data_6E5
# 
_chem_comp.id                                    6E5 
_chem_comp.name                                  "N-[3-({[(3S,5S)-5-{[(3-{[(Z)-imino(thiophen-2-yl)methyl]amino}benzyl)oxy]methyl}pyrrolidin-3-yl]oxy}methyl)phenyl]thiophene-2-carboximidamide" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C29 H31 N5 O2 S2" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2014-06-18 
_chem_comp.pdbx_modified_date                    2014-08-15 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        545.719 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     6E5 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        4UPO 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  EBI 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
6E5 S01    S01    S 0 1 Y N N 9.983  0.404  60.810 -9.912  -1.938 0.254  S01    6E5 1  
6E5 C02    C02    C 0 1 Y N N 10.196 1.409  62.199 -10.459 -3.214 -0.738 C02    6E5 2  
6E5 C03    C03    C 0 1 Y N N 11.617 1.655  62.308 -9.901  -3.149 -1.951 C03    6E5 3  
6E5 C04    C04    C 0 1 Y N N 12.416 1.126  61.307 -9.029  -2.099 -2.136 C04    6E5 4  
6E5 C05    C05    C 0 1 Y N N 11.675 0.393  60.404 -8.894  -1.308 -1.034 C05    6E5 5  
6E5 C06    C06    C 0 1 N N N 12.010 -0.358 59.166 -8.036  -0.118 -0.938 C06    6E5 6  
6E5 N07    N07    N 0 1 N N N 13.062 0.067  58.441 -7.985  0.604  0.239  N07    6E5 7  
6E5 N08    N08    N 0 1 N N N 11.305 -1.421 58.787 -7.321  0.257  -1.965 N08    6E5 8  
6E5 "N1'"  "N1'"  N 0 1 N N N 17.763 5.231  55.304 -0.890  -0.185 1.394  "N1'"  6E5 9  
6E5 C11    C11    C 0 1 Y N N 13.457 1.383  58.342 -7.084  1.664  0.370  C11    6E5 10 
6E5 C12    C12    C 0 1 Y N N 12.601 2.488  58.301 -7.470  2.829  1.022  C12    6E5 11 
6E5 C13    C13    C 0 1 Y N N 13.061 3.798  58.170 -6.577  3.875  1.150  C13    6E5 12 
6E5 C14    C14    C 0 1 Y N N 14.467 4.039  58.064 -5.301  3.764  0.629  C14    6E5 13 
6E5 C15    C15    C 0 1 Y N N 15.318 2.930  58.080 -4.914  2.607  -0.021 C15    6E5 14 
6E5 C16    C16    C 0 1 Y N N 14.830 1.636  58.236 -5.799  1.554  -0.146 C16    6E5 15 
6E5 C17    C17    C 0 1 N N N 16.849 3.096  58.002 -3.522  2.491  -0.586 C17    6E5 16 
6E5 O18    O18    O 0 1 N N N 17.119 4.415  57.578 -2.649  1.942  0.404  O18    6E5 17 
6E5 C19    C19    C 0 1 N N N 18.536 4.597  57.466 -1.297  1.790  -0.033 C19    6E5 18 
6E5 "C2'"  "C2'"  C 0 1 N N S 18.910 4.680  55.993 -0.458  1.198  1.102  "C2'"  6E5 19 
6E5 S21    S21    S 0 1 Y N N 20.877 15.858 57.279 10.738  0.301  -0.648 S21    6E5 20 
6E5 C22    C22    C 0 1 Y N N 21.798 17.130 56.526 11.366  1.791  -1.192 C22    6E5 21 
6E5 C23    C23    C 0 1 Y N N 23.043 16.598 56.184 10.383  2.624  -1.546 C23    6E5 22 
6E5 C24    C24    C 0 1 Y N N 23.237 15.249 56.518 9.110   2.119  -1.400 C24    6E5 23 
6E5 C25    C25    C 0 1 Y N N 22.126 14.669 57.140 9.087   0.845  -0.916 C25    6E5 24 
6E5 C26    C26    C 0 1 N N N 21.814 13.312 57.685 7.876   0.051  -0.659 C26    6E5 25 
6E5 N27    N27    N 0 1 N N N 21.179 12.415 56.939 7.984   -1.235 -0.166 N27    6E5 26 
6E5 N28    N28    N 0 1 N N N 22.173 12.989 58.923 6.697   0.563  -0.897 N28    6E5 27 
6E5 "C3'"  "C3'"  C 0 1 N N N 20.044 5.680  55.748 1.022   1.067  0.665  "C3'"  6E5 28 
6E5 C30    C30    C 0 1 Y N N 21.068 10.518 55.534 5.806   -1.289 0.876  C30    6E5 29 
6E5 C31    C31    C 0 1 Y N N 21.829 11.410 56.294 6.835   -1.939 0.207  C31    6E5 30 
6E5 C32    C32    C 0 1 Y N N 23.223 11.243 56.364 6.720   -3.291 -0.091 C32    6E5 31 
6E5 C33    C33    C 0 1 Y N N 23.846 10.192 55.682 5.584   -3.984 0.278  C33    6E5 32 
6E5 C34    C34    C 0 1 Y N N 23.073 9.304  54.926 4.562   -3.333 0.944  C34    6E5 33 
6E5 C35    C35    C 0 1 Y N N 21.684 9.470  54.849 4.673   -1.988 1.242  C35    6E5 34 
6E5 C37    C37    C 0 1 N N N 20.825 8.521  54.045 3.556   -1.283 1.968  C37    6E5 35 
6E5 O38    O38    O 0 1 N N N 19.844 7.991  54.936 2.631   -0.751 1.018  O38    6E5 36 
6E5 "C4'"  "C4'"  C 0 1 N N S 19.546 6.633  54.658 1.527   -0.060 1.605  "C4'"  6E5 37 
6E5 "C5'"  "C5'"  C 0 1 N N N 18.036 6.504  54.672 0.301   -0.989 1.724  "C5'"  6E5 38 
6E5 H02    H02    H 0 1 N N N 9.422  1.780  62.855 -11.163 -3.972 -0.428 H02    6E5 39 
6E5 H03    H03    H 0 1 N N N 12.034 2.222  63.127 -10.117 -3.868 -2.727 H03    6E5 40 
6E5 H04    H04    H 0 1 N N N 13.484 1.270  61.242 -8.504  -1.920 -3.063 H04    6E5 41 
6E5 HN07   HN07   H 0 0 N N N 13.592 -0.618 57.941 -8.574  0.374  0.975  HN07   6E5 42 
6E5 HN08   HN08   H 0 0 N N N 11.657 -1.822 57.941 -6.827  1.091  -1.934 HN08   6E5 43 
6E5 "HN1'" "HN1'" H 0 0 N N N 17.473 4.582  54.600 -1.559  -0.203 2.149  "HN1'" 6E5 44 
6E5 H12    H12    H 0 1 N N N 11.537 2.319  58.374 -8.467  2.916  1.428  H12    6E5 45 
6E5 H13    H13    H 0 1 N N N 12.363 4.622  58.149 -6.877  4.781  1.656  H13    6E5 46 
6E5 H14    H14    H 0 1 N N N 14.857 5.042  57.975 -4.605  4.584  0.731  H14    6E5 47 
6E5 H16    H16    H 0 1 N N N 15.525 0.810  58.276 -5.494  0.649  -0.650 H16    6E5 48 
6E5 H17    H17    H 0 1 N N N 17.295 2.923  58.992 -3.537  1.837  -1.459 H17    6E5 49 
6E5 H17A   H17A   H 0 0 N N N 17.267 2.378  57.281 -3.165  3.478  -0.878 H17A   6E5 50 
6E5 H19    H19    H 0 1 N N N 18.830 5.527  57.974 -1.267  1.122  -0.894 H19    6E5 51 
6E5 H19A   H19A   H 0 0 N N N 19.055 3.746  57.931 -0.894  2.763  -0.314 H19A   6E5 52 
6E5 "H2'"  "H2'"  H 0 1 N N N 19.181 3.687  55.605 -0.539  1.818  1.995  "H2'"  6E5 53 
6E5 H22    H22    H 0 1 N N N 21.467 18.144 56.355 12.419  2.029  -1.244 H22    6E5 54 
6E5 H23    H23    H 0 1 N N N 23.806 17.186 55.695 10.573  3.620  -1.918 H23    6E5 55 
6E5 H24    H24    H 0 1 N N N 24.152 14.712 56.315 8.218   2.677  -1.645 H24    6E5 56 
6E5 HN28   HN28   H 0 0 N N N 21.906 12.054 59.159 5.904   0.010  -0.820 HN28   6E5 57 
6E5 HN27   HN27   H 0 0 N N N 20.185 12.481 56.848 8.856   -1.649 -0.078 HN27   6E5 58 
6E5 "H3'"  "H3'"  H 0 1 N N N 20.266 6.238  56.670 1.096   0.766  -0.380 "H3'"  6E5 59 
6E5 "H3'A" "H3'A" H 0 0 N N N 20.949 5.154  55.410 1.565   1.995  0.842  "H3'A" 6E5 60 
6E5 H30    H30    H 0 1 N N N 19.997 10.640 55.476 5.894   -0.239 1.113  H30    6E5 61 
6E5 H32    H32    H 0 1 N N N 23.817 11.930 56.948 7.519   -3.800 -0.611 H32    6E5 62 
6E5 H33    H33    H 0 1 N N N 24.917 10.067 55.739 5.495   -5.035 0.046  H33    6E5 63 
6E5 H34    H34    H 0 1 N N N 23.548 8.489  54.401 3.674   -3.878 1.231  H34    6E5 64 
6E5 H37    H37    H 0 1 N N N 20.335 9.061  53.221 3.042   -1.991 2.619  H37    6E5 65 
6E5 H37A   H37A   H 0 0 N N N 21.442 7.708  53.635 3.967   -0.472 2.568  H37A   6E5 66 
6E5 "H4'"  "H4'"  H 0 1 N N N 19.943 6.324  53.680 1.802   0.346  2.579  "H4'"  6E5 67 
6E5 "H5'"  "H5'"  H 0 1 N N N 17.639 6.517  53.646 0.221   -1.369 2.742  "H5'"  6E5 68 
6E5 "H5'A" "H5'A" H 0 0 N N N 17.585 7.325  55.250 0.395   -1.818 1.023  "H5'A" 6E5 69 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
6E5 S01   C02    SING Y N 1  
6E5 S01   C05    SING Y N 2  
6E5 C02   C03    DOUB Y N 3  
6E5 C03   C04    SING Y N 4  
6E5 C04   C05    DOUB Y N 5  
6E5 C05   C06    SING N N 6  
6E5 C06   N07    SING N N 7  
6E5 C06   N08    DOUB N N 8  
6E5 N07   C11    SING N N 9  
6E5 "N1'" "C2'"  SING N N 10 
6E5 "N1'" "C5'"  SING N N 11 
6E5 C11   C12    DOUB Y N 12 
6E5 C11   C16    SING Y N 13 
6E5 C12   C13    SING Y N 14 
6E5 C13   C14    DOUB Y N 15 
6E5 C14   C15    SING Y N 16 
6E5 C15   C16    DOUB Y N 17 
6E5 C15   C17    SING N N 18 
6E5 C17   O18    SING N N 19 
6E5 O18   C19    SING N N 20 
6E5 C19   "C2'"  SING N N 21 
6E5 "C2'" "C3'"  SING N N 22 
6E5 S21   C22    SING Y N 23 
6E5 S21   C25    SING Y N 24 
6E5 C22   C23    DOUB Y N 25 
6E5 C23   C24    SING Y N 26 
6E5 C24   C25    DOUB Y N 27 
6E5 C25   C26    SING N N 28 
6E5 C26   N27    SING N N 29 
6E5 C26   N28    DOUB N N 30 
6E5 N27   C31    SING N N 31 
6E5 "C3'" "C4'"  SING N N 32 
6E5 C30   C31    DOUB Y N 33 
6E5 C30   C35    SING Y N 34 
6E5 C31   C32    SING Y N 35 
6E5 C32   C33    DOUB Y N 36 
6E5 C33   C34    SING Y N 37 
6E5 C34   C35    DOUB Y N 38 
6E5 C35   C37    SING N N 39 
6E5 C37   O38    SING N N 40 
6E5 O38   "C4'"  SING N N 41 
6E5 "C4'" "C5'"  SING N N 42 
6E5 C02   H02    SING N N 43 
6E5 C03   H03    SING N N 44 
6E5 C04   H04    SING N N 45 
6E5 N07   HN07   SING N N 46 
6E5 N08   HN08   SING N N 47 
6E5 "N1'" "HN1'" SING N N 48 
6E5 C12   H12    SING N N 49 
6E5 C13   H13    SING N N 50 
6E5 C14   H14    SING N N 51 
6E5 C16   H16    SING N N 52 
6E5 C17   H17    SING N N 53 
6E5 C17   H17A   SING N N 54 
6E5 C19   H19    SING N N 55 
6E5 C19   H19A   SING N N 56 
6E5 "C2'" "H2'"  SING N N 57 
6E5 C22   H22    SING N N 58 
6E5 C23   H23    SING N N 59 
6E5 C24   H24    SING N N 60 
6E5 N28   HN28   SING N N 61 
6E5 N27   HN27   SING N N 62 
6E5 "C3'" "H3'"  SING N N 63 
6E5 "C3'" "H3'A" SING N N 64 
6E5 C30   H30    SING N N 65 
6E5 C32   H32    SING N N 66 
6E5 C33   H33    SING N N 67 
6E5 C34   H34    SING N N 68 
6E5 C37   H37    SING N N 69 
6E5 C37   H37A   SING N N 70 
6E5 "C4'" "H4'"  SING N N 71 
6E5 "C5'" "H5'"  SING N N 72 
6E5 "C5'" "H5'A" SING N N 73 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
6E5 SMILES           ACDLabs              12.01 "s1cccc1C(=[N@H])Nc2cccc(c2)COCC5NCC(OCc3cc(ccc3)NC(=[N@H])c4sccc4)C5"                                                                                                                                       
6E5 InChI            InChI                1.03  "InChI=1S/C29H31N5O2S2/c30-28(26-9-3-11-37-26)33-22-7-1-5-20(13-22)17-35-19-24-15-25(16-32-24)36-18-21-6-2-8-23(14-21)34-29(31)27-10-4-12-38-27/h1-14,24-25,32H,15-19H2,(H2,30,33)(H2,31,34)/t24-,25-/m0/s1" 
6E5 InChIKey         InChI                1.03  GPVRORSBZUBDJB-DQEYMECFSA-N                                                                                                                                                                                  
6E5 SMILES_CANONICAL CACTVS               3.385 "N=C(Nc1cccc(COC[C@@H]2C[C@@H](CN2)OCc3cccc(NC(=N)c4sccc4)c3)c1)c5sccc5"                                                                                                                                     
6E5 SMILES           CACTVS               3.385 "N=C(Nc1cccc(COC[CH]2C[CH](CN2)OCc3cccc(NC(=N)c4sccc4)c3)c1)c5sccc5"                                                                                                                                         
6E5 SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "[H]/N=C(/c1cccs1)\Nc2cccc(c2)COC[C@@H]3C[C@@H](CN3)OCc4cccc(c4)N/C(=N\[H])/c5cccs5"                                                                                                                         
6E5 SMILES           "OpenEye OEToolkits" 1.7.6 "c1cc(cc(c1)NC(=N)c2cccs2)COCC3CC(CN3)OCc4cccc(c4)NC(=N)c5cccs5"                                                                                                                                             
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
6E5 "SYSTEMATIC NAME" ACDLabs              12.01 "N-[3-({[(3S,5S)-5-{[(3-{[(Z)-imino(thiophen-2-yl)methyl]amino}benzyl)oxy]methyl}pyrrolidin-3-yl]oxy}methyl)phenyl]thiophene-2-carboximidamide" 
6E5 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 "N-[3-[[(2S,4S)-4-[[3-[(C-thiophen-2-ylcarbonimidoyl)amino]phenyl]methoxy]pyrrolidin-2-yl]methoxymethyl]phenyl]thiophene-2-carboximidamide"     
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
6E5 "Create component" 2014-06-18 EBI  
6E5 "Initial release"  2014-08-20 RCSB 
# 
