4.161  1.738  0.430  C60 6N5 19 
6N5 O61 O1  O 0 1 N N N N N N 10.180 -138.215 21.827 -4.098  2.875  0.003  O61 6N5 20 
6N5 N28 N1  N 0 1 N N N N N N 10.774 -136.319 20.782 -3.031  1.032  0.634  N28 6N5 21 
6N5 C27 C20 C 0 1 N N S N N N 10.063 -136.720 19.546 -1.725  1.671  0.452  C27 6N5 22 
6N5 C38 C21 C 0 1 N N N N N N 8.663  -136.107 19.476 -1.329  2.397  1.739  C38 6N5 23 
6N5 O39 O2  O 0 1 N N N N N N 11.446 -135.188 18.331 -1.016  -0.545 0.058  O39 6N5 24 
6N5 N25 N2  N 0 1 N N N N N N 10.949 -137.199 17.360 0.589   0.979  -0.080 N25 6N5 25 
6N5 C40 C22 C 0 1 N N N N N N 12.834 -138.066 16.103 1.579   -0.324 -1.898 C40 6N5 26 
6N5 C41 C23 C 0 1 Y N N N N N 13.674 -137.789 17.195 0.256   -0.934 -2.282 C41 6N5 27 
6N5 C48 C24 C 0 1 Y N N N N N 13.342 -138.257 18.468 -0.795  -0.120 -2.660 C48 6N5 28 
6N5 C47 C25 C 0 1 Y N N N N N 14.155 -137.975 19.557 -2.009  -0.677 -3.013 C47 6N5 29 
6N5 C44 C26 C 0 1 Y N N N N N 15.313 -137.220 19.388 -2.173  -2.055 -2.988 C44 6N5 30 
6N5 O45 O3  O 0 1 N N N N N N 16.116 -136.947 20.459 -3.366  -2.605 -3.335 O45 6N5 31 
6N5 C46 C27 C 0 1 N N N N N N 15.487 -136.096 21.435 -3.462  -4.030 -3.286 C46 6N5 32 
6N5 C43 C28 C 0 1 Y N N N N N 15.652 -136.751 18.120 -1.116  -2.869 -2.609 C43 6N5 33 
6N5 C42 C29 C 0 1 Y N N N N N 14.835 -137.032 17.027 0.098   -2.308 -2.262 C42 6N5 34 
6N5 C23 C30 C 0 1 N N N N N N 10.892 -137.076 14.922 2.957   0.454  0.012  C23 6N5 35 
6N5 O49 O4  O 0 1 N N N N N N 9.786  -137.611 14.960 3.079   1.551  0.514  O49 6N5 36 
6N5 N22 N3  N 0 1 N N N N N N 11.456 -136.528 13.840 4.041   -0.322 -0.183 N22 6N5 37 
6N5 C3  C31 C 0 1 Y N N N N N 8.054  -132.319 13.826 4.776   -3.263 3.800  C3  6N5 38 
6N5 C2  C32 C 0 1 Y N N N N N 9.039  -131.888 12.945 5.672   -2.231 4.009  C2  6N5 39 
6N5 C1  C33 C 0 1 Y N N N N N 9.927  -132.813 12.394 6.164   -1.513 2.935  C1  6N5 40 
6N5 C9  C34 C 0 1 N N S N N N 11.620 -137.282 11.509 5.957   1.011  -0.914 C9  6N5 41 
6N5 O21 O5  O 0 1 N N N N N N 13.009 -136.984 11.680 5.064   2.085  -1.216 O21 6N5 42 
6N5 C11 C35 C 0 1 N N N N N N 10.063 -139.408 12.089 7.097   2.529  0.710  C11 6N5 43 
6N5 C12 C36 C 0 1 N N N N N N 12.552 -139.585 12.174 7.944   2.343  -1.633 C12 6N5 44 
6N5 O13 O6  O 0 1 N N N N N N 12.207 -139.521 13.561 9.260   2.760  -1.263 O13 6N5 45 
6N5 H1  H1  H 0 1 N N N N N N 7.202  -134.014 14.820 3.670   -4.381 2.352  H1  6N5 46 
6N5 H2  H2  H 0 1 N N N N N N 8.770  -135.646 13.840 4.536   -3.095 0.439  H2  6N5 47 
6N5 H3  H3  H 0 1 N N N N N N 11.821 -134.602 12.263 7.289   -0.679 0.709  H3  6N5 48 
6N5 H4  H4  H 0 1 N N N N N N 10.626 -135.000 10.982 6.317   -1.675 -0.401 H4  6N5 49 
6N5 H5  H5  H 0 1 N N N N N N 9.772  -136.847 12.581 5.281   0.762  1.116  H5  6N5 50 
6N5 H6  H6  H 0 1 N N N N N N 11.417 -139.206 10.381 7.962   0.763  -0.169 H6  6N5 51 
6N5 H7  H7  H 0 1 N N N N N N 12.248 -136.004 16.200 1.362   -0.957 0.150  H7  6N5 52 
6N5 H8  H8  H 0 1 N N N N N N 11.078 -139.132 25.427 -6.935  3.869  0.587  H8  6N5 53 
6N5 H9  H9  H 0 1 N N N N N N 9.770  -138.763 24.253 -6.193  3.277  -0.919 H9  6N5 54 
6N5 H10 H10 H 0 1 N N N N N N 11.273 -139.576 23.697 -7.949  3.123  -0.671 H10 6N5 55 
6N5 H11 H11 H 0 1 N N N N N N 12.207 -138.072 26.697 -9.678  1.904  0.398  H11 6N5 56 
6N5 H12 H12 H 0 1 N N N N N N 13.582 -136.535 28.068 -11.071 0.138  1.238  H12 6N5 57 
6N5 H13 H13 H 0 1 N N N N N N 14.842 -135.080 26.525 -9.739  -1.309 2.878  H13 6N5 58 
6N5 H14 H14 H 0 1 N N N N N N 13.354 -134.270 27.119 -9.750  -2.056 1.290  H14 6N5 59 
6N5 H15 H15 H 0 1 N N N N N N 13.688 -133.870 24.723 -7.398  -2.201 2.312  H15 6N5 60 
6N5 H16 H16 H 0 1 N N N N N N 12.237 -134.717 22.522 -4.900  -0.789 1.631  H16 6N5 61 
6N5 H17 H17 H 0 1 N N N N N N 11.256 -135.443 20.820 -3.082  0.101  0.901  H17 6N5 62 
6N5 H18 H18 H 0 1 N N N N N N 9.966  -137.815 19.525 -1.782  2.388  -0.367 H18 6N5 63 
6N5 H19 H19 H 0 1 N N N N N N 8.077  -136.428 20.350 -1.272  1.680  2.558  H19 6N5 64 
6N5 H20 H20 H 0 1 N N N N N N 8.743  -135.010 19.471 -0.357  2.872  1.604  H20 6N5 65 
6N5 H21 H21 H 0 1 N N N N N N 8.162  -136.442 18.556 -2.075  3.156  1.973  H21 6N5 66 
6N5 H22 H22 H 0 1 N N N N N N 10.425 -138.046 17.450 0.848   1.912  -0.023 H22 6N5 67 
6N5 H23 H23 H 0 1 N N N N N N 12.385 -139.066 16.202 1.722   0.608  -2.444 H23 6N5 68 
6N5 H24 H24 H 0 1 N N N N N N 13.393 -138.007 15.158 2.384   -1.016 -2.144 H24 6N5 69 
6N5 H25 H25 H 0 1 N N N N N N 12.445 -138.843 18.606 -0.668  0.952  -2.680 H25 6N5 70 
6N5 H26 H26 H 0 1 N N N N N N 13.889 -138.342 20.537 -2.831  -0.041 -3.308 H26 6N5 71 
6N5 H27 H27 H 0 1 N N N N N N 16.183 -135.915 22.268 -2.729  -4.467 -3.965 H27 6N5 72 
6N5 H28 H28 H 0 1 N N N N N N 15.219 -135.137 20.967 -3.266  -4.372 -2.270 H28 6N5 73 
6N5 H29 H29 H 0 1 N N N N N N 14.578 -136.585 21.816 -4.464  -4.337 -3.586 H29 6N5 74 
6N5 H30 H30 H 0 1 N N N N N N 16.551 -136.168 17.984 -1.241  -3.942 -2.588 H30 6N5 75 
6N5 H31 H31 H 0 1 N N N N N N 15.100 -136.663 16.047 0.922   -2.942 -1.971 H31 6N5 76 
6N5 H32 H32 H 0 1 N N N N N N 12.372 -136.136 13.930 3.943   -1.200 -0.584 H32 6N5 77 
6N5 H33 H33 H 0 1 N N N N N N 7.364  -131.612 14.263 4.393   -3.824 4.639  H33 6N5 78 
6N5 H34 H34 H 0 1 N N N N N N 9.117  -130.842 12.688 5.989   -1.987 5.012  H34 6N5 79 
6N5 H35 H35 H 0 1 N N N N N N 10.688 -132.465 11.711 6.864   -0.708 3.099  H35 6N5 80 
6N5 H36 H36 H 0 1 N N N N N N 11.323 -136.910 10.517 6.096   0.394  -1.802 H36 6N5 81 
6N5 H37 H37 H 0 1 N N N N N N 13.129 -136.042 11.720 4.186   1.798  -1.505 H37 6N5 82 
6N5 H38 H38 H 0 1 N N N N N N 9.999  -140.502 11.998 8.059   2.934  1.026  H38 6N5 83 
6N5 H39 H39 H 0 1 N N N N N N 10.044 -139.127 13.152 6.441   3.345  0.408  H39 6N5 84 
6N5 H40 H40 H 0 1 N N N N N N 9.209  -138.946 11.572 6.642   1.985  1.538  H40 6N5 85 
6N5 H41 H41 H 0 1 N N N N N N 12.651 -140.632 11.850 8.001   1.694  -2.507 H41 6N5 86 
6N5 H42 H42 H 0 1 N N N N N N 13.496 -139.052 11.987 7.339   3.218  -1.869 H42 6N5 87 
6N5 H43 H43 H 0 1 N N N N N N 12.891 -139.932 14.077 9.725   3.252  -1.954 H43 6N5 88 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
6N5 C10 C9  SING N N 1  
6N5 C10 C11 SING N N 2  
6N5 C10 C12 SING N N 3  
6N5 C9  O21 SING N N 4  
6N5 C9  C8  SING N N 5  
6N5 C7  C8  SING N N 6  
6N5 C7  C6  SING N N 7  
6N5 C12 O13 SING N N 8  
6N5 C1  C6  DOUB Y N 9  
6N5 C1  C2  SING Y N 10 
6N5 C8  N22 SING N N 11 
6N5 C6  C5  SING Y N 12 
6N5 C2  C3  DOUB Y N 13 
6N5 C5  C4  DOUB Y N 14 
6N5 C3  C4  SING Y N 15 
6N5 N22 C23 SING N N 16 
6N5 C23 O49 DOUB N N 17 
6N5 C23 C24 SING N N 18 
6N5 C40 C24 SING N N 19 
6N5 C40 C41 SING N N 20 
6N5 C24 N25 SING N N 21 
6N5 C42 C41 SING Y N 22 
6N5 C42 C43 DOUB Y N 23 
6N5 C41 C48 DOUB Y N 24 
6N5 N25 C26 SING N N 25 
6N5 C43 C44 SING Y N 26 
6N5 O39 C26 DOUB N N 27 
6N5 C26 C27 SING N N 28 
6N5 C48 C47 SING Y N 29 
6N5 C44 C47 DOUB Y N 30 
6N5 C44 O45 SING N N 31 
6N5 C38 C27 SING N N 32 
6N5 C27 N28 SING N N 33 
6N5 O45 C46 SING N N 34 
6N5 N28 C60 SING N N 35 
6N5 O61 C60 DOUB N N 36 
6N5 C60 C50 SING N N 37 
6N5 C50 C51 DOUB N N 38 
6N5 C50 C58 SING N N 39 
6N5 C51 C52 SING N N 40 
6N5 C58 C59 SING N N 41 
6N5 C58 C57 DOUB N N 42 
6N5 C52 C57 SING N N 43 
6N5 C52 C53 DOUB N N 44 
6N5 C57 C56 SING N N 45 
6N5 C53 C54 SING N N 46 
6N5 C56 C55 DOUB N N 47 
6N5 C54 C55 SING N N 48 
6N5 C4  H1  SING N N 49 
6N5 C5  H2  SING N N 50 
6N5 C7  H3  SING N N 51 
6N5 C7  H4  SING N N 52 
6N5 C8  H5  SING N N 53 
6N5 C10 H6  SING N N 54 
6N5 C24 H7  SING N N 55 
6N5 C59 H8  SING N N 56 
6N5 C59 H9  SING N N 57 
6N5 C59 H10 SING N N 58 
6N5 C56 H11 SING N N 59 
6N5 C55 H12 SING N N 60 
6N5 C54 H13 SING N N 61 
6N5 C54 H14 SING N N 62 
6N5 C53 H15 SING N N 63 
6N5 C51 H16 SING N N 64 
6N5 N28 H17 SING N N 65 
6N5 C27 H18 SING N N 66 
6N5 C38 H19 SING N N 67 
6N5 C38 H20 SING N N 68 
6N5 C38 H21 SING N N 69 
6N5 N25 H22 SING N N 70 
6N5 C40 H23 SING N N 71 
6N5 C40 H24 SING N N 72 
6N5 C48 H25 SING N N 73 
6N5 C47 H26 SING N N 74 
6N5 C46 H27 SING N N 75 
6N5 C46 H28 SING N N 76 
6N5 C46 H29 SING N N 77 
6N5 C43 H30 SING N N 78 
6N5 C42 H31 SING N N 79 
6N5 N22 H32 SING N N 80 
6N5 C3  H33 SING N N 81 
6N5 C2  H34 SING N N 82 
6N5 C1  H35 SING N N 83 
6N5 C9  H36 SING N N 84 
6N5 O21 H37 SING N N 85 
6N5 C11 H38 SING N N 86 
6N5 C11 H39 SING N N 87 
6N5 C11 H40 SING N N 88 
6N5 C12 H41 SING N N 89 
6N5 C12 H42 SING N N 90 
6N5 O13 H43 SING N N 91 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
6N5 InChI            InChI                1.03  "InChI=1S/C36H43N3O6/c1-22(21-40)33(41)31(18-25-10-6-5-7-11-25)38-36(44)32(19-26-14-16-28(45-4)17-15-26)39-34(42)24(3)37-35(43)30-20-27-12-8-9-13-29(27)23(30)2/h5-7,9-17,20,22,24,31-33,40-41H,8,18-19,21H2,1-4H3,(H,37,43)(H,38,44)(H,39,42)/t22-,24+,31+,32+,33+/m1/s1" 
6N5 InChIKey         InChI                1.03  RLIQDSPMEVUJOV-CFPFVMHBSA-N                                                                                                                                                                                                                                                
6N5 SMILES_CANONICAL CACTVS               3.385 "COc1ccc(C[C@H](NC(=O)[C@H](C)NC(=O)C2=CC3=CCC=CC3=C2C)C(=O)N[C@@H](Cc4ccccc4)[C@@H](O)[C@H](C)CO)cc1"                                                                                                                                                                     
6N5 SMILES           CACTVS               3.385 "COc1ccc(C[CH](NC(=O)[CH](C)NC(=O)C2=CC3=CCC=CC3=C2C)C(=O)N[CH](Cc4ccccc4)[CH](O)[CH](C)CO)cc1"                                                                                                                                                                            
6N5 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.5 "CC1=C2C=CCC=C2C=C1C(=O)N[C@@H](C)C(=O)N[C@@H](Cc3ccc(cc3)OC)C(=O)N[C@@H](Cc4ccccc4)[C@H]([C@H](C)CO)O"                                                                                                                                                                    
6N5 SMILES           "OpenEye OEToolkits" 2.0.5 "CC1=C2C=CCC=C2C=C1C(=O)NC(C)C(=O)NC(Cc3ccc(cc3)OC)C(=O)NC(Cc4ccccc4)C(C(C)CO)O"                                                                                                                                                                                           
# 
_pdbx_chem_comp_identifier.comp_id           6N5 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   2.0.5 
_pdbx_chem_comp_identifier.identifier        "~{N}-[(2~{S})-1-[[(2~{S})-3-(4-methoxyphenyl)-1-[[(2~{S},3~{S},4~{R})-4-methyl-3,5-bis(oxidanyl)-1-phenyl-pentan-2-yl]amino]-1-oxidanylidene-propan-2-yl]amino]-1-oxidanylidene-propan-2-yl]-1-methyl-5~{H}-indene-2-carboxamide" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
6N5 "Create component" 2016-05-30 EBI  
6N5 "Initial release"  2016-11-09 RCSB 
6N5 "Modify PCM"       2024-09-27 PDBE 
# 
loop_
_pdbx_chem_comp_pcm.pcm_id 
_pdbx_chem_comp_pcm.comp_id 
_pdbx_chem_comp_pcm.modified_residue_id 
_pdbx_chem_comp_pcm.type 
_pdbx_chem_comp_pcm.category 
_pdbx_chem_comp_pcm.position 
_pdbx_chem_comp_pcm.polypeptide_position 
_pdbx_chem_comp_pcm.comp_id_linking_atom 
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom 
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession 
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession 
1 6N5 THR None "Covalent chemical modification" "Amino-acid backbone"   N-terminal     C10 N   ? ? 
2 6N5 THR None "Covalent chemical modification" "Amino-acid side chain" "Any position" C9  OG1 ? ? 
# 
